Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 1.1e-101 373.2 179 100.0
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 4.5e-39 165.2 165 57.0
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 5.5e-37 158.3 170 54.1
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 1.1e-34 150.6 174 52.9
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 9.7e-34 147.5 168 49.4
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 6.3e-33 144.8 175 48.6
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 8.2e-33 144.4 175 50.3
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 1.4e-32 143.7 173 50.3
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 1.8e-32 143.3 158 53.2
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 9.1e-32 141.0 174 49.4
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 1.2e-31 140.6 157 51.6
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 3.5e-31 139.0 182 44.5
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 4.5e-31 138.7 155 52.9
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 1.3e-30 137.1 179 45.8
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 4.2e-29 132.1 169 47.3
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 4.2e-29 132.1 169 47.3
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 5.5e-29 131.7 171 44.4
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 1.2e-28 130.6 183 44.8
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 1.2e-28 130.6 169 47.3
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 3.6e-28 129.0 160 44.4
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 4.7e-28 128.6 170 44.7
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 1.0e-27 127.5 173 46.2
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 3.0e-27 125.9 183 41.5
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 3.0e-27 125.9 164 48.8
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 5.2e-27 125.2 163 47.9
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 6.7e-27 124.8 174 46.0
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 8.8e-27 124.4 173 45.1
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 8.8e-27 124.4 151 47.0
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 3.3e-26 122.5 148 48.0
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 4.4e-26 122.1 179 40.8
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 5.7e-26 121.7 156 46.8
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.7e-25 120.2 156 46.2
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 1.7e-25 120.2 175 42.9
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 2.8e-25 119.4 198 41.4
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 2.8e-25 119.4 125 50.4
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 6.3e-25 118.2 173 44.5
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 1.8e-24 116.7 173 41.6
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 3.1e-24 115.9 154 44.2
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 5.3e-24 115.2 159 44.7
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 7.0e-24 114.8 181 39.2
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 9.1e-24 114.4 175 42.9
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 1.6e-23 113.6 159 47.2
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 2.0e-23 113.2 164 40.2
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 2.6e-23 112.8 176 38.6
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 2.6e-23 112.8 175 41.1
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 4.5e-23 112.1 174 42.0
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 7.7e-23 111.3 187 39.0
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 7.7e-23 111.3 166 39.8
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 1.0e-22 110.9 165 41.2
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 1.7e-22 110.2 177 41.2
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 1.7e-22 110.2 159 45.9
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 2.2e-22 109.8 152 44.7
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 2.2e-22 109.8 164 40.2
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 2.2e-22 109.8 193 40.9
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 2.9e-22 109.4 152 44.7
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 6.5e-22 108.2 174 40.8
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 1.1e-21 107.5 148 44.6
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 1.9e-21 106.7 137 48.9
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 2.5e-21 106.3 117 50.4
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 4.2e-21 105.5 166 38.6
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 1.2e-20 104.0 137 47.4
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 3.6e-20 102.4 166 39.2
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 6.1e-20 101.7 169 39.1
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 2.3e-19 99.8 184 35.9
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 8.8e-19 97.8 139 42.4
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 3.4e-18 95.9 177 41.2
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 4.4e-18 95.5 147 40.8
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 7.5e-18 94.7 190 36.8
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 1.3e-17 94.0 151 43.7
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 6.3e-17 91.7 166 36.1
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 1.1e-16 90.9 176 36.9
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 1.2e-15 87.4 153 38.6
Lj1C1068T20 Lonicera japonica HOM05D007902 ORTHO05D009839 1.0e-14 84.3 85 50.6
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 6.5e-14 81.6 146 39.7
Lj1A965T42 Lonicera japonica HOM05D007902 ORTHO05D009839 2.5e-13 79.7 84 47.6
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 3.2e-13 79.3 124 39.5
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 7.2e-13 78.2 158 36.7
