Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G2287 Salvia bowleyana HOM05D006431 ORTHO05D007918 8.7e-240 833.2 404 100.0
MSTRG.26617 Avicennia marina HOM05D006431 ORTHO05D007918 7.0e-181 637.5 411 74.7
Migut.L01812 Erythranthe guttata HOM05D006431 ORTHO05D007918 3.6e-177 625.2 412 72.6
SGA_v2.0_scaffold35G14028 Striga asiatica HOM05D006431 ORTHO05D007918 8.8e-176 620.5 411 72.7
Peaxi162Scf01662g00115 Petunia axillaris HOM05D006431 ORTHO05D007918 1.6e-169 599.7 419 69.2
CAN.G841.8 Capsicum annuum HOM05D006431 ORTHO05D007918 2.1e-169 599.4 420 68.6
Sopen10g032630 Solanum pennellii HOM05D006431 ORTHO05D007918 2.3e-168 595.9 419 68.7
Solyc10g083160.2 Solanum lycopersicum HOM05D006431 ORTHO05D007918 6.8e-168 594.3 419 68.7
Cc00_g18360 Coffea canephora HOM05D006431 ORTHO05D007918 1.3e-163 580.1 424 67.5
Nitab4.5_0001801g0020 Nicotiana tabacum HOM05D006431 ORTHO05D007918 2.3e-163 579.3 428 66.4
QL07p037629 Quercus lobata HOM05D006431 ORTHO05D007918 1.2e-161 573.5 420 66.2
unitig_899.g15199 Utricularia gibba HOM05D006431 ORTHO05D007918 2.1e-161 572.8 412 67.2
Actinidia04011 Actinidia chinensis HOM05D006431 ORTHO05D007918 4.7e-161 571.6 423 65.7
Actinidia03906 Actinidia chinensis HOM05D006431 ORTHO05D007918 6.1e-161 571.2 423 65.7
Atru.chr8.1414 Acer truncatum HOM05D006431 ORTHO05D007918 2.9e-158 562.4 422 63.3
CSS0044043 Camellia sinensis var. sinensis HOM05D006431 ORTHO05D007918 1.4e-157 560.1 423 65.5
Lj1g0021923 Lotus japonicus HOM05D006431 ORTHO05D007918 2.4e-157 559.3 421 63.4
DCAR_013426 Daucus carota HOM05D006431 ORTHO05D007918 3.2e-157 558.9 418 66.3
Glyma.03G199700 Glycine max HOM05D006431 ORTHO05D007918 9.2e-157 557.4 423 64.5
TPR.G23342 Trifolium pratense HOM05D006431 ORTHO05D007918 1.6e-156 556.6 422 64.0
GSVIVG01033921001 Vitis vinifera HOM05D006431 ORTHO05D007918 2.7e-156 555.8 423 64.1
Glyma.19G197300 Glycine max HOM05D006431 ORTHO05D007918 4.6e-156 555.1 423 65.0
Manes.08G030500 Manihot esculenta HOM05D006431 ORTHO05D007918 4.6e-156 555.1 423 64.3
MD14G1033800 Malus domestica HOM05D006431 ORTHO05D007918 7.8e-156 554.3 424 65.3
Psat3g030600 Pisum sativum HOM05D006431 ORTHO05D007918 3.0e-155 552.4 422 63.7
Thecc.05G099600 Theobroma cacao HOM05D006431 ORTHO05D007918 3.9e-155 552.0 423 64.3
CANSAT64G0076 Cannabis sativa HOM05D006431 ORTHO05D007918 1.1e-154 550.4 427 63.2
Medtr7g105640 Medicago truncatula HOM05D006431 ORTHO05D007918 1.1e-154 550.4 422 62.8
ClCG10G018580 Citrullus lanatus HOM05D006431 ORTHO05D007918 3.3e-154 548.9 420 62.9
FvH4_6g19780 Fragaria vesca HOM05D006431 ORTHO05D007918 3.3e-154 548.9 424 63.0
FAN02G3461 Fragaria x ananassa HOM05D006431 ORTHO05D007918 3.3e-154 548.9 424 63.2
