Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 2.3e-128 462.2 229 100.0
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.7e-99 366.3 233 79.0
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.1e-98 363.6 233 77.7
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 3.7e-94 348.6 235 74.9
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 6.3e-94 347.8 231 77.1
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 3.1e-93 345.5 231 77.1
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 6.5e-91 337.8 230 74.8
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 6.5e-91 337.8 230 74.8
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 1.1e-90 337.0 229 76.0
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 1.1e-90 337.0 233 71.7
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 1.1e-90 337.0 230 74.8
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 1.6e-89 333.2 229 76.4
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 4.3e-87 325.1 237 69.6
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 8.2e-86 320.9 222 72.1
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 9.1e-85 317.4 235 69.4
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.2e-84 317.0 236 69.9
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 1.0e-83 313.9 238 68.9
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.9e-82 309.7 236 68.2
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 3.6e-81 305.4 223 68.6
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.8e-80 303.1 230 67.8
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 3.9e-80 302.0 237 65.8
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.0e-79 299.7 233 68.2
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 2.0e-79 299.7 233 68.2
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 2.0e-79 299.7 237 64.1
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 3.3e-79 298.9 226 65.5
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 4.4e-79 298.5 232 66.4
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 7.4e-79 297.7 231 65.8
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.7e-78 295.4 233 64.4
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 6.3e-78 294.7 228 65.4
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 8.2e-78 294.3 233 63.9
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.1e-77 293.9 194 71.1
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 1.8e-77 293.1 231 64.5
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 1.8e-77 293.1 233 65.7
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 2.4e-77 292.7 216 68.5
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 4.1e-77 292.0 240 64.2
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 4.1e-77 292.0 234 65.0
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.6e-76 289.3 201 68.2
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 2.6e-76 289.3 235 65.5
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 3.5e-76 288.9 230 64.8
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 5.9e-76 288.1 226 66.8
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.3e-75 287.0 187 71.7
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.8e-75 285.4 187 71.1
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 5.0e-75 285.0 231 63.6
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 5.0e-75 285.0 236 61.9
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 5.0e-75 285.0 235 62.6
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 6.5e-75 284.6 189 69.8
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 8.5e-75 284.3 235 64.3
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 8.5e-75 284.3 229 65.1
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 1.4e-74 283.5 230 63.5
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 1.9e-74 283.1 232 63.8
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 2.5e-74 282.7 230 63.5
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 3.2e-74 282.3 232 62.5
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 5.5e-74 281.6 237 61.2
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 7.2e-74 281.2 234 62.8
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 7.2e-74 281.2 217 64.5
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 1.2e-73 280.4 230 64.3
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.6e-73 280.0 230 62.6
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 6.1e-73 278.1 232 62.5
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 8.0e-73 277.7 233 62.2
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 1.0e-72 277.3 227 63.4
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.4e-72 276.9 232 62.9
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 2.3e-72 276.2 192 67.7
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 2.3e-72 276.2 192 67.7
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 3.0e-72 275.8 233 62.2
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 3.9e-72 275.4 228 63.6
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 8.8e-72 274.2 226 63.7
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 1.1e-71 273.9 224 61.6
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.1e-71 273.9 224 61.2
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.5e-71 273.5 224 61.2
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 4.4e-71 271.9 210 63.8
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 4.4e-71 271.9 193 68.4
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 4.4e-71 271.9 185 69.2
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 4.4e-71 271.9 196 67.9
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 5.7e-71 271.6 192 67.7
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 5.7e-71 271.6 192 67.7
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 5.7e-71 271.6 192 67.7
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 5.7e-71 271.6 227 61.7
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 5.7e-71 271.6 224 60.3
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 9.7e-71 270.8 228 63.6
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 2.2e-70 269.6 232 61.6
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 2.2e-70 269.6 229 59.8
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 2.8e-70 269.2 193 68.4
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 4.8e-70 268.5 217 61.3
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 8.2e-70 267.7 231 61.5
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 8.2e-70 267.7 213 62.9
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 2.4e-69 266.2 230 60.9
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 2.4e-69 266.2 184 69.6
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.0e-68 263.1 232 59.5
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 5.9e-68 261.5 228 59.2
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 7.7e-68 261.2 219 60.3
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 2.2e-67 259.6 226 61.5
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.9e-67 259.2 191 65.4
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 3.2e-66 255.8 224 60.3
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 9.4e-66 254.2 182 67.0
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 3.6e-65 252.3 184 66.8
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.7e-62 243.4 194 62.4
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.2e-62 243.0 176 66.5
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 6.3e-62 241.5 223 53.8
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 1.1e-61 240.7 228 57.0
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 1.4e-61 240.4 193 61.7
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 2.4e-61 239.6 184 64.1
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.2e-60 237.3 179 63.1
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 2.0e-60 236.5 214 58.4
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 2.0e-60 236.5 225 55.1
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 3.6e-57 225.7 226 50.9
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 3.6e-57 225.7 179 60.9
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 1.4e-56 223.8 134 76.9
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 5.7e-55 218.4 146 69.9
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.3e-46 190.7 148 62.8
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 2.2e-46 189.9 148 62.2
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 8.3e-46 188.0 149 60.4
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 4.1e-45 185.7 148 60.8
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 5.4e-45 185.3 148 59.5
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 7.0e-45 184.9 147 59.9
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 9.2e-45 184.5 234 47.4
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 1.2e-44 184.1 149 58.4
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-44 184.1 149 58.4
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 1.2e-44 184.1 149 58.4
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 1.6e-44 183.7 149 58.4
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 1.6e-44 183.7 149 58.4
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 2.7e-44 183.0 149 58.4
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.7e-44 183.0 148 59.5
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 3.5e-44 182.6 187 50.8
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 7.8e-44 181.4 149 57.7
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 2.3e-43 179.9 149 57.7
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.6e-41 173.7 169 49.7
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 6.8e-40 168.3 170 48.2
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.1e-37 159.1 102 76.5
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 1.1e-34 151.0 162 46.3
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 3.3e-34 149.4 103 66.0
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 5.2e-32 142.1 105 62.9
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 2.9e-30 136.3 146 47.9
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 3.5e-28 129.4 170 40.6
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 7.8e-28 128.3 234 37.2
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 1.0e-27 127.9 131 51.1
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 8.6e-27 124.8 88 64.8
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.6e-25 120.6 131 57.3
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.3e-24 116.7 155 40.0
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.9e-22 109.8 155 37.4
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.2e-20 104.4 172 38.4
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 2.1e-20 103.6 168 34.5
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 6.0e-20 102.1 183 35.5
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 6.0e-20 102.1 101 52.5
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 3.9e-19 99.4 229 33.2
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 6.6e-19 98.6 215 32.1
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 8.6e-19 98.2 71 60.6
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 6.2e-17 92.0 104 56.7
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 6.2e-17 92.0 59 76.3
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 8.4e-14 81.6 104 39.4
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 6.9e-08 62.0 84 36.9
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 6.9e-08 62.0 84 36.9
Hma1.2p1_1893F.1_g306730 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 2.6e-07 60.1 59 42.4
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 9.9e-07 58.2 48 58.3


User provided reference genes

Program Settings