Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 6.3e-202 707.2 356 100.0
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 7.0e-201 703.7 356 99.4
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 4.4e-163 578.2 359 82.2
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 3.2e-161 572.0 361 80.9
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 6.0e-160 567.8 358 82.1
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.1e-152 542.7 334 82.0
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 7.8e-152 540.8 355 78.0
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 7.8e-152 540.8 355 77.2
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 1.7e-151 539.7 355 77.2
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 2.8e-149 532.3 353 76.5
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 1.7e-146 523.1 359 74.1
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 8.4e-146 520.8 330 79.7
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.6e-144 516.5 330 76.7
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.6e-144 516.5 351 74.6
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.5e-144 515.4 353 74.5
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.5e-144 515.4 345 75.1
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 6.0e-144 514.6 351 74.1
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 1.0e-143 513.8 354 72.9
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 1.3e-143 513.5 307 81.8
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.7e-143 513.1 330 76.7
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 5.1e-143 511.5 331 75.8
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 8.7e-143 510.8 332 75.6
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 8.7e-143 510.8 353 74.5
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.1e-142 510.4 345 74.2
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.1e-142 510.4 327 78.0
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.9e-142 509.6 345 74.2
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 2.5e-142 509.2 331 76.1
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 5.6e-142 508.1 335 76.4
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 5.6e-142 508.1 347 74.6
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 7.3e-142 507.7 313 80.2
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 7.3e-142 507.7 334 76.6
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 9.6e-142 507.3 330 76.1
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.3e-141 506.9 356 72.2
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 3.6e-141 505.4 352 73.3
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 4.8e-141 505.0 353 74.5
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 4.8e-141 505.0 352 75.6
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 8.1e-141 504.2 355 73.0
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 8.1e-141 504.2 345 73.3
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.4e-140 503.4 352 72.4
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.4e-140 502.7 356 74.2
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 2.4e-140 502.7 352 73.9
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 3.1e-140 502.3 351 71.8
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.1e-140 502.3 358 73.7
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 5.3e-140 501.5 354 70.3
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 6.9e-140 501.1 367 69.2
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 9.0e-140 500.7 333 76.0
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 1.2e-139 500.4 308 79.5
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 1.5e-139 500.0 355 73.0
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 2.0e-139 499.6 364 71.2
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 3.4e-139 498.8 347 72.3
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 4.5e-139 498.4 336 75.0
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 5.8e-139 498.0 353 71.7
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 7.6e-139 497.7 310 79.0
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 1.7e-138 496.5 360 71.7
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 2.2e-138 496.1 333 75.1
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 3.8e-138 495.4 331 73.7
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 3.8e-138 495.4 351 72.1
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 3.8e-138 495.4 330 74.5
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 6.4e-138 494.6 331 73.7
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 6.4e-138 494.6 333 73.3
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.1e-137 493.8 361 71.2
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 1.1e-137 493.8 297 81.5
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.4e-137 493.4 336 72.9
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 2.4e-137 492.7 335 74.3
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 2.4e-137 492.7 330 74.8
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 3.2e-137 492.3 333 73.0
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 3.2e-137 492.3 332 73.8
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 4.2e-137 491.9 354 70.1
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 5.4e-137 491.5 330 73.3
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 7.1e-137 491.1 330 73.0
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 7.1e-137 491.1 330 73.0
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 9.3e-137 490.7 330 73.6
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 9.3e-137 490.7 342 72.2
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 1.2e-136 490.3 333 73.0
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 1.6e-136 490.0 344 72.7
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 2.1e-136 489.6 335 74.0
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 3.5e-136 488.8 352 71.0
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 4.6e-136 488.4 395 64.6
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 6.0e-136 488.0 312 77.2
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 7.9e-136 487.6 331 72.8
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.0e-135 487.3 333 72.7
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 1.1e-134 483.8 410 63.4
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.5e-134 483.4 358 69.0
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.5e-134 483.4 340 72.1
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 1.9e-134 483.0 327 72.2
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 7.4e-134 481.1 310 75.2
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 9.6e-134 480.7 342 71.3
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 1.6e-133 479.9 311 76.8
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.1e-132 477.2 290 79.3
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 4.0e-132 475.3 324 73.1
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 5.3e-132 474.9 330 73.9
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 1.1e-129 467.2 361 66.2
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 4.2e-129 465.3 339 68.4
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 7.1e-129 464.5 294 75.9
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 7.1e-129 464.5 304 80.9
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 2.7e-128 462.6 276 81.2
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 2.7e-128 462.6 349 66.8
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 6.7e-127 458.0 367 69.8
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 8.7e-127 457.6 294 74.5
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 1.1e-126 457.2 316 73.1
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 9.6e-126 454.1 333 70.3
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 3.7e-125 452.2 347 68.3
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 1.1e-124 450.7 278 78.1
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 4.1e-124 448.7 276 79.3
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 3.4e-123 445.7 300 78.3
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 4.5e-123 445.3 330 68.8
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 7.6e-123 444.5 326 73.0
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 2.5e-121 439.5 323 70.6
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 4.3e-118 428.7 341 68.3
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 4.8e-117 425.2 298 71.8
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 6.5e-114 414.8 292 68.8
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 1.6e-112 410.2 294 66.7
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 1.4e-108 397.1 293 68.3
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.1e-108 396.0 261 77.0
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 3.4e-107 392.5 288 69.1
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.9e-106 389.4 327 63.6
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 4.2e-105 385.6 306 61.4
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 5.5e-105 385.2 251 76.1
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.1e-102 377.5 272 71.0
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 3.7e-101 372.5 233 81.1
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 2.4e-92 343.2 220 79.5
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 7.5e-86 321.6 219 75.3
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.1e-65 254.6 351 49.0
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 3.2e-60 236.5 159 71.7
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.3e-58 230.3 145 76.6
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 4.3e-57 226.1 136 80.9
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.1e-56 223.8 179 67.6
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 2.8e-56 223.4 150 77.3
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 1.6e-48 197.6 138 68.8
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.1e-44 184.9 114 74.6
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 9.2e-44 181.8 114 72.8
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 7.1e-36 155.6 129 57.4
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 1.2e-35 154.8 360 36.7
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 6.2e-32 142.5 118 60.2
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 1.3e-29 134.8 259 34.0
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 1.0e-26 125.2 123 53.7
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 1.3e-26 124.8 161 47.8
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 2.8e-24 117.1 86 65.1
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 5.8e-22 109.4 296 29.7
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.3e-21 108.2 87 59.8
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.1e-20 105.1 64 76.6
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 6.7e-18 95.9 88 61.4
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 8.7e-18 95.5 89 61.8
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 2.5e-17 94.0 53 86.8
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 5.3e-15 86.3 79 49.4
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 5.3e-15 86.3 49 79.6
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 9.0e-15 85.5 49 73.5
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 1.7e-13 81.3 50 70.0
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.1e-09 68.6 37 73.0
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 5.3e-07 59.7 56 60.7
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.2e-06 58.5 31 87.1
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 2.6e-06 57.4 50 60.0


User provided reference genes

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