Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.0e-129 465.3 253 100.0
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 9.7e-96 354.0 250 78.8
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 1.7e-92 343.2 250 76.4
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 1.1e-91 340.5 251 74.1
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 4.2e-91 338.6 250 75.2
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.9e-89 332.0 249 75.1
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 4.3e-88 328.6 245 75.1
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.6e-85 319.3 307 67.1
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 1.3e-84 317.0 253 71.1
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 2.1e-82 309.7 252 71.0
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 1.8e-81 306.6 258 66.3
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.5e-80 303.5 248 67.7
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 2.2e-79 299.7 248 67.7
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 2.2e-79 299.7 250 66.0
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 8.2e-79 297.7 249 66.7
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 1.4e-78 297.0 248 65.3
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 6.9e-78 294.7 248 64.9
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 9.1e-78 294.3 253 65.6
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 9.1e-78 294.3 253 65.6
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 1.2e-77 293.9 246 65.9
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 3.4e-77 292.4 249 65.5
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 4.5e-77 292.0 253 62.8
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 7.7e-77 291.2 248 63.7
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 7.7e-77 291.2 253 64.4
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 1.0e-76 290.8 253 62.8
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 1.7e-76 290.0 253 62.5
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.8e-76 288.9 249 64.3
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.1e-75 287.3 253 63.6
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 1.4e-75 287.0 253 62.5
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 2.5e-75 286.2 253 63.6
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 4.2e-75 285.4 249 64.7
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 4.2e-75 285.4 253 62.5
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 5.5e-75 285.0 251 64.1
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 7.2e-75 284.6 253 62.8
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 9.4e-75 284.3 250 62.0
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 9.4e-75 284.3 259 62.2
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 9.4e-75 284.3 283 58.7
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 9.4e-75 284.3 246 64.2
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.6e-74 283.5 253 62.8
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 1.6e-74 283.5 250 64.0
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 3.6e-74 282.3 253 63.2
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 3.6e-74 282.3 279 59.9
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 3.6e-74 282.3 253 62.1
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 4.7e-74 282.0 253 62.5
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 2.3e-73 279.6 249 61.8
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 3.0e-73 279.3 253 62.5
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 3.9e-73 278.9 256 60.9
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 3.9e-73 278.9 361 50.1
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 5.2e-73 278.5 253 62.1
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 8.8e-73 277.7 253 59.7
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 1.5e-72 276.9 253 60.9
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 2.0e-72 276.6 251 62.5
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 4.4e-72 275.4 253 60.9
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 5.7e-72 275.0 250 57.6
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 1.3e-71 273.9 250 57.6
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 2.2e-71 273.1 253 59.3
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 2.8e-71 272.7 253 59.7
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 4.8e-71 271.9 251 61.8
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 6.3e-71 271.6 253 61.3
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 1.4e-70 270.4 249 57.4
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.4e-70 269.6 241 61.8
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.4e-70 269.6 253 60.1
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.4e-70 269.6 253 60.1
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 2.4e-70 269.6 253 58.9
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 3.1e-70 269.2 249 58.6
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 3.1e-70 269.2 249 58.6
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 4.1e-70 268.9 249 62.7
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 9.1e-70 267.7 245 60.8
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 1.2e-69 267.3 222 65.3
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.2e-69 267.3 244 62.7
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.2e-69 267.3 247 59.9
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 1.6e-69 266.9 207 68.1
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 2.0e-69 266.5 250 60.8
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.6e-69 266.2 253 58.1
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 2.6e-69 266.2 389 48.1
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 5.9e-69 265.0 253 60.1
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 5.9e-69 265.0 253 60.1
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 1.0e-68 264.2 253 60.1
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 1.7e-68 263.5 192 70.8
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 2.9e-68 262.7 253 57.7
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 1.1e-67 260.8 251 59.8
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 1.5e-67 260.4 249 57.4
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 1.9e-67 260.0 249 57.0
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 2.5e-67 259.6 283 54.8
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.6e-66 256.9 253 55.3
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 2.1e-66 256.5 248 59.7
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 2.7e-66 256.1 246 59.8
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 4.7e-66 255.4 246 56.1
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 6.1e-66 255.0 249 57.0
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 6.1e-66 255.0 249 57.0
