Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 3.2e-252 874.8 499 100.0
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 4.1e-175 618.6 473 75.5
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 6.3e-99 365.5 475 54.9
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 8.8e-93 345.1 488 54.9
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.1e-69 268.5 485 43.9
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 3.4e-68 263.5 454 43.6
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.3e-64 251.5 498 44.4
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 5.1e-64 249.6 455 42.9
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 5.1e-64 249.6 454 40.3
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.5e-63 248.1 471 41.2
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 2.5e-63 247.3 426 45.5
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.7e-62 243.0 501 41.9
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 4.0e-61 240.0 486 39.7
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.6e-60 237.3 488 41.8
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 6.4e-59 232.6 484 39.9
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 7.1e-58 229.2 489 44.6
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 2.7e-57 227.3 456 39.5
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.7e-57 227.3 494 39.3
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 3.0e-56 223.8 457 40.0
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 5.1e-56 223.0 472 40.7
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 6.6e-56 222.6 519 39.5
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.6e-55 219.5 495 38.6
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 5.6e-55 219.5 484 40.3
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 9.6e-55 218.8 445 40.2
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.6e-54 218.0 465 38.7
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.6e-54 218.0 458 38.9
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 4.7e-54 216.5 490 38.2
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 8.1e-54 215.7 498 37.8
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 8.1e-54 215.7 517 37.7
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.2e-51 207.6 452 40.0
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 4.2e-50 203.4 416 39.7
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 3.0e-48 197.2 461 37.7
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 3.9e-48 196.8 492 37.4
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 3.9e-48 196.8 492 37.4
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 3.9e-48 196.8 508 35.8
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.5e-47 194.9 541 35.9
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 2.5e-47 194.1 469 39.7
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 5.6e-47 193.0 463 35.9
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 7.3e-47 192.6 455 40.2
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 8.1e-46 189.1 436 35.1
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 5.3e-45 186.4 486 35.6
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 6.9e-45 186.0 486 37.4
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.2e-44 185.3 482 39.8
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 1.3e-43 181.8 466 37.3
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 3.2e-42 177.2 451 35.5
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.2e-42 177.2 450 37.3
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 5.4e-42 176.4 454 38.5
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 5.4e-42 176.4 454 38.5
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 3.5e-41 173.7 411 34.5
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.6e-41 173.3 430 36.7
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 3.0e-40 170.6 459 39.0
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.1e-39 168.7 536 32.6
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.5e-39 168.3 419 34.4
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 3.3e-39 167.2 497 34.4
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 5.6e-39 166.4 483 34.6
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 7.4e-39 166.0 473 37.2
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 1.6e-38 164.9 406 38.2
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.1e-38 164.5 374 41.7
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 3.6e-38 163.7 465 34.6
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 4.8e-38 163.3 557 32.5
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.4e-37 161.0 566 31.3
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.1e-37 160.6 458 35.6
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 4.0e-37 160.2 530 34.2
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 9.0e-37 159.1 567 32.3
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 9.0e-37 159.1 423 34.5
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.7e-35 154.8 480 35.4
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.9e-35 154.1 323 40.9
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 6.4e-35 152.9 584 33.0
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 8.4e-35 152.5 489 30.9
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.9e-34 151.4 396 36.4
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 3.2e-34 150.6 422 37.4
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 7.1e-34 149.4 414 37.0
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 7.1e-34 149.4 431 37.1
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 2.1e-33 147.9 406 37.4
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 2.1e-33 147.9 406 37.4
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.1e-33 147.9 603 32.2
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 4.6e-33 146.7 532 33.5
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.0e-32 145.6 554 35.0
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 2.3e-32 144.4 537 31.5
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 5.1e-32 143.3 411 34.3
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 6.7e-32 142.9 407 33.7
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.1e-31 142.1 515 34.0
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 3.3e-31 140.6 488 29.9
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 5.6e-31 139.8 431 34.1
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 7.4e-31 139.4 553 35.3
