Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G0168 Salvia bowleyana HOM05D001501 ORTHO05D001329 8.7e-44 179.9 88 100.0
SalBow5G1382 Salvia bowleyana HOM05D001501 ORTHO05D001329 8.7e-44 179.9 88 100.0
SalBow5G4913 Salvia bowleyana HOM05D001501 ORTHO05D001329 8.7e-44 179.9 88 100.0
Eucgr.A01165 Eucalyptus grandis HOM05D001501 ORTHO05D001329 4.3e-19 97.8 100 52.0
Cpa.g.sc705.1 Carica papaya HOM05D001501 ORTHO05D001329 3.7e-18 94.7 101 48.5
MSTRG.5730 Avicennia marina HOM05D001501 ORTHO05D001329 1.8e-17 92.4 111 44.1
Lalb_Chr25g0289181 Lupinus albus HOM05D001501 ORTHO05D001329 3.1e-17 91.7 105 45.7
Glyma.03G179100 Glycine max HOM05D001501 ORTHO05D001329 4.1e-17 91.3 101 46.5
Sopen10g033670 Solanum pennellii HOM05D001501 ORTHO05D001329 4.1e-17 91.3 103 45.6
Gohir.A04G075300 Gossypium hirsutum HOM05D001501 ORTHO05D001329 6.9e-17 90.5 113 45.1
Gorai.009G419000 Gossypium raimondii HOM05D001501 ORTHO05D001329 6.9e-17 90.5 113 45.1
Gohir.D04G114400 Gossypium hirsutum HOM05D001501 ORTHO05D001329 9.0e-17 90.1 113 44.2
Glyma.19G179800 Glycine max HOM05D001501 ORTHO05D001329 1.2e-16 89.7 101 48.5
Solyc10g084230.2 Solanum lycopersicum HOM05D001501 ORTHO05D001329 2.0e-16 89.0 103 45.6
VMungo1383G2761 Vigna mungo HOM05D001501 ORTHO05D001329 2.6e-16 88.6 101 45.5
ATR0759G121 Amborella trichopoda HOM05D001501 ORTHO05D001329 7.7e-16 87.0 100 45.0
arahy.Tifrunner.gnm1.ann1.X384WT Arachis hypogaea HOM05D001501 ORTHO05D001329 7.7e-16 87.0 116 41.4
arahy.Tifrunner.gnm1.ann1.F8ZCRL Arachis hypogaea HOM05D001501 ORTHO05D001329 1.0e-15 86.7 116 40.5
Prupe.6G239300 Prunus persica HOM05D001501 ORTHO05D001329 1.7e-15 85.9 114 45.6
Thecc.05G056600 Theobroma cacao HOM05D001501 ORTHO05D001329 1.7e-15 85.9 109 45.0
TAR633G1143 Trochodendron aralioides HOM05D001501 ORTHO05D001329 1.7e-15 85.9 113 40.7
Phvul.001G175800 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 2.2e-15 85.5 103 43.7
Dinv37270 Davidia involucrata HOM05D001501 ORTHO05D001329 2.9e-15 85.1 111 42.3
Manes.08G004900 Manihot esculenta HOM05D001501 ORTHO05D001329 2.9e-15 85.1 115 40.0
MBI14_g25894_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 3.8e-15 84.7 89 49.4
PGSC0003DMG400010464 Solanum tuberosum HOM05D001501 ORTHO05D001329 3.8e-15 84.7 113 41.6
TPR.G27593 Trifolium pratense HOM05D001501 ORTHO05D001329 3.8e-15 84.7 114 39.5
TAR636G0711 Trochodendron aralioides HOM05D001501 ORTHO05D001329 3.8e-15 84.7 106 45.3
Duzib128G1910 Durio zibethinus HOM05D001501 ORTHO05D001329 5.0e-15 84.3 106 41.5
Peaxi162Scf00472g00220 Petunia axillaris HOM05D001501 ORTHO05D001329 5.0e-15 84.3 112 41.1
Potri.006G129800 Populus trichocarpa HOM05D001501 ORTHO05D001329 5.0e-15 84.3 115 42.6
Actinidia19693 Actinidia chinensis HOM05D001501 ORTHO05D001329 6.5e-15 84.0 101 48.5
MSTRG.26715 Avicennia marina HOM05D001501 ORTHO05D001329 8.5e-15 83.6 93 49.5