Cfa016661 Carpinus fangiana HOM05D006431 ORTHO05D007918 7.3e-154 547.7 422 63.7
Rhsim03G0067800 Rhododendron simsii HOM05D006431 ORTHO05D007918 7.3e-154 547.7 425 64.2
VMungo1383G3444 Vigna mungo HOM05D006431 ORTHO05D007918 9.5e-154 547.4 423 63.6
Gorai.006G151400 Gossypium raimondii HOM05D006431 ORTHO05D007918 3.6e-153 545.4 422 63.5
PSO801G0006 Papaver somniferum HOM05D006431 ORTHO05D007918 3.6e-153 545.4 423 61.9
PSO801G0231 Papaver somniferum HOM05D006431 ORTHO05D007918 3.6e-153 545.4 423 61.9
Sed0017910 Sechium edule HOM05D006431 ORTHO05D007918 4.7e-153 545.0 421 63.7
arahy.Tifrunner.gnm1.ann1.P24J4F Arachis hypogaea HOM05D006431 ORTHO05D007918 1.4e-152 543.5 424 63.2
FAN05G2067 Fragaria x ananassa HOM05D006431 ORTHO05D007918 1.8e-152 543.1 424 63.2
Prupe.7G099200 Prunus persica HOM05D006431 ORTHO05D007918 1.8e-152 543.1 412 66.0
Haze_19670 Corylus avellana HOM05D006431 ORTHO05D007918 2.3e-152 542.7 476 58.0
CiPaw.10G014500 Carya illinoinensis HOM05D006431 ORTHO05D007918 6.8e-152 541.2 422 63.7
RcHm_v2.0_Chr3g0475131 Rosa chinensis HOM05D006431 ORTHO05D007918 6.8e-152 541.2 424 62.7
FAN05G1952 Fragaria x ananassa HOM05D006431 ORTHO05D007918 8.9e-152 540.8 424 63.2
Phvul.001G193600 Phaseolus vulgaris HOM05D006431 ORTHO05D007918 3.4e-151 538.9 423 63.4
Ciclev10011702m.g Citrus clementina HOM05D006431 ORTHO05D007918 5.8e-151 538.1 405 64.7
PGR004G1888 Punica granatum HOM05D006431 ORTHO05D007918 7.5e-151 537.7 422 62.8
TWI74G1016 Tripterygium wilfordii HOM05D006431 ORTHO05D007918 7.5e-151 537.7 423 63.6
THA.LOC104826813 Tarenaya hassleriana HOM05D006431 ORTHO05D007918 2.9e-150 535.8 420 62.9
CsaV3_3G037660 Cucumis sativus L. HOM05D006431 ORTHO05D007918 4.9e-150 535.0 420 61.7
BraA10t45060Z Brassica rapa HOM05D006431 ORTHO05D007918 6.4e-150 534.6 419 62.5
Potri.006G206200 Populus trichocarpa HOM05D006431 ORTHO05D007918 6.4e-150 534.6 423 62.4
Sp6g36610 Schrenkiella parvula HOM05D006431 ORTHO05D007918 6.4e-150 534.6 423 61.2
arahy.Tifrunner.gnm1.ann1.262DHG Arachis hypogaea HOM05D006431 ORTHO05D007918 1.1e-149 533.9 449 59.2
Lalb_Chr20g0111521 Lupinus albus HOM05D006431 ORTHO05D007918 3.2e-149 532.3 422 60.9
C09p70630 Brassica napus HOM05D006431 ORTHO05D007918 4.1e-149 531.9 422 61.8
Gohir.A09G137300 Gossypium hirsutum HOM05D006431 ORTHO05D007918 4.1e-149 531.9 428 62.1
BcaC06g32336 Brassica carinata HOM05D006431 ORTHO05D007918 7.0e-149 531.2 420 61.9
BolC9t59819H Brassica oleracea HOM05D006431 ORTHO05D007918 7.0e-149 531.2 420 61.9
BcaC06g32355 Brassica carinata HOM05D006431 ORTHO05D007918 1.2e-148 530.4 428 60.7
Carub.0006s0514 Capsella rubella HOM05D006431 ORTHO05D007918 1.6e-148 530.0 423 61.5
