Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G5008 Salvia bowleyana HOM05D006545 ORTHO05D007985 2.7e-26 121.3 66 100.0
PGR102G1056 Punica granatum HOM05D006545 ORTHO05D007985 1.1e-19 99.4 62 83.9
MSTRG.10562 Avicennia marina HOM05D006545 ORTHO05D007985 1.9e-19 98.6 62 80.6
Dinv42321 Davidia involucrata HOM05D006545 ORTHO05D007985 3.3e-19 97.8 62 80.6
Potri.004G215200 Populus trichocarpa HOM05D006545 ORTHO05D007985 4.2e-19 97.4 62 82.3
DCAR_028856 Daucus carota HOM05D006545 ORTHO05D007985 5.5e-19 97.1 62 80.6
DCAR_032235 Daucus carota HOM05D006545 ORTHO05D007985 5.5e-19 97.1 62 80.6
HanXRQChr12g0363181 Helianthus annuus HOM05D006545 ORTHO05D007985 5.5e-19 97.1 62 82.3
QL02p062521 Quercus lobata HOM05D006545 ORTHO05D007985 5.5e-19 97.1 61 82.0
Cfa003081 Carpinus fangiana HOM05D000085 ORTHO05D001460 7.2e-19 96.7 62 79.0
Dinv36770 Davidia involucrata HOM05D006545 ORTHO05D007985 9.5e-19 96.3 62 80.6
TWI34G0024 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 9.5e-19 96.3 62 82.3
GSVIVG01015199001 Vitis vinifera HOM05D006545 ORTHO05D007985 1.2e-18 95.9 62 80.6
Actinidia29903 Actinidia chinensis HOM05D000085 ORTHO05D001460 1.6e-18 95.5 62 80.6
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 1.6e-18 95.5 62 83.9
ClCG03G015590 Citrullus lanatus HOM05D006545 ORTHO05D007985 1.6e-18 95.5 62 80.6
Eucgr.C00895 Eucalyptus grandis HOM05D006545 ORTHO05D007985 1.6e-18 95.5 62 79.0
Medtr4g126270 Medicago truncatula HOM05D000085 ORTHO05D001460 1.6e-18 95.5 62 83.9
Cc06_g11430 Coffea canephora HOM05D006545 ORTHO05D007985 2.1e-18 95.1 62 79.0
Nitab4.5_0004526g0070 Nicotiana tabacum HOM05D006545 ORTHO05D007985 2.1e-18 95.1 62 79.0
MELO3C015473.2 Cucumis melo HOM05D006545 ORTHO05D007985 2.8e-18 94.7 62 79.0
CsaV3_1G040450 Cucumis sativus L. HOM05D006545 ORTHO05D007985 2.8e-18 94.7 62 79.0
Lj4g0002489 Lotus japonicus HOM05D006545 ORTHO05D007985 2.8e-18 94.7 62 80.6
vmacro06292 Vaccinium macrocarpon HOM05D006545 ORTHO05D007985 2.8e-18 94.7 62 79.0
Atru.chr7.1592 Acer truncatum HOM05D006545 ORTHO05D007985 3.6e-18 94.4 62 80.6
EL10Ac8g19212 Beta vulgaris HOM05D006545 ORTHO05D007985 3.6e-18 94.4 62 79.0
Nitab4.5_0008523g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 3.6e-18 94.4 62 80.6
TWI63G0169 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 3.6e-18 94.4 62 80.6
CANSAT56G1499 Cannabis sativa HOM05D006545 ORTHO05D007985 4.7e-18 94.0 62 79.0
CANSAT56G4473 Cannabis sativa HOM05D006545 ORTHO05D007985 4.7e-18 94.0 62 79.0
Duzib168G1224 Durio zibethinus HOM05D006545 ORTHO05D007985 4.7e-18 94.0 62 75.8
Migut.L01494 Erythranthe guttata HOM05D006545 ORTHO05D007985 4.7e-18 94.0 62 77.4
Lsat_1_v5_gn_7_37040 Lactuca sativa HOM05D006545 ORTHO05D007985 4.7e-18 94.0 62 79.0