Cfa017527 Carpinus fangiana HOM05D001501 ORTHO05D001329 8.5e-15 83.6 115 39.1
Sabra06G0102000 Salix brachista HOM05D001501 ORTHO05D001329 8.5e-15 83.6 113 41.6
FvH4_6g15581 Fragaria vesca HOM05D001501 ORTHO05D001329 1.4e-14 82.8 115 41.7
FAN14G1218 Fragaria x ananassa HOM05D000190 ORTHO05D000113 1.4e-14 82.8 115 41.7
Gohir.A09G151100 Gossypium hirsutum HOM05D001501 ORTHO05D001329 1.4e-14 82.8 115 39.1
Gohir.A09G151150 Gossypium hirsutum HOM05D001501 ORTHO05D001329 1.4e-14 82.8 115 39.1
Gorai.006G167900 Gossypium raimondii HOM05D001501 ORTHO05D001329 1.4e-14 82.8 114 39.5
Haze_20622 Corylus avellana HOM05D001501 ORTHO05D001329 1.9e-14 82.4 116 39.7
Lj1g0015323 Lotus japonicus HOM05D001501 ORTHO05D001329 1.9e-14 82.4 115 40.0
Psat3g044560 Pisum sativum HOM05D001501 ORTHO05D001329 1.9e-14 82.4 120 36.7
FAN05G1796 Fragaria x ananassa HOM05D000190 ORTHO05D001329 2.5e-14 82.0 115 40.0
QL07p044984 Quercus lobata HOM05D001501 ORTHO05D001329 3.2e-14 81.6 108 38.9
CSS0015375 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 4.2e-14 81.3 109 41.3
Cc06_g03740 Coffea canephora HOM05D001501 ORTHO05D001329 4.2e-14 81.3 116 44.0
Duzib093G2253 Durio zibethinus HOM05D001501 ORTHO05D001329 5.5e-14 80.9 108 39.8
Gohir.D09G146700 Gossypium hirsutum HOM05D001501 ORTHO05D001329 5.5e-14 80.9 114 39.5
CANSAT80G0732 Cannabis sativa HOM05D001501 ORTHO05D001329 7.2e-14 80.5 126 37.3
FAN02G3557 Fragaria x ananassa HOM05D001501 ORTHO05D001329 7.2e-14 80.5 120 40.0
RcHm_v2.0_Chr3g0469151 Rosa chinensis HOM05D001501 ORTHO05D001329 7.2e-14 80.5 119 40.3
Aqoxy1G02757 Aquilegia oxysepala HOM05D001501 ORTHO05D001329 9.4e-14 80.1 103 44.7
FAN09G4357 Fragaria x ananassa HOM05D001501 ORTHO05D001329 9.4e-14 80.1 119 38.7
Nn2g10728 Nelumbo nucifera HOM05D001501 ORTHO05D001329 9.4e-14 80.1 121 38.0
CDE07G2074 Ceratophyllum demersum HOM05D001501 ORTHO05D001329 1.2e-13 79.7 102 45.1
Lalb_Chr20g0112821 Lupinus albus HOM05D001501 ORTHO05D001329 1.2e-13 79.7 94 44.7
ClCG10G020410 Citrullus lanatus HOM05D001501 ORTHO05D001329 1.6e-13 79.3 113 40.7
GSVIVG01025651001 Vitis vinifera HOM05D001501 ORTHO05D001329 2.1e-13 79.0 115 40.9
CSS0013234 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 2.7e-13 78.6 109 40.4
DCAR_014976 Daucus carota HOM05D001501 ORTHO05D001329 7.9e-13 77.0 110 40.0
PGR004G0314 Punica granatum HOM05D001501 ORTHO05D001329 7.9e-13 77.0 113 37.2
MELO3C009330.2 Cucumis melo HOM05D001501 ORTHO05D001329 1.4e-12 76.3 112 38.4
CsaV3_3G035700 Cucumis sativus L. HOM05D001501 ORTHO05D001329 1.4e-12 76.3 111 38.7
Nn2g13038 Nelumbo nucifera HOM05D001501 ORTHO05D001329 1.4e-12 76.3 122 40.2
TWI74G0251 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 1.4e-12 76.3 110 36.4
Sed0013904 Sechium edule HOM05D001501 ORTHO05D001329 2.3e-12 75.5 99 43.4
COL.COLO4_27056 Corchorus olitorius HOM05D001501 ORTHO05D001329 8.8e-12 73.6 135 34.1