AUR62028512 Chenopodium quinoa HOM05D006431 ORTHO05D007918 1.6e-148 530.0 423 62.4
Eucgr.A02614 Eucalyptus grandis HOM05D006431 ORTHO05D007918 2.7e-148 529.3 424 61.8
CARHR206960 Cardamine hirsuta HOM05D006431 ORTHO05D007918 3.5e-148 528.9 423 61.2
MELO3C009510.2 Cucumis melo HOM05D006431 ORTHO05D007918 1.0e-147 527.3 426 61.0
AUR62006262 Chenopodium quinoa HOM05D006431 ORTHO05D007918 1.3e-147 526.9 423 62.4
Aqoxy2G01023 Aquilegia oxysepala HOM05D006431 ORTHO05D007918 6.6e-147 524.6 424 59.7
EL10Ac7g16823 Beta vulgaris HOM05D006431 ORTHO05D007918 6.6e-147 524.6 422 61.4
HanXRQChr01g0025171 Helianthus annuus HOM05D006431 ORTHO05D007918 8.6e-147 524.2 420 61.2
Thhalv10013633m.g Eutrema salsugineum HOM05D006431 ORTHO05D007918 1.5e-146 523.5 424 59.7
vmacro07456 Vaccinium macrocarpon HOM05D006431 ORTHO05D007918 7.3e-146 521.2 462 56.3
ATR0772G016 Amborella trichopoda HOM05D006431 ORTHO05D007918 1.2e-145 520.4 418 60.5
ECA248G2099 Erigeron canadensis HOM05D006431 ORTHO05D007918 1.6e-145 520.0 421 60.1
AT5G06260 Arabidopsis thaliana HOM05D006431 ORTHO05D007918 3.6e-145 518.8 423 59.8
Ah.15g090560 Amaranthus hybridus HOM05D006431 ORTHO05D007918 4.7e-145 518.5 435 59.1
Lsat_1_v5_gn_1_57580 Lactuca sativa HOM05D006431 ORTHO05D007918 4.7e-145 518.5 407 61.4
AL6G16280 Arabidopsis lyrata HOM05D006431 ORTHO05D007918 8.1e-145 517.7 424 60.4
Hund03878 Selenicereus undatus HOM05D006431 ORTHO05D007918 4.0e-144 515.4 420 60.5
Dinv31736 Davidia involucrata HOM05D006431 ORTHO05D007918 4.9e-142 508.4 416 61.5
FAN09G4399 Fragaria x ananassa HOM05D006431 ORTHO05D007918 1.2e-140 503.8 433 58.9
FAN14G3124 Fragaria x ananassa HOM05D006431 ORTHO05D007918 1.3e-139 500.4 383 63.2
Nn2g14247 Nelumbo nucifera HOM05D006431 ORTHO05D007918 5.6e-138 495.0 422 58.3
Duzib093G0136 Durio zibethinus HOM05D006431 ORTHO05D007918 1.8e-136 490.0 424 59.4
Aa31sc52G40 Aethionema arabicum HOM05D006431 ORTHO05D007918 4.0e-136 488.8 498 51.2
Os12g0157200 Oryza sativa ssp. japonica HOM05D006431 ORTHO05D007918 1.7e-134 483.4 426 54.9
HPP92_023016 Vanilla planifolia HOM05D006431 ORTHO05D007918 1.7e-134 483.4 423 55.8
Sabra06G0159100 Salix brachista HOM05D006431 ORTHO05D007918 6.4e-134 481.5 565 47.4
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 4.1e-133 478.8 405 58.3
A10p30220 Brassica napus HOM05D006431 ORTHO05D007918 1.1e-130 470.7 369 62.6
Zm00001eb407020 Zea mays HOM05D006431 ORTHO05D007918 4.7e-129 465.3 426 55.6
COL.COLO4_29622 Corchorus olitorius HOM05D006431 ORTHO05D007918 6.2e-129 464.9 359 64.1
Cpa.g.sc104.72 Carica papaya HOM05D006431 ORTHO05D007918 1.6e-121 440.3 464 50.2
Pp3c10_6920 Physcomitrium patens HOM05D006431 ORTHO05D007918 4.0e-120 435.6 424 50.2
