Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 0.0e+00 1142.5 594 100.0
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 5.2e-116 422.5 614 47.6
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 2.6e-107 393.7 622 46.0
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.7e-87 327.8 581 42.2
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 7.6e-83 312.4 632 39.4
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 5.6e-70 269.6 622 37.3
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 1.2e-51 208.8 807 29.0
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 8.7e-47 192.6 647 32.0
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 4.3e-46 190.3 645 31.2
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 3.1e-44 184.1 626 31.5
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 1.5e-43 181.8 640 31.7
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 3.8e-42 177.2 401 34.7
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 5.3e-36 156.8 637 28.9
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 3.4e-35 154.1 616 29.2
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 1.7e-34 151.8 217 45.6
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 1.9e-33 148.3 563 30.7
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 1.6e-32 145.2 361 34.9
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 2.1e-32 144.8 765 27.6
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 7.9e-32 142.9 662 28.7
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 1.8e-31 141.7 460 30.9
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 3.0e-31 141.0 670 29.7
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 5.1e-31 140.2 616 28.7
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 6.7e-31 139.8 659 29.4
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 8.8e-31 139.4 650 28.9
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 8.8e-31 139.4 655 29.5
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 2.0e-30 138.3 442 32.1
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 9.7e-30 136.0 473 30.0
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 2.8e-29 134.4 363 32.8
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 2.8e-29 134.4 653 28.9
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 4.8e-29 133.7 357 32.8
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 6.3e-29 133.3 360 32.8
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 6.3e-29 133.3 480 30.0
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 1.8e-28 131.7 653 28.3
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 4.1e-28 130.6 548 29.6
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 5.3e-28 130.2 597 28.3
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 5.3e-28 130.2 333 34.2
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 6.9e-28 129.8 374 31.8
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 9.1e-28 129.4 595 29.7
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 9.1e-28 129.4 636 27.5
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 9.1e-28 129.4 751 27.0
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 2.0e-27 128.3 636 28.8
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 2.6e-27 127.9 379 32.2
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 4.5e-27 127.1 368 32.6
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 1.0e-26 125.9 662 27.2
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.0e-26 125.9 597 28.0
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 1.0e-26 125.9 609 28.6
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 1.3e-26 125.6 365 32.3
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 1.7e-26 125.2 614 29.8
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 3.8e-26 124.0 666 27.3
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 5.0e-26 123.6 369 32.0
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 5.0e-26 123.6 364 31.9
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 6.5e-26 123.2 636 26.9
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 1.4e-25 122.1 665 27.7
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 1.9e-25 121.7 587 29.3
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 4.2e-25 120.6 372 30.1
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 7.2e-25 119.8 356 30.9
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 9.4e-25 119.4 621 26.6
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 1.6e-24 118.6 363 32.0
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 1.6e-24 118.6 587 29.3
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 2.1e-24 118.2 660 28.6
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 2.7e-24 117.9 382 30.9
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 2.7e-24 117.9 440 29.3
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 3.6e-24 117.5 377 30.5
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 3.6e-24 117.5 377 30.5
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 4.7e-24 117.1 578 28.5
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 4.7e-24 117.1 675 27.3
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 6.1e-24 116.7 570 28.4
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 8.0e-24 116.3 363 31.7
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 8.0e-24 116.3 433 28.4
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 2.3e-23 114.8 453 30.9
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 3.9e-23 114.0 645 26.2
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 1.1e-22 112.5 629 27.2
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 1.5e-22 112.1 353 30.3
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 3.3e-22 110.9 445 29.0
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 3.3e-22 110.9 371 29.6
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 4.4e-22 110.5 615 26.2
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 5.7e-22 110.2 377 28.9
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 7.4e-22 109.8 679 26.8
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 9.7e-22 109.4 357 30.8
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 9.7e-22 109.4 616 25.6
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.7e-21 108.6 687 26.9
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 3.7e-21 107.5 532 29.1
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 6.3e-21 106.7 412 26.7
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 8.2e-21 106.3 351 30.2
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 1.1e-20 105.9 358 28.5
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 4.1e-20 104.0 359 29.5
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 4.1e-20 104.0 359 29.5
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 9.1e-20 102.8 346 29.8
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 9.1e-20 102.8 722 25.3
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 9.1e-20 102.8 391 28.4
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 1.6e-19 102.1 351 29.1
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 3.5e-19 100.9 644 26.6
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 1.0e-18 99.4 353 27.8
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 1.0e-18 99.4 344 29.7
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.1e-17 95.9 369 29.5
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.5e-17 95.5 361 30.5
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.9e-17 95.1 356 29.8
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 2.5e-17 94.7 388 27.6
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 2.5e-17 94.7 357 29.7
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 3.2e-17 94.4 624 26.1
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.2e-17 94.4 619 25.7
SGA_v2.0_scaffold121G33034 Striga asiatica HOM05D005642 ORTHO05D006672 3.2e-17 94.4 214 36.0
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 4.2e-17 94.0 627 25.4
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 2.7e-16 91.3 356 28.4
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 3.6e-16 90.9 641 25.3
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 4.7e-16 90.5 645 25.3
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 1.0e-15 89.4 208 35.6
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 2.3e-15 88.2 504 25.6
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.5e-14 85.5 436 25.9
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 7.5e-14 83.2 282 29.1
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 3.7e-13 80.9 243 33.3
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 3.7e-13 80.9 669 23.8
SGA_v2.0_scaffold169G38591 Striga asiatica HOM05D005642 ORTHO05D006672 5.3e-12 77.0 163 37.4
unitig_0.g2822 Utricularia gibba HOM05D005642 ORTHO05D006672 2.7e-11 74.7 176 34.7
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 5.9e-11 73.6 474 25.5
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 1.3e-10 72.4 225 31.6
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 2.2e-10 71.6 228 32.5
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 6.5e-10 70.1 358 27.1
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 1.9e-09 68.6 226 31.9
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 1.9e-09 68.6 218 29.8
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 2.5e-09 68.2 240 29.6
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 3.2e-09 67.8 326 28.2
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 3.2e-09 67.8 234 30.8
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 5.5e-09 67.0 530 23.8
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 5.5e-09 67.0 149 38.3
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 7.2e-09 66.6 153 37.3
BcaC04g19408 Brassica carinata HOM05D006756 ORTHO05D001869 2.3e-07 61.6 168 31.5
BraA10t44048Z Brassica rapa HOM05D006756 ORTHO05D001869 2.3e-07 61.6 181 28.2
A10p19720 Brassica napus HOM05D007647 ORTHO05D009644 3.0e-07 61.2 175 30.9
Sc18g0000500 Simmondsia chinensis HOM05D006756 ORTHO05D001869 4.0e-07 60.8 243 30.9
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 6.8e-07 60.1 206 26.7
Dinv36508 Davidia involucrata HOM05D006756 ORTHO05D001869 1.5e-06 58.9 243 30.9
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 3.4e-06 57.8 303 26.7
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 4.4e-06 57.4 191 29.3
Carub.0006s1860 Capsella rubella HOM05D006756 ORTHO05D001869 5.7e-06 57.0 197 29.4
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 5.7e-06 57.0 325 25.8
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 9.8e-06 56.2 68 52.9


User provided reference genes

Program Settings