CDE09G0474 Ceratophyllum demersum HOM05D001501 ORTHO05D001329 1.1e-11 73.2 93 40.9
TWI53G2136 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 2.0e-11 72.4 116 37.1
DCAR_017714 Daucus carota HOM05D001501 ORTHO05D001329 4.3e-11 71.2 122 36.9
SalBow8G1038 Salvia bowleyana HOM05D001501 ORTHO05D001329 7.4e-11 70.5 88 44.3
Sc20g0005140 Simmondsia chinensis HOM05D001501 ORTHO05D001329 7.4e-11 70.5 94 41.5
EL10Ac7g16526 Beta vulgaris HOM05D001501 ORTHO05D001329 9.7e-11 70.1 102 43.1
PSO384G3594 Papaver somniferum HOM05D001501 ORTHO05D001329 1.7e-10 69.3 108 38.0
Rhsim05G0184000 Rhododendron simsii HOM05D001501 ORTHO05D001329 4.8e-10 67.8 113 35.4
ATR0012G043 Amborella trichopoda HOM05D001501 ORTHO05D001329 8.2e-10 67.0 93 39.8
PSO339G3537 Papaver somniferum HOM05D001501 ORTHO05D001329 8.2e-10 67.0 111 36.0
Dinv12368 Davidia involucrata HOM05D001501 ORTHO05D001329 1.1e-09 66.6 101 36.6
MBI07_g01326_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 1.4e-09 66.2 87 40.2
MBI07_g38899_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 1.4e-09 66.2 87 40.2
vmacro20046 Vaccinium macrocarpon HOM05D001501 ORTHO05D001329 1.4e-09 66.2 114 33.3
CiPaw.10G134900 Carya illinoinensis HOM05D001501 ORTHO05D001329 1.8e-09 65.9 109 38.5
arahy.Tifrunner.gnm1.ann1.14Q3ET Arachis hypogaea HOM05D001501 ORTHO05D001329 2.4e-09 65.5 88 42.0
SGA_v2.0_scaffold452G51849 Striga asiatica HOM05D001501 ORTHO05D001329 6.9e-09 63.9 98 38.8
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 9.1e-09 63.5 88 40.9
Actinidia39519 Actinidia chinensis HOM05D001501 ORTHO05D001329 1.2e-08 63.2 97 38.1
GSVIVG01020749001 Vitis vinifera HOM05D001501 ORTHO05D001329 1.5e-08 62.8 93 39.8
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 2.6e-08 62.0 88 39.8
TAR627G0009 Trochodendron aralioides HOM05D001501 ORTHO05D001329 2.6e-08 62.0 97 40.2
MD05G1296400 Malus domestica HOM05D001501 ORTHO05D001329 3.4e-08 61.6 93 39.8
TAR627G0776 Trochodendron aralioides HOM05D001501 ORTHO05D001329 3.4e-08 61.6 94 40.4
Atru.chr6.2761 Acer truncatum HOM05D001501 ORTHO05D001329 4.5e-08 61.2 93 37.6
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 4.5e-08 61.2 88 38.6
MBI06_g36539_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 4.5e-08 61.2 92 38.0
Psat5g250680 Pisum sativum HOM05D001501 ORTHO05D001329 4.5e-08 61.2 87 40.2
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 5.9e-08 60.8 88 39.8
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 5.9e-08 60.8 88 38.6
TPR.G4514 Trifolium pratense HOM05D001501 ORTHO05D001329 5.9e-08 60.8 94 37.2
MD10G1276400 Malus domestica HOM05D001501 ORTHO05D001329 7.7e-08 60.5 93 38.7
MBI06_g00806_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 1.3e-07 59.7 90 34.4
Sp1g25190 Schrenkiella parvula HOM05D001501 ORTHO05D001329 1.3e-07 59.7 93 34.4
TWI59G0319 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 1.3e-07 59.7 98 36.7
