Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 4.2e-303 1044.6 892 100.0
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 3.7e-142 510.0 914 69.1
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 2.0e-127 461.1 918 66.7
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 1.7e-94 351.7 917 60.6
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 7.1e-93 346.3 921 57.4
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 3.0e-91 340.9 914 60.2
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 3.1e-88 330.9 919 60.1
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 2.6e-87 327.8 919 60.4
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 3.8e-86 323.9 918 58.3
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 3.9e-83 313.9 925 57.5
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 1.4e-80 305.4 481 64.0
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 6.9e-80 303.1 920 57.4
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 9.0e-80 302.8 920 57.4
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 2.2e-78 298.1 810 62.2
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 1.1e-77 295.8 504 60.5
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 2.1e-76 291.6 921 58.2
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 2.1e-76 291.6 911 57.8
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 3.9e-75 287.3 910 57.9
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 1.5e-74 285.4 856 59.2
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 5.6e-74 283.5 910 52.4
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 9.6e-74 282.7 482 62.7
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 3.7e-73 280.8 915 57.6
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 3.7e-73 280.8 924 55.5
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 6.2e-73 280.0 912 57.1
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 1.8e-72 278.5 927 57.6
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 3.1e-72 277.7 908 47.8
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 1.5e-71 275.4 918 50.9
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 2.9e-70 271.2 921 57.3
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 4.9e-70 270.4 470 60.6
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 6.5e-70 270.0 831 59.8
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 5.5e-69 266.9 914 50.9
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 1.2e-68 265.8 915 50.8
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 2.7e-68 264.6 474 59.9
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 1.0e-67 262.7 918 54.1
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 3.0e-67 261.2 926 54.1
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 1.5e-66 258.8 841 60.6
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 2.5e-66 258.1 917 56.4
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 7.4e-66 256.5 933 56.4
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 9.7e-66 256.1 962 52.9
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 1.3e-65 255.8 837 57.8
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 4.8e-65 253.8 543 55.4
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 1.4e-64 252.3 471 58.2
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 3.1e-64 251.1 903 57.3
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 3.1e-64 251.1 481 58.0
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 3.1e-64 251.1 542 55.0
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 1.2e-63 249.2 840 60.2
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 1.2e-63 249.2 841 59.1
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 4.5e-63 247.3 920 55.9
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 5.9e-63 246.9 543 54.5
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 7.7e-63 246.5 482 58.5
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 1.0e-62 246.1 481 57.6
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 1.3e-62 245.7 467 61.2
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 8.5e-62 243.0 918 55.9
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 1.9e-61 241.9 921 56.4
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 1.9e-61 241.9 481 55.7
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 1.4e-59 235.7 505 53.3
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 3.7e-57 227.6 866 45.0
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 9.1e-56 223.0 822 56.2
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 2.0e-55 221.9 506 53.4
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.6e-55 221.5 507 53.3
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 6.5e-54 216.9 910 55.3
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 1.1e-53 216.1 916 53.7
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 1.4e-53 215.7 534 49.6
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 1.9e-53 215.3 913 54.3
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 3.2e-53 214.5 925 45.9
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 3.2e-53 214.5 842 52.1
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 1.2e-52 212.6 810 60.5
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 2.1e-52 211.8 263 47.5
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 6.1e-52 210.3 916 53.7
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 2.3e-51 208.4 530 49.6
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 2.3e-51 208.4 530 49.6
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 3.0e-51 208.0 662 52.4
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 6.7e-51 206.8 473 60.3
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 6.7e-51 206.8 506 48.6
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 2.6e-50 204.9 673 49.3
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 1.3e-49 202.6 508 56.3
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 8.2e-49 199.9 844 58.9
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 1.8e-48 198.7 848 58.1
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 4.1e-48 197.6 506 51.0
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 2.0e-47 195.3 845 58.9
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 6.7e-43 180.3 506 51.2
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 6.3e-41 173.7 488 55.5
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 2.9e-38 164.9 259 35.5
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 1.4e-35 156.0 255 41.6
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 3.0e-35 154.8 490 47.8
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 2.2e-30 138.7 241 31.1
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 8.8e-27 126.7 303 49.8
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 6.3e-25 120.6 97 58.8
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 1.3e-22 112.8 298 65.4
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 1.7e-22 112.5 219 33.3
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 3.3e-21 108.2 210 32.4
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 2.7e-15 88.6 92 45.7
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 2.3e-14 85.5 150 34.0
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 2.1e-12 79.0 150 32.0
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 4.7e-12 77.8 147 34.0
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 6.1e-12 77.4 140 33.6
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 1.8e-11 75.9 140 33.6
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 3.1e-11 75.1 151 31.1
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 4.0e-11 74.7 140 32.9
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 5.8e-10 70.9 134 35.1
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 1.7e-09 69.3 73 41.1
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 1.7e-09 69.3 180 24.4
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 4.9e-09 67.8 69 47.8
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 1.1e-08 66.6 141 30.5
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 1.9e-08 65.9 165 32.1
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 7.0e-08 63.9 260 20.4
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 2.0e-07 62.4 103 28.2
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 2.3e-06 58.9 120 30.0
AagrBONN_evm.TU.Sc2ySwM_228.5701 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.9e-06 58.2 96 32.3
EL10Ac4g09424 Beta vulgaris HOM05D006888 ORTHO05D008371 3.9e-06 58.2 107 29.0
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 5.0e-06 57.8 112 34.8
Actinidia14742 Actinidia chinensis HOM05D008483 ORTHO05D018225 6.6e-06 57.4 123 30.1
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 6.6e-06 57.4 262 21.4
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 6.6e-06 57.4 102 30.4
SalBow3G1200 Salvia bowleyana HOM05D000855 ORTHO05D008530 6.6e-06 57.4 102 32.4
SalBow3G1712 Salvia bowleyana HOM05D000855 ORTHO05D008530 6.6e-06 57.4 102 32.4
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 6.6e-06 57.4 102 30.4
Ah.10g033640 Amaranthus hybridus HOM05D007570 ORTHO05D009365 8.6e-06 57.0 104 32.7
BolC4t24488H Brassica oleracea HOM05D031115 ORTHO05D020197 8.6e-06 57.0 99 29.3
Duzib093G1875 Durio zibethinus HOM05D000855 ORTHO05D008530 8.6e-06 57.0 105 29.5
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 8.6e-06 57.0 103 23.3
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 8.6e-06 57.0 103 23.3
Nitab4.5_0003261g0020 Nicotiana tabacum HOM05D006842 ORTHO05D008908 8.6e-06 57.0 46 54.3
HPP92_021332 Vanilla planifolia HOM05D007212 ORTHO05D000003 8.6e-06 57.0 115 30.4


User provided reference genes

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