Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 5.3e-156 554.3 278 100.0
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 4.7e-128 461.5 237 97.0
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 9.2e-108 394.0 281 70.5
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 2.7e-107 392.5 285 69.8
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.5e-105 386.7 279 71.7
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.4e-92 343.6 281 63.7
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 1.6e-88 330.1 303 56.8
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 8.1e-88 327.8 249 66.7
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 4.5e-86 322.0 237 68.8
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 2.2e-85 319.7 304 58.9
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.1e-84 317.4 224 70.5
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.4e-84 317.0 224 69.6
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 3.2e-84 315.8 305 56.1
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 3.2e-84 315.8 209 73.7
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 4.2e-84 315.5 256 65.6
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 5.5e-84 315.1 224 70.1
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 1.6e-83 313.5 254 63.8
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 2.1e-83 313.2 276 58.7
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 3.5e-83 312.4 261 60.2
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.0e-82 309.3 305 55.1
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.1e-81 307.4 207 72.0
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 5.6e-81 305.1 273 59.3
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.3e-80 303.9 271 59.4
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.6e-80 303.5 227 68.7
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 2.8e-80 302.8 205 71.2
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 2.8e-80 302.8 304 53.0
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 4.0e-79 298.9 216 68.1
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 4.0e-79 298.9 312 53.5
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 4.0e-79 298.9 225 65.3
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 5.3e-79 298.5 205 70.2
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 9.0e-79 297.7 243 64.2
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 2.0e-78 296.6 249 60.6
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 3.4e-78 295.8 195 71.8
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 7.6e-78 294.7 244 63.1
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 7.6e-78 294.7 284 53.9
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 7.6e-78 294.7 253 58.1
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 4.9e-77 292.0 212 65.6
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.1e-76 290.8 223 64.6
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 1.4e-76 290.4 281 54.1
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 1.9e-76 290.0 253 56.9
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.9e-76 290.0 195 70.8
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 2.5e-76 289.7 253 56.9
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 2.5e-76 289.7 240 60.0
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 2.5e-76 289.7 195 70.3
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 3.2e-76 289.3 230 64.8
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 3.2e-76 289.3 304 52.3
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 1.2e-75 287.3 217 64.1
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 2.1e-75 286.6 255 58.0
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 3.5e-75 285.8 271 53.9
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 3.5e-75 285.8 198 68.7
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 3.5e-75 285.8 230 61.7
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 3.5e-75 285.8 195 67.2
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 4.6e-75 285.4 216 64.8
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 1.0e-74 284.3 201 65.7
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 3.0e-74 282.7 276 53.3
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 3.9e-74 282.3 208 66.3
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 8.7e-74 281.2 186 72.0
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 1.5e-73 280.4 210 65.2
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 1.5e-73 280.4 188 71.3
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 1.9e-73 280.0 278 52.5
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.9e-73 280.0 195 66.7
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.9e-73 280.0 202 67.8
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.9e-73 280.0 208 66.3
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 1.9e-73 280.0 187 67.9
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 2.5e-73 279.6 188 70.7
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 4.3e-73 278.9 193 68.9
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 4.3e-73 278.9 195 68.2
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 4.3e-73 278.9 195 68.2
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 4.3e-73 278.9 195 68.2
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 5.7e-73 278.5 227 61.2
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 5.7e-73 278.5 192 68.2
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 5.7e-73 278.5 192 68.2
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 5.7e-73 278.5 174 75.9
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 5.7e-73 278.5 190 73.2
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 1.6e-72 276.9 258 57.0
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 1.1e-71 274.2 187 66.8
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 3.1e-71 272.7 195 66.7
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 3.1e-71 272.7 214 62.1
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 4.1e-71 272.3 188 68.1
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 5.3e-71 271.9 194 67.5
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 1.2e-70 270.8 189 67.7
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 2.0e-70 270.0 242 57.0
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 2.6e-70 269.6 189 71.4
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 3.4e-70 269.2 248 59.3
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 2.2e-69 266.5 169 74.0
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 2.2e-69 266.5 189 67.7
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 2.9e-69 266.2 187 67.4
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 3.8e-69 265.8 188 66.5
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 5.0e-69 265.4 188 66.5
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 1.9e-68 263.5 213 61.0
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.5e-68 263.1 271 52.0
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 4.2e-68 262.3 225 56.4
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 5.5e-68 261.9 272 52.2
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 5.5e-68 261.9 223 61.4
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 5.5e-68 261.9 204 60.8
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 7.2e-68 261.5 192 69.3
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 7.2e-68 261.5 181 69.6
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 1.2e-67 260.8 186 68.3
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 3.6e-67 259.2 189 70.4
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 4.6e-67 258.8 223 57.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.6e-67 258.8 223 57.8
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.1e-67 258.5 223 57.8
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 7.9e-67 258.1 186 67.7
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.0e-66 257.7 195 63.6
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.0e-66 257.7 207 63.8
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 1.0e-66 257.7 195 64.6
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 3.0e-66 256.1 207 63.8
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 6.7e-66 255.0 178 68.5
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.1e-63 245.7 268 50.7
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.1e-60 237.7 160 68.8
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 2.5e-60 236.5 188 63.3
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.2e-59 234.2 175 68.0
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 3.7e-56 222.6 134 79.1
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 1.1e-55 221.1 168 61.3
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 3.1e-55 219.5 258 48.8
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 4.1e-55 219.2 163 68.7
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 5.0e-53 212.2 170 59.4
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 6.5e-53 211.8 218 52.3
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 1.4e-52 210.7 157 67.5
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 2.7e-51 206.5 158 64.6
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 8.0e-51 204.9 157 65.6
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 7.0e-47 191.8 158 61.4
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.0e-45 185.7 109 78.9
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 5.0e-45 185.7 118 75.4
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 9.1e-39 164.9 93 79.6
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.1e-31 139.8 188 44.1
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 1.1e-28 131.3 92 62.0
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.1e-28 131.3 133 47.4
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.5e-28 130.2 112 59.8
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.5e-28 130.2 112 59.8
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 2.5e-28 130.2 137 46.7
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 2.8e-27 126.7 158 41.1
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 6.1e-27 125.6 230 41.3
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 8.9e-26 121.7 94 61.7
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 2.0e-25 120.6 107 58.9
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 3.9e-21 106.3 99 57.6
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 2.3e-18 97.1 92 55.4
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 1.9e-15 87.4 84 54.8
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.9e-12 77.4 224 34.4
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 5.2e-10 69.3 41 68.3
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 8.3e-08 62.0 37 67.6
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 1.2e-06 58.2 56 53.6


User provided reference genes

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