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 2.3e-65 253.1 251 59.0
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 2.3e-65 253.1 249 55.4
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 2.3e-65 253.1 248 56.0
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 3.0e-65 252.7 264 55.3
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 3.0e-65 252.7 241 58.9
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 3.0e-65 252.7 246 58.9
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 6.7e-65 251.5 252 55.6
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 8.8e-65 251.1 253 56.5
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 1.2e-64 250.8 249 56.2
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 2.6e-64 249.6 250 56.4
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 5.7e-64 248.4 253 56.5
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 9.7e-64 247.7 253 55.7
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 9.7e-64 247.7 253 56.1
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 1.3e-63 247.3 253 56.5
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 1.3e-63 247.3 253 56.1
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 1.3e-63 247.3 253 56.1
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.3e-63 247.3 251 54.6
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 2.2e-63 246.5 253 56.5
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 2.2e-63 246.5 253 56.5
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 2.8e-63 246.1 253 55.7
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 2.8e-63 246.1 253 54.5
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 2.8e-63 246.1 249 53.0
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 4.8e-63 245.4 253 55.3
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 8.2e-63 244.6 253 56.1
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 8.2e-63 244.6 247 54.7
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 1.4e-62 243.8 253 53.8
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 1.8e-62 243.4 253 54.5
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 2.4e-62 243.0 280 52.9
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 4.1e-62 242.3 278 52.2
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 4.1e-62 242.3 253 55.3
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 1.2e-61 240.7 253 53.8
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 1.6e-61 240.4 256 53.9
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 2.0e-61 240.0 253 54.9
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 2.0e-61 240.0 253 54.9
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 2.0e-61 240.0 251 56.2
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 1.0e-60 237.7 253 54.2
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 1.0e-60 237.7 253 54.2
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 2.2e-60 236.5 273 51.6
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 2.2e-60 236.5 251 52.6
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 3.8e-60 235.7 254 55.1
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 2.5e-59 233.0 252 52.8
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 9.4e-59 231.1 253 54.9
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 1.2e-58 230.7 257 51.8
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 6.1e-58 228.4 257 51.4
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 1.4e-57 227.3 246 53.3
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.0e-56 223.4 257 50.2
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 4.4e-56 222.2 255 51.8
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.3e-55 220.7 354 43.2
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 8.3e-55 218.0 200 61.0
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 1.2e-53 214.2 203 53.2
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 1.6e-53 213.8 251 53.0
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 9.5e-51 204.5 206 52.9
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 4.0e-49 199.1 297 44.4
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.1e-46 191.0 188 56.4
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 1.9e-43 180.3 251 47.0
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 5.6e-43 178.7 196 52.6
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.0e-41 174.5 219 43.8
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.4e-41 174.1 198 46.5
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 1.1e-38 164.5 151 59.6
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 5.4e-38 162.2 246 43.1
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 2.7e-37 159.8 188 45.2
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 7.8e-37 158.3 116 69.8
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 1.0e-36 157.9 141 58.9
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 4.3e-35 152.5 162 53.7
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.4e-33 147.5 144 56.2
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 3.4e-32 142.9 144 56.9
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 5.8e-32 142.1 215 42.8
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 5.4e-30 135.6 157 45.9
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 5.4e-30 135.6 110 64.5
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.5e-27 127.5 245 32.7
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 9.5e-27 124.8 183 36.6
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.1e-26 123.6 105 60.0
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 5.8e-24 115.5 190 33.2
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.0e-20 104.8 87 62.1
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 3.9e-20 102.8 72 70.8
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 2.5e-19 100.1 201 31.8
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 1.2e-18 97.8 72 68.1
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.6e-18 96.3 70 70.0
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.6e-18 96.3 74 64.9
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 4.7e-18 95.9 197 33.5
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.1e-17 94.7 70 67.1
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.4e-17 93.6 94 54.3
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.4e-17 93.6 70 67.1
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 1.5e-16 90.9 104 55.8
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 3.0e-12 76.6 55 69.1
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 3.9e-12 76.3 66 60.6
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 3.3e-11 73.2 66 59.1
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 1.8e-09 67.4 72 55.6
Cre11.g467569 Chlamydomonas reinhardtii HOM05D003160 ORTHO05D005967 2.4e-06 57.0 194 25.3


User provided reference genes

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