Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 3.2e-255 884.8 518 100.0
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.1e-106 391.3 679 52.0
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.8e-104 384.0 601 52.6
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.5e-103 380.9 610 54.9
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.8e-101 374.0 719 48.3
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 5.4e-101 372.5 624 49.7
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.0e-100 370.5 671 47.7
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 2.7e-100 370.2 701 48.1
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.5e-100 369.8 664 48.2
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.3e-99 367.9 645 50.1
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 9.5e-98 361.7 599 47.6
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.2e-97 361.3 675 46.2
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.7e-97 359.4 683 46.7
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 6.8e-96 355.5 636 46.2
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 2.0e-92 344.0 718 46.0
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.9e-90 337.4 694 46.3
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 7.3e-90 335.5 691 45.7
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 4.7e-89 332.8 660 45.5
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.7e-86 324.3 668 46.0
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 8.3e-86 322.0 612 43.3
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 1.1e-85 321.6 660 47.4
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.0e-83 315.1 606 48.5
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 3.9e-83 313.2 605 45.5
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.6e-81 307.8 599 47.1
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.6e-81 307.8 608 44.4
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 2.1e-81 307.4 541 46.0
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.2e-79 301.6 656 46.8
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.3e-78 298.1 629 45.2
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 2.2e-78 297.4 718 42.3
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 2.9e-78 297.0 632 46.0
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 2.9e-78 297.0 551 46.5
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 3.7e-78 296.6 693 41.8
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 3.2e-77 293.5 687 42.6
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.1e-77 293.1 631 43.1
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.1e-76 290.8 694 41.8
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.1e-76 290.8 694 41.8
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 2.7e-76 290.4 698 45.6
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 3.5e-76 290.0 629 45.2
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 7.8e-76 288.9 675 40.6
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.7e-75 287.7 620 46.5
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.7e-75 287.7 661 43.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 5.1e-75 286.2 662 39.9
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 8.6e-75 285.4 610 45.2
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.6e-73 281.2 679 43.3
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 2.1e-73 280.8 682 39.7
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.1e-72 278.5 690 39.1
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 8.9e-72 275.4 576 41.1
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.2e-71 275.0 737 41.5
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.5e-71 274.6 657 42.9
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 3.4e-71 273.5 597 41.9
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.4e-71 273.1 624 44.1
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 3.8e-70 270.0 688 42.2
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.4e-69 267.3 660 43.2
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 5.4e-69 266.2 582 46.6
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 7.1e-69 265.8 608 42.8
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 7.1e-69 265.8 603 42.8
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 3.5e-68 263.5 668 43.1
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 6.0e-68 262.7 748 38.1
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 7.8e-68 262.3 702 42.6
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.7e-67 261.2 659 43.1
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 2.3e-67 260.8 535 43.0
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 3.3e-66 256.9 639 39.9
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 4.3e-66 256.5 688 39.4
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.2e-65 255.0 731 41.3
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 1.2e-65 255.0 596 39.8
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 1.2e-65 255.0 671 39.3
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 3.6e-65 253.4 734 40.9
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 6.2e-65 252.7 747 39.0
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.1e-64 251.9 676 38.0
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 2.4e-64 250.8 765 40.3
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.4e-64 250.8 729 38.4
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 9.0e-64 248.8 598 43.0
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 5.8e-63 246.1 503 42.7
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 9.9e-63 245.4 582 40.5
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 2.2e-62 244.2 746 36.2
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 4.9e-62 243.0 692 39.9
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.4e-61 241.5 517 45.8
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 7.1e-61 239.2 614 36.8
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.2e-60 238.4 655 42.0
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.3e-59 235.0 568 39.4
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.0e-59 233.8 481 47.2
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 5.6e-58 229.6 582 43.6
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.8e-57 227.3 507 44.2
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 6.2e-57 226.1 562 38.3
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.1e-56 225.3 573 40.8
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.4e-56 224.2 499 42.7
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 4.0e-56 223.4 690 39.7
