Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 6.0e-115 417.5 214 100.0
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 1.6e-83 313.2 218 76.6
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 7.9e-83 310.8 220 77.3
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.0e-82 310.5 217 74.7
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 5.3e-79 298.1 216 72.7
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.2e-77 292.7 216 71.3
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 8.2e-72 274.2 209 68.9
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 1.0e-69 267.3 209 67.9
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.5e-68 263.5 215 65.6
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.5e-68 263.5 215 65.6
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 6.1e-67 258.1 202 67.3
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 6.1e-67 258.1 205 64.4
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 4.0e-66 255.4 206 65.0
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 4.4e-65 251.9 213 62.9
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.7e-64 250.0 205 64.4
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 2.8e-64 249.2 209 62.7
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 2.8e-64 249.2 202 63.9
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.8e-63 246.5 209 61.7
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 3.1e-63 245.7 209 60.8
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 4.1e-63 245.4 205 63.4
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 7.0e-63 244.6 209 61.7
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 1.6e-62 243.4 207 61.8
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 2.0e-62 243.0 211 63.5
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 3.5e-62 242.3 199 62.8
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 3.5e-62 242.3 199 62.8
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 7.7e-62 241.1 205 61.0
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.3e-61 240.4 190 67.4
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 2.2e-61 239.6 204 63.2
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.9e-61 239.2 212 62.3
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 3.8e-61 238.8 208 61.1
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.5e-60 236.9 212 61.8
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.9e-60 236.5 191 64.4
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 2.5e-60 236.1 208 61.5
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 4.2e-60 235.3 208 59.1
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 7.2e-60 234.6 215 60.9
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 1.6e-59 233.4 206 58.3
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.7e-59 232.6 222 58.1
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 2.3e-58 229.6 204 61.3
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 1.5e-57 226.9 208 57.2
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 2.6e-57 226.1 203 59.1
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 3.4e-57 225.7 204 57.8
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 4.4e-57 225.3 204 57.4
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 4.4e-57 225.3 203 59.6
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.7e-56 223.4 218 58.3
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.7e-56 223.4 209 57.4
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 2.2e-56 223.0 213 56.3
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 2.8e-56 222.6 202 58.9
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 3.7e-56 222.2 202 59.9
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 3.7e-56 222.2 203 59.1
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 8.3e-56 221.1 209 56.9
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 8.3e-56 221.1 211 57.3
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 1.1e-55 220.7 209 56.0
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 2.4e-55 219.5 201 57.2
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 2.4e-55 219.5 201 57.2
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 3.1e-55 219.2 204 54.9
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 3.1e-55 219.2 205 57.1
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 3.1e-55 219.2 181 63.0
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 4.1e-55 218.8 217 54.4
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 4.1e-55 218.8 202 58.4
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 5.4e-55 218.4 203 56.2
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 9.1e-55 217.6 203 56.7
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 2.7e-54 216.1 205 56.6
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 5.9e-54 214.9 214 53.7
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 1.0e-53 214.2 206 55.8
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.3e-53 213.8 210 56.2
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 1.7e-53 213.4 208 54.3
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.9e-53 212.6 210 55.2
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 2.9e-53 212.6 196 56.6
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 5.0e-53 211.8 202 55.9
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.1e-52 210.7 206 54.9
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.2e-52 209.1 206 53.9
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 5.5e-52 208.4 208 54.3
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 2.1e-51 206.5 226 50.9
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 2.1e-51 206.5 199 56.3
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.1e-51 206.5 208 53.8
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 2.1e-51 206.5 205 53.2
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 2.1e-51 206.5 202 53.5
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 3.6e-51 205.7 221 51.1
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 4.7e-51 205.3 211 54.5
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 4.7e-51 205.3 226 50.4
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 4.7e-51 205.3 202 54.5
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 1.0e-50 204.1 208 54.8
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 1.0e-50 204.1 186 57.5
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 1.0e-50 204.1 208 54.8
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 1.0e-50 204.1 205 52.7
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 1.0e-50 204.1 212 53.3
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 4.0e-50 202.2 217 53.5
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 5.2e-50 201.8 206 53.4
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 5.2e-50 201.8 210 51.9
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 8.8e-50 201.1 208 50.5
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 3.4e-49 199.1 205 50.7
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 4.4e-49 198.7 217 52.5
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 7.5e-49 198.0 206 52.4
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 9.8e-49 197.6 202 52.0
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 1.7e-48 196.8 216 51.4
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.8e-48 196.1 208 51.4
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 8.3e-48 194.5 212 52.4
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 1.4e-47 193.7 201 52.2
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.4e-47 193.7 204 51.0
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 1.8e-47 193.4 210 53.8
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 1.8e-47 193.4 207 52.7
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.0e-45 187.6 201 54.2
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 3.8e-45 185.7 201 53.7
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 3.8e-45 185.7 214 49.1
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 1.9e-44 183.3 167 58.7
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 2.5e-44 183.0 205 48.3
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 7.3e-44 181.4 205 54.1
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 2.6e-41 172.9 203 47.3
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 7.5e-41 171.4 140 61.4
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 9.8e-41 171.0 205 48.3
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 5.4e-39 165.2 225 44.9
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 1.2e-38 164.1 205 47.3
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.7e-37 160.2 123 69.9
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 8.6e-37 157.9 135 61.5
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 4.3e-36 155.6 206 47.1
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 4.7e-35 152.1 203 43.3
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 1.3e-32 144.1 204 44.6
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 9.2e-31 137.9 121 62.8
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 3.6e-27 125.9 199 39.2
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 5.2e-26 122.1 199 36.7
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.2e-25 120.9 88 68.2
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 7.5e-25 118.2 199 35.2
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 7.5e-25 118.2 199 35.2
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 1.3e-24 117.5 180 38.9
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 1.7e-24 117.1 199 35.7
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 5.4e-23 112.1 199 36.2
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 2.1e-22 110.2 189 34.4
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 6.0e-22 108.6 201 35.8
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 3.0e-21 106.3 184 32.1
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 9.5e-20 101.3 183 32.8
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 1.2e-19 100.9 199 32.7
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 3.6e-19 99.4 201 35.3
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 9.9e-17 91.3 186 33.3
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 3.8e-16 89.4 178 34.8
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 3.5e-14 82.8 159 31.4
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 4.6e-14 82.4 97 37.1
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 1.5e-12 77.4 74 58.1
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 2.5e-12 76.6 70 60.0
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 2.5e-12 76.6 70 60.0
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 2.5e-12 76.6 124 42.7
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 4.3e-12 75.9 239 26.4
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 4.3e-12 75.9 66 65.2
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 1.2e-11 74.3 106 37.7
Oeu042654.1 Olea europaea HOM05D004800 ORTHO05D005842 8.1e-11 71.6 94 51.1
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 8.1e-11 71.6 61 62.3
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 1.2e-06 57.8 65 41.5


User provided reference genes

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