DCAR_005132 Daucus carota HOM05D001501 ORTHO05D001329 1.7e-07 59.3 90 38.9
Manes.17G058500 Manihot esculenta HOM05D001501 ORTHO05D001329 1.7e-07 59.3 93 36.6
Nn1g04509 Nelumbo nucifera HOM05D001501 ORTHO05D001329 1.7e-07 59.3 92 37.0
Nitab4.5_0008568g0060 Nicotiana tabacum HOM05D001501 ORTHO05D001329 1.7e-07 59.3 88 38.6
BcaB07g32514 Brassica carinata HOM05D001501 ORTHO05D001329 2.2e-07 58.9 95 34.7
Manes.16G042211 Manihot esculenta HOM05D001501 ORTHO05D001329 2.2e-07 58.9 94 33.0
Dinv12367 Davidia involucrata HOM05D001501 ORTHO05D001329 2.9e-07 58.5 101 35.6
Glyma.12G212200 Glycine max HOM05D001501 ORTHO05D001329 2.9e-07 58.5 97 40.2
Phvul.005G093900 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 2.9e-07 58.5 97 42.3
Thecc.02G212700 Theobroma cacao HOM05D001501 ORTHO05D001329 2.9e-07 58.5 95 37.9
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 2.9e-07 58.5 87 40.2
BcaC05g26948 Brassica carinata HOM05D001501 ORTHO05D001329 3.8e-07 58.2 95 32.6
C05p27950 Brassica napus HOM05D001501 ORTHO05D001329 3.8e-07 58.2 95 32.6
BolC5t31521H Brassica oleracea HOM05D001501 ORTHO05D001329 3.8e-07 58.2 95 32.6
CDE02G3304 Ceratophyllum demersum HOM05D001501 ORTHO05D001329 3.8e-07 58.2 87 37.9
Ca_00464_v3 Cicer arietinum L. HOM05D001501 ORTHO05D001329 3.8e-07 58.2 93 37.6
Nn3g21114 Nelumbo nucifera HOM05D001501 ORTHO05D001329 3.8e-07 58.2 93 36.6
VMungo1080G0601 Vigna mungo HOM05D001501 ORTHO05D001329 3.8e-07 58.2 97 40.2
Manes.16G042221 Manihot esculenta HOM05D001501 ORTHO05D001329 5.0e-07 57.8 94 34.0
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 5.0e-07 57.8 88 36.4
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 5.0e-07 57.8 85 41.2
TPR.G20003 Trifolium pratense HOM05D001501 ORTHO05D001329 5.0e-07 57.8 86 39.5
A09p37100 Brassica napus HOM05D001501 ORTHO05D001329 6.5e-07 57.4 95 32.6
BraA09t39225Z Brassica rapa HOM05D001501 ORTHO05D001329 6.5e-07 57.4 95 32.6
Medtr2g083910 Medicago truncatula HOM05D001501 ORTHO05D001329 6.5e-07 57.4 85 44.7
Nitab4.5_0000249g0080 Nicotiana tabacum HOM05D001501 ORTHO05D001329 6.5e-07 57.4 97 34.0
SEGI_36018 Sequoiadendron giganteum HOM05D001501 ORTHO05D001329 6.5e-07 57.4 92 31.5
FvH4_5g20610 Fragaria vesca HOM05D001501 ORTHO05D001329 8.5e-07 57.0 93 37.6
PGSC0003DMG400020412 Solanum tuberosum HOM05D001501 ORTHO05D001329 8.5e-07 57.0 98 34.7
TWI23G0154 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 8.5e-07 57.0 98 35.7
Cc05_g08550 Coffea canephora HOM05D001501 ORTHO05D001329 1.1e-06 56.6 92 40.2
FAN18G4527 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.1e-06 56.6 92 34.8
Glyma.13G289500 Glycine max HOM05D001501 ORTHO05D001329 1.1e-06 56.6 96 39.6
PSO170G2394 Papaver somniferum HOM05D001501 ORTHO05D001329 1.1e-06 56.6 105 35.2
Dinv11962 Davidia involucrata HOM05D001501 ORTHO05D001329 1.4e-06 56.2 96 35.4