Oeu017704.1 Olea europaea HOM05D006431 ORTHO05D007918 4.5e-119 432.2 459 49.9
Sc02g0000490 Simmondsia chinensis HOM05D006431 ORTHO05D007918 7.6e-119 431.4 339 63.1
SMO358G0080 Selaginella moellendorffii HOM05D006431 ORTHO05D007918 1.8e-115 420.2 424 48.3
Lj1A1036G18 Lonicera japonica HOM05D006431 ORTHO05D007918 6.2e-113 411.8 299 65.2
Mapoly0002s0288 Marchantia polymorpha HOM05D006431 ORTHO05D007918 7.6e-111 404.8 429 47.1
PSO339G1068 Papaver somniferum HOM05D006431 ORTHO05D007918 3.3e-106 389.4 322 59.0
CDE12G0869 Ceratophyllum demersum HOM05D006431 ORTHO05D007918 1.9e-98 363.6 421 46.8
MBI17_g39691_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 1.5e-95 354.0 225 72.0
MBI17_g45031_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 1.5e-95 354.0 225 72.0
Nitab4.5_0006555g0060 Nicotiana tabacum HOM05D006431 ORTHO05D007918 3.7e-89 332.8 307 55.7
MBI18_g45360_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 1.2e-87 327.8 230 67.0
AagrBONN_evm.TU.Sc2ySwM_368.1429 Anthoceros agrestis HOM05D006431 ORTHO05D007918 6.3e-73 278.9 355 41.7
Thhalv10029204m.g Eutrema salsugineum HOM05D006431 ORTHO05D007918 1.6e-68 264.2 281 49.5
AT4G34070 Arabidopsis thaliana HOM05D006431 ORTHO05D007918 6.1e-68 262.3 256 52.7
MBI17_g27947_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 4.9e-49 199.5 129 70.5
MBI17_g46230_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 4.9e-49 199.5 129 70.5
Nitab4.5_0006555g0050 Nicotiana tabacum HOM05D006431 ORTHO05D007918 9.8e-42 175.3 116 75.0
SEGI_02239 Sequoiadendron giganteum HOM05D006431 ORTHO05D007918 2.8e-36 157.1 103 64.1
TAR623G0798 Trochodendron aralioides HOM05D006431 ORTHO05D007918 1.2e-34 151.8 98 73.5
Cre10.g436950 Chlamydomonas reinhardtii HOM05D006431 ORTHO05D007918 4.1e-32 143.3 173 39.3
SEGI_13589 Sequoiadendron giganteum HOM05D006431 ORTHO05D007918 2.1e-31 141.0 120 55.0
HPP92_023056 Vanilla planifolia HOM05D006431 ORTHO05D007918 2.3e-27 127.5 97 58.8
Hma1.2p1_0064F.1_g034930 Hydrangea macrophylla HOM05D006431 ORTHO05D007918 8.3e-25 119.0 87 69.0
Hma1.2p1_1131F.1_g260030 Hydrangea macrophylla HOM05D006431 ORTHO05D007918 8.3e-25 119.0 87 69.0
AT2G45380 Arabidopsis thaliana HOM05D002260 ORTHO05D000476 1.2e-20 105.1 86 61.6
HPP92_023055 Vanilla planifolia HOM05D006431 ORTHO05D007918 4.4e-18 96.7 81 53.1
CsaV3_1G024120 Cucumis sativus L. HOM05D006431 ORTHO05D007918 1.3e-17 95.1 96 50.0
CBR_g49969 Chara braunii HOM05D002111 ORTHO05D002160 1.9e-13 81.3 148 33.1
Pp3c23_20180 Physcomitrium patens HOM05D002111 ORTHO05D002160 4.3e-13 80.1 194 30.4
Mapoly0102s0056 Marchantia polymorpha HOM05D002111 ORTHO05D002160 7.3e-13 79.3 150 30.7
MCO11G192 Micromonas commoda HOM05D006431 ORTHO05D007918 6.2e-12 76.3 212 23.6
