Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 0.0e+00 1154.4 586 100.0
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 1.2e-226 790.0 597 70.0
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 2.2e-220 769.2 598 68.9
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 1.6e-197 693.3 591 63.1
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 1.2e-192 677.2 597 62.1
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 4.5e-189 665.2 587 61.8
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 3.2e-187 659.1 629 58.8
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 5.5e-187 658.3 585 60.9
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 3.0e-185 652.5 592 61.5
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 2.6e-184 649.4 592 60.3
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 4.4e-184 648.7 600 60.2
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 2.2e-183 646.4 548 63.0
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 2.2e-183 646.4 585 61.0
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 3.1e-182 642.5 585 60.5
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 5.4e-182 641.7 603 60.0
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 5.4e-182 641.7 592 60.0
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 2.0e-181 639.8 593 59.9
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 3.5e-181 639.0 587 59.8
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 3.8e-180 635.6 584 61.1
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 8.6e-180 634.4 596 59.9
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.5e-179 632.9 588 58.7
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 5.6e-179 631.7 588 58.7
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 2.1e-178 629.8 586 60.2
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.7e-178 628.6 588 58.3
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 6.1e-178 628.2 583 59.0
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 1.8e-177 626.7 587 58.9
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 2.0e-176 623.2 585 59.3
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 3.4e-176 622.5 582 57.0
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 9.8e-176 620.9 585 58.3
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 3.7e-175 619.0 595 56.6
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 4.9e-175 618.6 592 58.4
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 2.4e-174 616.3 585 57.9
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 5.9e-173 611.7 584 57.0
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 1.9e-171 606.7 582 58.1
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 1.0e-169 600.9 594 57.2
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 4.0e-169 599.0 590 57.5
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 6.8e-169 598.2 594 57.2
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 6.8e-169 598.2 585 55.6
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 8.9e-169 597.8 585 56.2
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 1.5e-168 597.0 588 55.8
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 7.5e-168 594.7 575 57.4
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 7.5e-168 594.7 582 55.8
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 1.7e-167 593.6 584 56.3
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 1.4e-166 590.5 596 55.5
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 1.9e-166 590.1 597 55.1
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 1.6e-165 587.0 598 55.5
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 2.7e-165 586.3 570 57.2
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 4.6e-165 585.5 549 57.7
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 8.6e-164 581.3 540 57.6
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 1.9e-163 580.1 549 58.3
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 4.3e-163 578.9 583 55.2
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 7.3e-163 578.2 628 51.3
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 3.6e-162 575.9 594 54.0
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 2.3e-161 573.2 517 62.5
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 8.9e-161 571.2 455 65.9
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 3.4e-160 569.3 585 53.3
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 3.7e-159 565.8 583 53.0
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 3.2e-158 562.8 592 55.6
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 7.1e-158 561.6 593 54.1
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 9.2e-158 561.2 586 54.6
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 7.3e-155 551.6 552 55.4
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 2.8e-154 549.7 456 63.8
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 6.2e-154 548.5 588 53.6
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 6.2e-154 548.5 588 53.6
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 6.2e-154 548.5 510 57.6
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.2e-146 524.2 544 53.7
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 3.6e-146 522.7 585 51.5
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.7e-146 522.3 570 52.1
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 2.4e-145 520.0 594 48.5
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 3.4e-144 516.2 526 54.6
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 3.2e-142 509.6 594 48.1
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 5.4e-142 508.8 587 50.4
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 2.7e-141 506.5 579 49.6
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 1.7e-140 503.8 586 49.5
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 3.9e-140 502.7 604 48.2
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 1.1e-139 501.1 586 49.5
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 1.1e-139 501.1 586 49.5
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.3e-138 497.7 589 49.4
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 1.4e-137 494.2 582 49.1
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 1.4e-137 494.2 582 49.1
