Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 2.2e-138 495.7 272 100.0
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 2.6e-70 269.6 258 64.7
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.6e-64 250.4 254 63.0
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 8.9e-63 244.6 257 58.4
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 4.1e-60 235.7 253 57.7
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 7.8e-59 231.5 251 56.2
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 9.5e-57 224.6 252 59.1
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 8.0e-56 221.5 250 56.0
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 8.9e-55 218.0 254 49.6
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 1.5e-54 217.2 257 54.1
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.0e-54 216.9 258 54.7
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.6e-54 216.5 258 54.7
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 5.8e-54 215.3 265 51.3
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 9.8e-54 214.5 252 50.8
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 9.8e-54 214.5 283 54.8
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 2.9e-53 213.0 253 49.0
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 2.9e-53 213.0 253 55.3
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 2.9e-53 213.0 253 55.3
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 2.9e-53 213.0 260 52.7
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 3.7e-53 212.6 256 52.3
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 4.9e-53 212.2 257 51.4
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 6.4e-53 211.8 256 49.2
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 4.1e-52 209.1 260 56.5
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 4.1e-52 209.1 258 53.9
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 5.4e-52 208.8 260 50.4
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 5.4e-52 208.8 260 50.0
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.2e-51 207.6 253 51.0
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.6e-51 207.2 256 48.8
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 3.5e-51 206.1 259 45.9
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 6.0e-51 205.3 250 52.0
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 6.0e-51 205.3 253 52.6
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 2.3e-50 203.4 264 50.0
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 3.0e-50 203.0 171 65.5
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 5.0e-50 202.2 257 45.5
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 5.0e-50 202.2 264 53.8
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 6.6e-50 201.8 257 50.2
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 6.6e-50 201.8 255 50.2
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.1e-49 201.1 253 49.4
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.5e-49 200.7 257 47.1
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.5e-49 200.7 256 55.9
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.5e-49 200.7 252 49.2
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.9e-49 200.3 256 46.9
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 1.9e-49 200.3 252 51.6
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.5e-49 199.9 256 55.5
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 4.3e-49 199.1 260 50.8
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.3e-49 199.1 264 48.5
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 4.3e-49 199.1 260 51.5
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 5.6e-49 198.7 257 45.9
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 5.6e-49 198.7 264 51.9
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.6e-49 198.7 264 48.1
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 5.6e-49 198.7 254 53.5
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.3e-49 198.4 264 48.1
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 9.5e-49 198.0 261 50.2
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.2e-48 197.6 259 53.7
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 2.8e-48 196.4 261 53.6
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 2.8e-48 196.4 263 51.3
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 4.7e-48 195.7 257 50.6
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.4e-47 194.1 231 55.0
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.4e-47 194.1 265 47.2
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 4.0e-47 192.6 261 46.7
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 5.2e-47 192.2 296 46.6
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 1.2e-46 191.0 253 47.4
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.5e-46 190.7 248 48.0
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 2.0e-46 190.3 174 60.3
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 2.6e-46 189.9 279 50.5
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 5.8e-46 188.7 179 55.9
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 7.5e-46 188.3 207 57.0
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 2.2e-45 186.8 266 50.8
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 2.2e-45 186.8 250 46.8
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.7e-45 186.0 259 46.3
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 3.7e-45 186.0 255 47.8
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 4.9e-45 185.7 254 50.0
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 6.4e-45 185.3 256 44.9
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 8.3e-45 184.9 262 50.0
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.1e-44 184.5 252 50.4
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.4e-44 184.1 252 44.0
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 2.4e-44 183.3 280 44.3
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.4e-44 183.3 254 44.1
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.2e-44 183.0 275 49.1
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 4.1e-44 182.6 255 49.4
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 4.1e-44 182.6 258 46.9
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 4.1e-44 182.6 266 48.5
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 9.2e-44 181.4 252 47.6
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 2.1e-43 180.3 261 50.6
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 2.7e-43 179.9 254 46.9
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 4.6e-43 179.1 253 49.8
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.6e-43 179.1 264 43.6
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 7.8e-43 178.3 253 46.2
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 1.0e-42 177.9 275 43.6
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.0e-42 177.9 250 45.6
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 3.0e-42 176.4 259 47.1
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 5.1e-42 175.6 260 48.5
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 8.6e-42 174.9 253 47.4
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 8.6e-42 174.9 333 40.2
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 1.1e-41 174.5 265 43.8
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 1.1e-41 174.5 263 45.6
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.1e-41 174.5 263 46.8
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 1.1e-41 174.5 263 45.6
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 1.1e-41 174.5 259 44.8
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.5e-41 174.1 181 51.9
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 4.3e-41 172.6 257 43.6
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 7.3e-41 171.8 262 46.2
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 7.3e-41 171.8 254 42.5
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 7.3e-41 171.8 368 38.9
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.1e-39 167.9 254 46.9
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.4e-39 167.5 246 45.5
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.4e-39 167.5 271 40.2
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.4e-39 167.5 177 50.8
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 1.4e-39 167.5 255 47.5
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.3e-39 166.8 161 55.3
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 2.0e-38 163.7 246 43.5
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 2.0e-38 163.7 245 46.5
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.0e-38 163.7 252 44.4
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 2.0e-38 163.7 267 44.9
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 2.6e-38 163.3 146 66.4
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 2.6e-38 163.3 166 48.8
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 5.8e-38 162.2 270 45.6
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 9.9e-38 161.4 271 48.0
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 2.2e-37 160.2 263 39.5
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 2.4e-36 156.8 256 43.4
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 5.4e-36 155.6 252 42.9
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.3e-34 151.0 257 41.6
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 1.5e-33 147.5 176 48.3
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.3e-33 146.4 153 54.9
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 8.1e-32 141.7 369 36.0
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.4e-23 114.4 239 34.3
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.4e-23 113.6 258 38.0
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 4.0e-23 112.8 219 35.6
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 1.2e-22 111.3 132 49.2
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 9.9e-22 108.2 216 33.3
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 3.2e-20 103.2 163 39.9
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 7.1e-20 102.1 243 40.3
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 9.3e-20 101.7 123 58.5
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 4.6e-19 99.4 125 58.4
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 4.6e-19 99.4 141 44.7
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.3e-18 97.1 60 71.7
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 3.3e-17 93.2 59 76.3
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 3.6e-16 89.7 133 39.1
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 4.8e-16 89.4 211 34.1
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 8.1e-16 88.6 129 44.2
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 6.9e-15 85.5 155 34.2
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 5.8e-14 82.4 216 32.9
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 2.2e-13 80.5 118 49.2
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.6e-08 64.3 41 70.7
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 6.2e-08 62.4 162 33.3
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 4.0e-07 59.7 51 51.0
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 4.0e-07 59.7 51 51.0


User provided reference genes

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