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.3e-30 138.7 562 31.9
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 1.3e-30 138.7 480 33.3
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.3e-30 138.7 425 33.6
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 6.2e-30 136.3 442 31.4
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.4e-29 135.2 508 32.9
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 4.0e-29 133.7 513 31.8
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 9.0e-29 132.5 469 32.0
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 9.0e-29 132.5 513 28.8
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 9.0e-29 132.5 513 28.8
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.2e-28 132.1 483 30.4
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 2.0e-28 131.3 460 33.9
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.6e-28 131.0 520 31.7
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 2.9e-27 127.5 480 35.0
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 3.8e-27 127.1 614 28.5
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 4.9e-27 126.7 302 37.4
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.1e-26 125.6 434 36.6
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.4e-26 125.2 382 36.6
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 3.2e-26 124.0 451 30.4
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 4.2e-26 123.6 480 30.0
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 4.2e-26 123.6 475 34.3
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 5.5e-26 123.2 519 36.0
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 5.5e-26 123.2 553 33.5
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 5.5e-26 123.2 577 32.1
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 7.1e-26 122.9 556 28.6
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 9.3e-26 122.5 551 31.2
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 3.5e-25 120.6 578 28.9
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 3.5e-25 120.6 237 41.8
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.6e-25 120.2 397 36.3
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 2.3e-24 117.9 420 31.7
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 3.0e-24 117.5 463 33.7
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 6.7e-24 116.3 497 31.6
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 6.7e-24 116.3 520 29.2
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.5e-23 114.4 482 34.0
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 9.6e-23 112.5 525 31.6
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 1.3e-22 112.1 491 28.9
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 3.1e-21 107.5 455 29.9
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 5.3e-21 106.7 414 31.9
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.0e-20 104.8 552 30.1
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 2.6e-20 104.4 428 29.4
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 3.4e-20 104.0 516 32.8
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 1.1e-18 99.0 228 36.0
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.2e-17 95.5 496 29.0
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.2e-17 95.5 473 30.4
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.6e-17 95.1 504 31.0
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 4.6e-17 93.6 527 29.6
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 7.9e-17 92.8 432 29.4
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.0e-16 92.4 557 28.0
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 1.0e-16 92.4 85 63.5
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.9e-15 88.2 246 36.6
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.9e-15 88.2 345 29.9
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.5e-15 87.8 423 30.7
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 2.5e-15 87.8 509 26.5
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 4.8e-14 83.6 129 41.9
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 4.1e-13 80.5 537 28.7
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 1.2e-12 79.0 452 27.2
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 2.0e-12 78.2 551 27.9
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.6e-12 77.8 200 36.5
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 3.4e-12 77.4 441 29.7
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 4.5e-12 77.0 438 30.8
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 5.9e-12 76.6 521 27.6
SalBow4G2270 Salvia bowleyana HOM05D001745 ORTHO05D001772 1.4e-10 72.0 41 82.9
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 2.5e-10 71.2 110 47.3
SalBow8G1632 Salvia bowleyana HOM05D002096 ORTHO05D002203 2.5e-10 71.2 45 80.0
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.2e-10 70.9 119 42.9
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 4.2e-10 70.5 451 29.5
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 9.4e-10 69.3 135 40.7
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 2.7e-09 67.8 442 28.5
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.6e-09 67.4 404 26.7
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 1.0e-08 65.9 196 35.7
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.8e-08 65.1 140 37.1
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 3.9e-08 63.9 144 36.1
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 5.1e-08 63.5 431 27.4
SalBow3G2095 Salvia bowleyana HOM05D001037 ORTHO05D000888 5.1e-08 63.5 41 75.6
SalBow5G5091 Salvia bowleyana HOM05D009427 ORTHO05D009453 8.8e-08 62.8 41 73.2
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 2.0e-07 61.6 76 48.7
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.0e-07 61.6 529 25.5
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 2.6e-07 61.2 454 28.0
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 3.3e-07 60.8 135 38.5
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 9.7e-07 59.3 425 27.3
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.7e-06 58.5 521 25.5
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.2e-06 58.2 122 38.5
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.8e-06 57.8 430 28.1
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 3.7e-06 57.4 572 25.5
BolC3t21046H Brassica oleracea HOM05D009573 ORTHO05D004035 8.2e-06 56.2 111 41.4


User provided reference genes

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