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 5.3e-56 223.0 554 44.0
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 5.3e-56 223.0 738 37.3
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 6.9e-56 222.6 679 38.4
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.2e-55 221.9 664 34.9
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.4e-55 220.3 493 44.8
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 4.5e-55 219.9 676 38.0
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 5.8e-55 219.5 598 41.6
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.8e-54 216.9 625 37.1
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 8.4e-54 215.7 601 35.8
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.4e-53 214.9 628 36.6
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.9e-53 214.5 597 38.7
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 2.4e-53 214.2 651 36.7
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 3.2e-53 213.8 612 37.3
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 6.0e-52 209.5 696 35.2
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 2.3e-51 207.6 586 39.6
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.9e-50 204.5 638 40.1
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 3.3e-50 203.8 566 38.5
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 4.3e-50 203.4 682 34.8
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 5.6e-50 203.0 567 42.0
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.8e-49 200.7 498 38.2
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 3.7e-49 200.3 542 43.0
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 3.7e-49 200.3 371 51.8
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.8e-49 199.9 619 41.0
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 5.3e-48 196.4 544 38.1
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 5.3e-48 196.4 596 36.4
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 6.9e-48 196.1 397 40.8
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 6.9e-48 196.1 562 37.2
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 4.5e-47 193.4 601 34.6
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 7.6e-47 192.6 586 39.4
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 9.9e-47 192.2 591 39.9
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.9e-46 189.9 614 35.0
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 7.1e-45 186.0 541 39.9
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 3.5e-44 183.7 603 35.2
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 7.9e-44 182.6 644 37.9
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 7.9e-44 182.6 456 40.1
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.0e-43 182.2 674 34.7
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.3e-43 181.8 606 34.2
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.9e-43 180.3 628 39.3
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 6.7e-43 179.5 703 33.0
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 3.3e-42 177.2 564 36.2
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 5.3e-40 169.9 599 37.7
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 9.0e-40 169.1 284 47.5
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 9.0e-40 169.1 501 35.9
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 1.2e-39 168.7 590 33.9
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 5.8e-39 166.4 318 42.1
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.0e-38 165.6 604 37.1
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.3e-38 165.2 499 35.3
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.7e-38 164.9 691 35.0
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.1e-37 162.2 470 40.2
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 6.0e-36 156.4 435 39.5
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.0e-36 156.4 243 44.0
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 8.2e-33 146.0 463 39.3
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.1e-32 144.1 208 45.2
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 4.1e-32 143.7 475 38.3
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 4.1e-32 143.7 475 38.3
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 3.4e-31 140.6 469 40.7
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 5.9e-31 139.8 279 41.6
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 6.1e-28 129.8 447 41.6
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 7.9e-28 129.4 496 41.1
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 6.7e-27 126.3 683 28.4
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.9e-26 124.8 596 35.6
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.3e-26 124.0 650 28.5
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 4.5e-23 113.6 283 37.5
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 8.5e-22 109.4 513 33.7
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 4.2e-21 107.1 374 42.2
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.7e-19 99.8 501 34.3
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 1.5e-18 98.6 96 57.3
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.4e-18 96.3 117 51.3
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 9.1e-16 89.4 142 49.3
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 9.1e-16 89.4 130 43.8
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.6e-15 87.8 180 41.1
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 7.2e-13 79.7 446 31.4
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 8.0e-12 76.3 154 39.0
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 2.6e-10 71.2 440 31.8
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.3e-09 68.9 112 48.2
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 1.7e-09 68.6 64 60.9
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.7e-09 68.6 69 59.4
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.2e-09 68.2 58 67.2
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 2.2e-09 68.2 71 54.9
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.8e-09 67.8 91 52.7
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 4.8e-09 67.0 172 36.0
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 6.3e-09 66.6 489 30.1
BraA05t20886Z Brassica rapa HOM05D003089 ORTHO05D001766 8.2e-09 66.2 191 43.5
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 3.1e-08 64.3 123 43.9
A05p19800 Brassica napus HOM05D011073 ORTHO05D013800 7.0e-08 63.2 187 44.9
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 2.0e-07 61.6 321 29.6


User provided reference genes

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