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 1.4e-06 56.2 90 36.7
Psat1g195160 Pisum sativum HOM05D001501 ORTHO05D001329 1.4e-06 56.2 91 38.5
RcHm_v2.0_Chr5g0011511 Rosa chinensis HOM05D001501 ORTHO05D001329 1.4e-06 56.2 97 34.0
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 1.4e-06 56.2 87 36.8
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 1.4e-06 56.2 88 35.2
Aqoxy4G00253 Aquilegia oxysepala HOM05D001501 ORTHO05D001329 2.5e-06 55.5 109 30.3
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 2.5e-06 55.5 89 36.0
Glyma.08G118000 Glycine max HOM05D001501 ORTHO05D001329 2.5e-06 55.5 97 33.0
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 2.5e-06 55.5 88 34.1
QL08p042327 Quercus lobata HOM05D001501 ORTHO05D001329 2.5e-06 55.5 96 33.3
Solyc07g055270.1 Solanum lycopersicum HOM05D001501 ORTHO05D001329 2.5e-06 55.5 99 37.4
Sopen07g026950 Solanum pennellii HOM05D001501 ORTHO05D001329 2.5e-06 55.5 99 37.4
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 2.5e-06 55.5 85 35.3
Lsat_1_v5_gn_4_65080 Lactuca sativa HOM05D001501 ORTHO05D001329 3.2e-06 55.1 92 33.7
Psat7g069240 Pisum sativum HOM05D001501 ORTHO05D001329 3.2e-06 55.1 94 34.0
Psat7g069280 Pisum sativum HOM05D001501 ORTHO05D001329 3.2e-06 55.1 97 34.0
TAR626G1129 Trochodendron aralioides HOM05D001501 ORTHO05D001329 3.2e-06 55.1 93 34.4
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 4.2e-06 54.7 86 32.6
arahy.Tifrunner.gnm1.ann1.U54Z4W Arachis hypogaea HOM05D001501 ORTHO05D001329 4.2e-06 54.7 95 41.1
Carub.0001s2745 Capsella rubella HOM05D001501 ORTHO05D001329 4.2e-06 54.7 94 30.9
Cfa023580 Carpinus fangiana HOM05D001501 ORTHO05D001329 4.2e-06 54.7 88 35.2
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 4.2e-06 54.7 89 33.7
Hma1.2p1_0178F.1_g078510 Hydrangea macrophylla HOM05D001501 ORTHO05D001329 4.2e-06 54.7 102 33.3
Nitab4.5_0009428g0010 Nicotiana tabacum HOM05D001501 ORTHO05D001329 4.2e-06 54.7 105 32.4
SalBow7G4494 Salvia bowleyana HOM05D001501 ORTHO05D001329 4.2e-06 54.7 103 33.0
Ah.08g211870 Amaranthus hybridus HOM05D001501 ORTHO05D001329 7.2e-06 53.9 136 31.6
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 7.2e-06 53.9 90 37.8
DCAR_021298 Daucus carota HOM05D001501 ORTHO05D001329 7.2e-06 53.9 88 37.5
Medtr2g016760 Medicago truncatula HOM05D001501 ORTHO05D001329 7.2e-06 53.9 93 36.6
Nitab4.5_0007923g0030 Nicotiana tabacum HOM05D001501 ORTHO05D001329 7.2e-06 53.9 93 31.2
Peaxi162Scf00469g00065 Petunia axillaris HOM05D001501 ORTHO05D001329 7.2e-06 53.9 93 33.3
Ca_17901_v3 Cicer arietinum L. HOM05D001501 ORTHO05D001329 9.4e-06 53.5 96 33.3
HanXRQChr17g0559261 Helianthus annuus HOM05D001501 ORTHO05D001329 9.4e-06 53.5 92 34.8
Lalb_Chr18g0054731 Lupinus albus HOM05D001501 ORTHO05D001329 9.4e-06 53.5 96 34.4


User provided reference genes

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