Sc18g0002090 Simmondsia chinensis HOM05D000085 ORTHO05D001460 4.7e-18 94.0 62 79.0
Actinidia19138 Actinidia chinensis HOM05D006545 ORTHO05D007985 6.1e-18 93.6 62 79.0
Ciclev10010087m.g Citrus clementina HOM05D006545 ORTHO05D007985 6.1e-18 93.6 62 79.0
ECA240G1755 Erigeron canadensis HOM05D006545 ORTHO05D007985 6.1e-18 93.6 62 77.4
Glyma.13G104200 Glycine max HOM05D006545 ORTHO05D007985 6.1e-18 93.6 62 79.0
Glyma.17G054900 Glycine max HOM05D006545 ORTHO05D007985 6.1e-18 93.6 62 79.0
Gohir.A05G030100 Gossypium hirsutum HOM05D006545 ORTHO05D007985 6.1e-18 93.6 62 75.8
Gohir.D05G031500 Gossypium hirsutum HOM05D006545 ORTHO05D007985 6.1e-18 93.6 62 75.8
Gorai.009G031700 Gossypium raimondii HOM05D006545 ORTHO05D007985 6.1e-18 93.6 62 75.8
Manes.03G034000 Manihot esculenta HOM05D006545 ORTHO05D007985 6.1e-18 93.6 62 77.4
Thecc.09G088900 Theobroma cacao HOM05D006545 ORTHO05D007985 6.1e-18 93.6 62 75.8
TAR383G1000 Trochodendron aralioides HOM05D006545 ORTHO05D007985 6.1e-18 93.6 62 75.8
Manes.16G101800 Manihot esculenta HOM05D006545 ORTHO05D007985 8.0e-18 93.2 62 79.0
arahy.Tifrunner.gnm1.ann1.CH1R66 Arachis hypogaea HOM05D006545 ORTHO05D007985 1.0e-17 92.8 62 79.0
arahy.Tifrunner.gnm1.ann1.S1CX09 Arachis hypogaea HOM05D006545 ORTHO05D007985 1.0e-17 92.8 62 79.0
CiPaw.04G149100 Carya illinoinensis HOM05D006545 ORTHO05D007985 1.0e-17 92.8 62 77.4
Psat4g015120 Pisum sativum HOM05D006545 ORTHO05D007985 1.0e-17 92.8 62 80.6
Ah.09g228260 Amaranthus hybridus HOM05D006545 ORTHO05D007985 1.4e-17 92.4 62 80.6
arahy.Tifrunner.gnm1.ann1.MQ59WG Arachis hypogaea HOM05D000085 ORTHO05D001460 1.4e-17 92.4 62 77.4
BcaNung00485 Brassica carinata HOM05D006545 ORTHO05D007985 1.4e-17 92.4 62 80.6
CiPaw.03G215100 Carya illinoinensis HOM05D006545 ORTHO05D007985 1.4e-17 92.4 62 77.4
Sabra06G0115900 Salix brachista HOM05D006545 ORTHO05D007985 1.4e-17 92.4 62 77.4
Duzib150G0099 Durio zibethinus HOM05D006545 ORTHO05D007985 1.8e-17 92.0 62 74.2
Nitab4.5_0000540g0270 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.8e-17 92.0 62 79.0
Phvul.003G136800 Phaseolus vulgaris HOM05D006545 ORTHO05D007985 1.8e-17 92.0 62 75.8
AUR62029070 Chenopodium quinoa HOM05D006545 ORTHO05D007985 2.3e-17 91.7 62 77.4
AUR62033964 Chenopodium quinoa HOM05D006545 ORTHO05D007985 2.3e-17 91.7 62 77.4
FvH4_1g07510 Fragaria vesca HOM05D006545 ORTHO05D007985 2.3e-17 91.7 62 75.8
FAN19G0384 Fragaria x ananassa HOM05D006545 ORTHO05D007985 2.3e-17 91.7 62 75.8
FAN23G2021 Fragaria x ananassa HOM05D006545 ORTHO05D007985 2.3e-17 91.7 62 75.8
FAN26G0590 Fragaria x ananassa HOM05D006545 ORTHO05D007985 2.3e-17 91.7 62 75.8
Gohir.A13G193400 Gossypium hirsutum HOM05D006545 ORTHO05D007985 2.3e-17 91.7 62 74.2