Hma1.2p1_0047F.1_g027840 Hydrangea macrophylla HOM05D002111 ORTHO05D002160 1.1e-11 75.5 150 30.0
DCAR_010085 Daucus carota HOM05D002111 ORTHO05D002160 9.0e-11 72.4 196 26.5
Prupe.6G186700 Prunus persica HOM05D002111 ORTHO05D002160 9.0e-11 72.4 150 29.3
Atru.chr4.66 Acer truncatum HOM05D002111 ORTHO05D002160 1.5e-10 71.6 150 30.0
Gohir.A12G087800 Gossypium hirsutum HOM05D002111 ORTHO05D002160 2.0e-10 71.2 164 30.5
Gohir.D12G085900 Gossypium hirsutum HOM05D002111 ORTHO05D002160 2.0e-10 71.2 164 30.5
Gorai.008G096200 Gossypium raimondii HOM05D002111 ORTHO05D002160 2.0e-10 71.2 164 30.5
Pp3c8_17090 Physcomitrium patens HOM05D002111 ORTHO05D002160 2.0e-10 71.2 148 31.8
Actinidia32065 Actinidia chinensis HOM05D006431 ORTHO05D007918 2.6e-10 70.9 71 47.9
Thecc.01G101700 Theobroma cacao HOM05D002111 ORTHO05D002160 4.4e-10 70.1 150 30.7
COL.COLO4_09962 Corchorus olitorius HOM05D002111 ORTHO05D002160 9.9e-10 68.9 164 31.1
Ciclev10025897m.g Citrus clementina HOM05D002111 ORTHO05D002160 1.3e-09 68.6 150 28.7
Pp3c24_19410 Physcomitrium patens HOM05D002111 ORTHO05D002160 1.3e-09 68.6 148 31.1
CANSAT78G1669 Cannabis sativa HOM05D002111 ORTHO05D002160 1.7e-09 68.2 149 28.9
Mapoly0104s0023 Marchantia polymorpha HOM05D002111 ORTHO05D002160 2.2e-09 67.8 149 28.9
PGR102G2983 Punica granatum HOM05D002111 ORTHO05D002160 2.9e-09 67.4 150 28.7
Potri.007G092700 Populus trichocarpa HOM05D002111 ORTHO05D002160 4.9e-09 66.6 150 28.7
Peaxi162Scf00153g01715 Petunia axillaris HOM05D002111 ORTHO05D002160 6.4e-09 66.2 149 30.2
SGA_v2.0_scaffold111G31519 Striga asiatica HOM05D002111 ORTHO05D002160 8.4e-09 65.9 151 30.5
Thhalv10024527m.g Eutrema salsugineum HOM05D001923 ORTHO05D001903 4.2e-08 63.5 165 27.9
A03p65850 Brassica napus HOM05D002111 ORTHO05D002160 5.4e-08 63.2 199 27.6
BraA03t15637Z Brassica rapa HOM05D002111 ORTHO05D002160 5.4e-08 63.2 199 27.6
BcaNung02303 Brassica carinata HOM05D002111 ORTHO05D002160 7.1e-08 62.8 202 27.2
CARHR246830 Cardamine hirsuta HOM05D002111 ORTHO05D002160 9.3e-08 62.4 165 27.3
Sp7g36020 Schrenkiella parvula HOM05D002111 ORTHO05D002160 2.1e-07 61.2 164 27.4
Aa31LG6G15400 Aethionema arabicum HOM05D002111 ORTHO05D002160 6.0e-07 59.7 150 28.0
AL7G12110 Arabidopsis lyrata HOM05D002111 ORTHO05D002160 1.0e-06 58.9 150 28.0
BcaNung03403 Brassica carinata HOM05D002111 ORTHO05D002160 1.0e-06 58.9 164 26.8
BolC7t46696H Brassica oleracea HOM05D002111 ORTHO05D002160 1.0e-06 58.9 164 26.8
Carub.0007s0180 Capsella rubella HOM05D002111 ORTHO05D002160 1.0e-06 58.9 150 28.0
AT4G39870 Arabidopsis thaliana HOM05D002111 ORTHO05D002160 1.3e-06 58.5 150 28.0


User provided reference genes

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