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 4.7e-12 75.5 89 42.7
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 1.4e-11 73.9 85 51.8
SEGI_07762 Sequoiadendron giganteum HOM05D052445 ORTHO05D000541 2.3e-11 73.2 202 29.7
ECA232G2170 Erigeron canadensis HOM05D001122 ORTHO05D001877 5.2e-11 72.0 101 43.6
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 8.8e-11 71.2 183 31.1
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 3.4e-10 69.3 191 27.7
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 4.4e-10 68.9 194 27.3
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 5.7e-10 68.6 180 30.0
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 7.5e-10 68.2 123 32.5
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 1.3e-09 67.4 177 29.4
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 1.7e-09 67.0 161 29.8
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 3.7e-09 65.9 184 27.7
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 3.7e-09 65.9 131 34.4
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 6.3e-09 65.1 180 27.8
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 6.3e-09 65.1 183 30.6
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 6.3e-09 65.1 161 29.8
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 6.3e-09 65.1 186 26.9
AUR62012352 Chenopodium quinoa HOM05D038520 ORTHO05D009839 8.3e-09 64.7 176 32.4
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 8.3e-09 64.7 164 29.9
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 8.3e-09 64.7 159 28.3
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 1.1e-08 64.3 183 28.4
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 1.1e-08 64.3 185 27.0
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 1.4e-08 63.9 155 32.3
CSS0018830 Camellia sinensis var. sinensis HOM05D000727 ORTHO05D000541 1.8e-08 63.5 185 27.6
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 1.8e-08 63.5 180 27.8
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 1.8e-08 63.5 159 27.7
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 1.8e-08 63.5 161 29.2
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 1.8e-08 63.5 196 27.6
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 1.8e-08 63.5 191 30.4
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 2.4e-08 63.2 185 29.2
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 3.1e-08 62.8 182 29.7
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 4.1e-08 62.4 161 29.2
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 4.1e-08 62.4 86 44.2
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 9.1e-08 61.2 179 27.9
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 9.1e-08 61.2 177 29.9
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 1.2e-07 60.8 174 29.3
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 1.2e-07 60.8 191 28.3
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 2.0e-07 60.1 160 26.9
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 2.0e-07 60.1 170 27.6
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 2.7e-07 59.7 170 28.2
Migut.E00666 Erythranthe guttata HOM05D000727 ORTHO05D000541 2.7e-07 59.7 193 29.0
SEGI_37508 Sequoiadendron giganteum HOM05D000727 ORTHO05D000541 2.7e-07 59.7 184 25.5
MBI03_g40382_MAGBIO Magnolia biondii HOM05D034203 ORTHO05D009839 3.5e-07 59.3 72 44.4
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 4.5e-07 58.9 176 27.3
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 4.5e-07 58.9 172 26.2
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 4.5e-07 58.9 181 27.6
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 4.5e-07 58.9 163 27.6
MSTRG.2077 Avicennia marina HOM05D000727 ORTHO05D000541 7.7e-07 58.2 171 29.2
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 7.7e-07 58.2 164 26.2
Peaxi162Scf00329g00121 Petunia axillaris HOM05D000727 ORTHO05D000541 1.0e-06 57.8 133 31.6
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 1.0e-06 57.8 194 27.3
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 1.7e-06 57.0 187 26.2
BcaC04g23495 Brassica carinata HOM05D000727 ORTHO05D000541 1.7e-06 57.0 185 24.9
C09p07710 Brassica napus HOM05D000727 ORTHO05D000541 1.7e-06 57.0 185 24.9
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.7e-06 57.0 49 61.2
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 1.7e-06 57.0 165 26.1
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 1.7e-06 57.0 165 26.1
VMungo0720G2558 Vigna mungo HOM05D000727 ORTHO05D000541 1.7e-06 57.0 198 25.3
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 2.3e-06 56.6 186 25.8
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 2.3e-06 56.6 180 27.2
BolC2t12139H Brassica oleracea HOM05D000727 ORTHO05D000541 2.9e-06 56.2 182 25.8
Glyma.20G100600 Glycine max HOM05D000727 ORTHO05D000541 2.9e-06 56.2 169 27.2
BolC9t53688H Brassica oleracea HOM05D000727 ORTHO05D000541 3.8e-06 55.8 184 25.5
Dinv17654 Davidia involucrata HOM05D000727 ORTHO05D000541 3.8e-06 55.8 177 26.0
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 3.8e-06 55.8 178 25.3
Lj5g0017221 Lotus japonicus HOM05D000727 ORTHO05D000541 5.0e-06 55.5 188 26.6
QL01p000468 Quercus lobata HOM05D000727 ORTHO05D000541 5.0e-06 55.5 188 26.1
QL01p000554 Quercus lobata HOM05D000727 ORTHO05D000541 5.0e-06 55.5 188 26.1
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 6.6e-06 55.1 197 25.4
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 6.6e-06 55.1 174 25.9
Haze_17405 Corylus avellana HOM05D000727 ORTHO05D000541 6.6e-06 55.1 180 26.7
AL6G34700 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 8.6e-06 54.7 178 29.2
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 8.6e-06 54.7 178 29.2
arahy.Tifrunner.gnm1.ann1.BLWT23 Arachis hypogaea HOM05D000727 ORTHO05D000541 8.6e-06 54.7 165 27.3
BraA02t09046Z Brassica rapa HOM05D000727 ORTHO05D000541 8.6e-06 54.7 199 26.6


User provided reference genes

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