THA.LOC104814622 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 2.3e-17 91.7 62 80.6
THA.LOC104820022 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 2.3e-17 91.7 62 79.0
AL7G22570 Arabidopsis lyrata HOM05D006545 ORTHO05D007985 3.0e-17 91.3 62 79.0
Carub.0007s1077 Capsella rubella HOM05D006545 ORTHO05D007985 3.0e-17 91.3 62 79.0
CARHR237610 Cardamine hirsuta HOM05D006545 ORTHO05D007985 3.0e-17 91.3 62 79.0
Thhalv10026717m.g Eutrema salsugineum HOM05D006545 ORTHO05D007985 3.0e-17 91.3 62 79.0
Nn8g38862 Nelumbo nucifera HOM05D006545 ORTHO05D007985 3.0e-17 91.3 62 75.8
Sp7g27510 Schrenkiella parvula HOM05D006545 ORTHO05D007985 3.0e-17 91.3 62 79.0
PSO210G2413 Papaver somniferum HOM05D006545 ORTHO05D007985 4.0e-17 90.9 62 79.0
Potri.006G146800 Populus trichocarpa HOM05D006545 ORTHO05D007985 4.0e-17 90.9 62 75.8
RcHm_v2.0_Chr2g0093401 Rosa chinensis HOM05D006545 ORTHO05D007985 4.0e-17 90.9 62 75.8
A03p59030 Brassica napus HOM05D006545 ORTHO05D007985 5.2e-17 90.5 62 77.4
MBI04_g31162_MAGBIO Magnolia biondii HOM05D006545 ORTHO05D007985 5.2e-17 90.5 62 74.2
Prupe.7G209400 Prunus persica HOM05D006545 ORTHO05D007985 5.2e-17 90.5 62 77.4
Sed0026852 Sechium edule HOM05D006545 ORTHO05D007985 5.2e-17 90.5 62 74.2
PGSC0003DMG400000279 Solanum tuberosum HOM05D006545 ORTHO05D007985 5.2e-17 90.5 62 75.8
unitig_85.g27258 Utricularia gibba HOM05D006545 ORTHO05D007985 5.2e-17 90.5 62 74.2
Aa31LG2G20830 Aethionema arabicum HOM05D006545 ORTHO05D007985 6.8e-17 90.1 62 77.4
AT4G29735 Arabidopsis thaliana HOM05D006545 ORTHO05D007985 6.8e-17 90.1 62 77.4
Gohir.D13G199200 Gossypium hirsutum HOM05D006545 ORTHO05D007985 6.8e-17 90.1 62 74.2
C07p57080 Brassica napus HOM05D006545 ORTHO05D007985 8.9e-17 89.7 62 77.4
CDE06G0764 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 8.9e-17 89.7 62 75.8
CDE07G1614 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 8.9e-17 89.7 62 75.8
PSO210G4511 Papaver somniferum HOM05D006545 ORTHO05D007985 1.2e-16 89.4 62 75.8
Solyc12g008860.3 Solanum lycopersicum HOM05D006545 ORTHO05D007985 1.2e-16 89.4 62 74.2
Sopen12g003790 Solanum pennellii HOM05D006545 ORTHO05D007985 1.2e-16 89.4 62 74.2
TPR.G9474 Trifolium pratense HOM05D000085 ORTHO05D001460 1.5e-16 89.0 59 79.7
A01p08390 Brassica napus HOM05D000125 ORTHO05D000120 3.4e-16 87.8 62 77.4
BraA01t00787Z Brassica rapa HOM05D000125 ORTHO05D000120 3.4e-16 87.8 62 77.4
Gorai.013G227700 Gossypium raimondii HOM05D006545 ORTHO05D007985 3.4e-16 87.8 62 72.6
Os06g0567000 Oryza sativa ssp. japonica HOM05D006545 ORTHO05D007985 4.4e-16 87.4 62 72.6
ATR0749G052 Amborella trichopoda HOM05D006545 ORTHO05D007985 5.7e-16 87.0 62 71.0
Aqoxy7G01208 Aquilegia oxysepala HOM05D006545 ORTHO05D007985 5.7e-16 87.0 62 71.0
Nitab4.5_0006552g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 9.8e-16 86.3 61 73.8
