Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 3.5e-36 154.5 79 100.0
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 3.9e-27 124.4 77 77.9
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 1.6e-20 102.4 77 61.0
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 2.1e-20 102.1 77 63.6
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 2.7e-20 101.7 83 63.9
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 7.8e-20 100.1 77 62.3
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 3.0e-19 98.2 77 57.1
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.0e-19 98.2 77 57.1
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.0e-19 98.2 77 57.1
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.0e-19 98.2 77 57.1
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 5.1e-19 97.4 77 61.0
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 5.1e-19 97.4 62 71.0
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 8.7e-19 96.7 77 58.4
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 1.1e-18 96.3 77 59.7
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 1.5e-18 95.9 78 64.1
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 1.9e-18 95.5 65 70.8
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 1.9e-18 95.5 77 57.1
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 2.5e-18 95.1 76 64.5
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 3.3e-18 94.7 56 75.0
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 3.3e-18 94.7 77 58.4
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 4.3e-18 94.4 77 58.4
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 4.3e-18 94.4 68 67.6
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.3e-18 94.4 77 55.8
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 5.6e-18 94.0 78 61.5
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 5.6e-18 94.0 70 64.3
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 5.6e-18 94.0 81 60.5
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 7.3e-18 93.6 59 71.2
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 7.3e-18 93.6 66 65.2
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 2.1e-17 92.0 72 58.3
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 2.1e-17 92.0 77 58.4
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 2.8e-17 91.7 68 61.8
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 2.8e-17 91.7 59 71.2
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 3.6e-17 91.3 67 65.7
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 3.6e-17 91.3 79 54.4
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 6.2e-17 90.5 64 67.2
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 6.2e-17 90.5 76 57.9
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 1.1e-16 89.7 61 67.2
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 1.1e-16 89.7 77 55.8
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 1.8e-16 89.0 68 61.8
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 1.8e-16 89.0 77 57.1
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 1.8e-16 89.0 59 66.1
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 2.4e-16 88.6 68 61.8
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 3.1e-16 88.2 77 55.8
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 3.1e-16 88.2 77 54.5
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 4.0e-16 87.8 72 56.9
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 4.0e-16 87.8 65 63.1
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 5.3e-16 87.4 68 58.8
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 5.3e-16 87.4 65 61.5
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 6.9e-16 87.0 56 67.9
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 6.9e-16 87.0 66 60.6
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 9.0e-16 86.7 58 67.2
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 9.0e-16 86.7 65 61.5
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 9.0e-16 86.7 66 59.1
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 9.0e-16 86.7 66 62.1
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 1.5e-15 85.9 65 61.5
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 2.0e-15 85.5 60 65.0
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 2.0e-15 85.5 75 56.0
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 2.6e-15 85.1 68 58.8
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 4.5e-15 84.3 75 54.7
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 4.5e-15 84.3 60 65.0
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 9.9e-15 83.2 55 67.3
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 9.9e-15 83.2 55 67.3
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 9.9e-15 83.2 55 67.3
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 9.9e-15 83.2 55 67.3
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 9.9e-15 83.2 55 67.3
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 9.9e-15 83.2 71 56.3
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 9.9e-15 83.2 68 55.9
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 1.7e-14 82.4 60 63.3
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 2.2e-14 82.0 77 50.6
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 2.9e-14 81.6 59 62.7
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 3.8e-14 81.3 60 63.3
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 4.9e-14 80.9 66 54.5
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 8.4e-14 80.1 113 38.9
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 1.4e-13 79.3 60 60.0
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.4e-13 79.3 70 58.6
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 4.2e-13 77.8 107 41.1
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 4.2e-13 77.8 68 54.4
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 5.4e-13 77.4 68 50.0
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 7.1e-13 77.0 59 55.9
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 1.2e-12 76.3 80 51.2
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 2.7e-12 75.1 68 51.5
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 3.5e-12 74.7 69 55.1
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 6.0e-12 73.9 69 52.2
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 1.3e-11 72.8 69 52.2
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.3e-11 72.8 61 59.0
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 1.3e-11 72.8 79 48.1
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 1.8e-11 72.4 59 54.2
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 3.9e-11 71.2 43 76.7
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 5.1e-11 70.9 42 76.2
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 9.6e-10 66.6 39 76.9
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 2.1e-09 65.5 57 56.1
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 4.8e-09 64.3 77 40.3
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 1.1e-08 63.2 38 73.7
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.1e-08 61.6 40 70.0


User provided reference genes

Program Settings