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 1.4e-137 494.2 579 49.4
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 3.1e-137 493.0 584 48.8
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 1.1e-134 484.6 581 47.8
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 5.4e-134 482.3 438 61.2
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 2.1e-133 480.3 593 46.9
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 4.6e-133 479.2 599 47.4
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 6.0e-133 478.8 594 49.0
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 3.0e-132 476.5 429 59.7
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 3.3e-131 473.0 602 48.2
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 2.4e-129 466.8 477 54.9
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 9.0e-129 464.9 359 68.8
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.7e-127 460.7 585 45.6
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 1.2e-125 454.5 506 52.2
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 8.2e-122 441.8 405 59.3
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 2.2e-119 433.7 585 44.3
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.1e-118 431.4 430 55.8
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 5.5e-118 429.1 491 50.5
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 6.3e-114 415.6 582 43.3
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.8e-113 414.1 475 48.8
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 8.5e-111 405.2 585 42.9
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 1.2e-109 401.4 527 43.6
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 1.2e-109 401.4 547 44.1
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 1.6e-109 401.0 604 41.9
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 5.7e-107 392.5 547 42.2
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 4.5e-104 382.9 578 42.0
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 2.9e-103 380.2 430 48.1
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 7.9e-101 372.1 547 41.1
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 3.0e-100 370.2 418 50.7
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 3.9e-100 369.8 418 50.5
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 1.3e-98 364.8 532 38.9
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.1e-97 361.7 512 43.8
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 5.3e-89 332.8 408 48.5
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 1.0e-87 328.6 462 45.5
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 1.5e-86 324.7 602 35.4
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 1.6e-85 321.2 397 49.6
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 2.7e-85 320.5 224 72.8
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.8e-84 317.8 546 37.2
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.4e-81 307.4 264 63.3
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 1.0e-79 302.0 440 45.0
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.0e-76 292.0 284 53.2
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 5.2e-76 289.7 355 48.2
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.5e-75 288.1 282 52.1
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.9e-70 271.2 378 43.9
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 4.7e-61 240.0 373 40.2
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 5.8e-51 206.5 340 39.1
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 3.2e-49 200.7 149 68.5
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 1.6e-40 171.8 197 48.7
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 4.9e-34 150.2 179 50.3
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 3.5e-32 144.1 335 30.7
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 4.7e-29 133.7 97 67.0
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 3.3e-22 110.9 71 76.1
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 7.3e-22 109.8 247 30.0
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 6.2e-21 106.7 321 28.0
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.2e-19 102.4 69 71.0
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 3.8e-18 97.4 68 67.6
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 6.4e-18 96.7 106 49.1
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 6.4e-18 96.7 67 71.6
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 3.2e-17 94.4 96 55.2
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 2.3e-15 88.2 49 81.6
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 4.3e-14 84.0 82 58.5
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 1.2e-11 75.9 71 59.2
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 5.5e-09 67.0 123 33.3
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 1.2e-08 65.9 125 33.6
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 3.5e-08 64.3 141 31.2
QL02p017308 Quercus lobata HOM05D005024 ORTHO05D006396 6.0e-08 63.5 119 38.7
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 7.9e-08 63.2 173 30.6
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 7.9e-08 63.2 173 30.6
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 1.8e-07 62.0 148 31.8
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 1.8e-07 62.0 156 30.1
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 2.3e-07 61.6 208 26.9
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 2.3e-07 61.6 164 29.3
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 3.0e-07 61.2 216 25.9
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 6.7e-07 60.1 125 32.8
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 6.7e-07 60.1 151 29.1
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 8.7e-07 59.7 125 32.8
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 1.5e-06 58.9 143 29.4
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 3.3e-06 57.8 123 31.7
Gohir.A01G114950 Gossypium hirsutum HOM05D005024 ORTHO05D029835 9.6e-06 56.2 90 37.8
Gohir.A01G201250 Gossypium hirsutum HOM05D005024 ORTHO05D029835 9.6e-06 56.2 90 37.8
Gorai.003G122400 Gossypium raimondii HOM05D005024 ORTHO05D029835 9.6e-06 56.2 90 37.8
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 9.6e-06 56.2 240 27.1


User provided reference genes

Program Settings