C03p89150 Brassica napus HOM05D006545 ORTHO05D007985 1.3e-15 85.9 62 74.2
unitig_699.g19296 Utricularia gibba HOM05D006545 ORTHO05D007985 1.7e-15 85.5 62 69.4
BcaC09g51752 Brassica carinata HOM05D006545 ORTHO05D007985 2.8e-15 84.7 62 75.8
BcaC09g52224 Brassica carinata HOM05D006545 ORTHO05D007985 2.8e-15 84.7 62 75.8
BcaC01g01182 Brassica carinata HOM05D006545 ORTHO05D007985 3.7e-15 84.3 62 72.6
HanXRQChr12g0377121 Helianthus annuus HOM05D006545 ORTHO05D007985 6.3e-15 83.6 56 80.4
Lalb_Chr13g0299701 Lupinus albus HOM05D006545 ORTHO05D007985 6.3e-15 83.6 62 72.6
Zm00001eb277360 Zea mays HOM05D006545 ORTHO05D007985 6.3e-15 83.6 61 67.2
MD02G1079700 Malus domestica HOM05D006545 ORTHO05D007985 1.1e-14 82.8 62 69.4
PSO063G6244 Papaver somniferum HOM05D006545 ORTHO05D007985 1.1e-14 82.8 62 66.1
PSO832G3375 Papaver somniferum HOM05D006545 ORTHO05D007985 1.1e-14 82.8 62 64.5
Zm00001eb383910 Zea mays HOM05D006545 ORTHO05D007985 1.1e-14 82.8 62 66.1
Lalb_Chr07g0180851 Lupinus albus HOM05D006545 ORTHO05D007985 3.1e-14 81.3 62 71.0
MD15G1207400 Malus domestica HOM05D006545 ORTHO05D007985 3.1e-14 81.3 62 64.5
BraA03t14963Z Brassica rapa HOM05D006545 ORTHO05D007985 1.6e-13 79.0 84 58.3
C01p09580 Brassica napus HOM05D000125 ORTHO05D007985 2.0e-13 78.6 66 68.2
Mapoly0003s0235 Marchantia polymorpha HOM05D006545 ORTHO05D007985 2.7e-13 78.2 62 62.9
Pp3c11_23220 Physcomitrium patens HOM05D006545 ORTHO05D007985 3.5e-13 77.8 62 62.9
BolC7t46179H Brassica oleracea HOM05D006545 ORTHO05D007985 1.7e-12 75.5 88 54.5
TAR624G0377 Trochodendron aralioides HOM05D002302 ORTHO05D002728 2.3e-12 75.1 51 72.5
Nitab4.5_0004223g0010 Nicotiana tabacum HOM05D006545 ORTHO05D007985 2.9e-12 74.7 46 78.3
Rhsim03G0232100 Rhododendron simsii HOM05D000004 ORTHO05D007985 3.9e-12 74.3 47 85.1
COL.COLO4_18197 Corchorus olitorius HOM05D002302 ORTHO05D002728 5.0e-12 73.9 51 70.6
C01p09720 Brassica napus HOM05D006545 ORTHO05D007985 1.9e-11 72.0 84 56.0
HPP92_008778 Vanilla planifolia HOM05D006545 ORTHO05D007985 1.9e-11 72.0 46 71.7
FAN26G2289 Fragaria x ananassa HOM05D006545 ORTHO05D007985 4.3e-11 70.9 48 68.8
SMO361G0088 Selaginella moellendorffii HOM05D006545 ORTHO05D007985 2.1e-10 68.6 62 56.5
Lj7C676T8 Lonicera japonica HOM05D006545 ORTHO05D007985 1.0e-09 66.2 37 91.9
BcaB03g12615 Brassica carinata HOM05D006545 ORTHO05D007985 1.4e-09 65.9 46 73.9
Nitab4.5_0000095g0160 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.8e-09 65.5 59 61.0
A08p19550 Brassica napus HOM05D006545 ORTHO05D007985 1.2e-08 62.8 46 71.7
Actinidia25251 Actinidia chinensis HOM05D006545 ORTHO05D007985 1.1e-06 56.2 38 76.3


User provided reference genes

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