Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 5.2e-37 157.1 76 100.0
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 1.8e-21 105.5 77 63.6
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 1.2e-17 92.8 79 62.0
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 2.7e-17 91.7 77 58.4
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 3.5e-17 91.3 80 58.8
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 4.6e-17 90.9 77 59.7
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 6.0e-17 90.5 61 67.2
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 1.0e-16 89.7 78 57.7
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 1.3e-16 89.4 76 59.2
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 2.3e-16 88.6 61 65.6
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 5.1e-16 87.4 61 65.6
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 8.6e-16 86.7 82 54.9
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 8.6e-16 86.7 61 65.6
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 1.1e-15 86.3 61 63.9
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 1.1e-15 86.3 61 67.2
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 1.5e-15 85.9 62 62.9
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 1.9e-15 85.5 76 53.9
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.9e-15 85.5 78 56.4
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 2.5e-15 85.1 77 54.5
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 2.5e-15 85.1 60 68.3
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 2.5e-15 85.1 79 54.4
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 2.5e-15 85.1 79 54.4
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 2.5e-15 85.1 79 54.4
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 4.3e-15 84.3 62 62.9
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 4.3e-15 84.3 61 63.9
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 5.6e-15 84.0 64 60.9
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 5.6e-15 84.0 79 57.0
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 5.6e-15 84.0 61 67.2
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 7.3e-15 83.6 61 63.9
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 9.5e-15 83.2 63 65.1
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 2.1e-14 82.0 75 54.7
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 2.8e-14 81.6 78 55.1
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 3.6e-14 81.3 61 62.3
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 3.6e-14 81.3 61 60.7
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 3.6e-14 81.3 61 60.7
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 3.6e-14 81.3 61 60.7
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 4.7e-14 80.9 75 54.7
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 6.2e-14 80.5 62 62.9
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 6.2e-14 80.5 64 60.9
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 8.1e-14 80.1 74 56.8
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 8.1e-14 80.1 74 56.8
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 8.1e-14 80.1 74 56.8
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 8.1e-14 80.1 61 59.0
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 8.1e-14 80.1 63 63.5
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 8.1e-14 80.1 75 61.3
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 1.1e-13 79.7 81 49.4
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 1.1e-13 79.7 66 60.6
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.4e-13 79.3 60 60.0
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 1.4e-13 79.3 61 57.4
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 2.4e-13 78.6 65 63.1
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 2.4e-13 78.6 74 55.4
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 2.4e-13 78.6 74 55.4
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 3.1e-13 78.2 76 53.9
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 3.1e-13 78.2 62 61.3
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 3.1e-13 78.2 63 63.5
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 4.0e-13 77.8 81 53.1
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 4.0e-13 77.8 61 60.7
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 5.2e-13 77.4 61 59.0
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 6.8e-13 77.0 74 54.1
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 6.8e-13 77.0 74 55.4
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 8.9e-13 76.6 74 54.1
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 8.9e-13 76.6 64 60.9
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 1.2e-12 76.3 77 51.9
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 1.5e-12 75.9 71 56.3
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 1.5e-12 75.9 62 58.1
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 2.0e-12 75.5 84 46.4
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 2.0e-12 75.5 66 60.6
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 4.4e-12 74.3 63 55.6
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 5.8e-12 73.9 62 58.1
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 5.8e-12 73.9 64 56.2
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 5.8e-12 73.9 79 49.4
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 7.6e-12 73.6 63 58.7
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 7.6e-12 73.6 65 56.9
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 7.6e-12 73.6 61 55.7
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 9.9e-12 73.2 63 55.6
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 9.9e-12 73.2 65 55.4
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 1.7e-11 72.4 45 66.7
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 1.7e-11 72.4 74 52.7
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 6.4e-11 70.5 66 51.5
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 8.4e-11 70.1 74 52.7
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 1.1e-10 69.7 64 54.7
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 1.4e-10 69.3 43 65.1
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 1.4e-10 69.3 63 52.4
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 1.4e-10 69.3 71 52.1
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 2.4e-10 68.6 77 49.4
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 3.2e-10 68.2 82 46.3
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 4.1e-10 67.8 65 52.3
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 9.2e-10 66.6 63 52.4
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 2.1e-09 65.5 73 49.3
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 2.1e-09 65.5 73 49.3
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 2.7e-09 65.1 78 47.4
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 4.6e-09 64.3 67 52.2
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 4.6e-09 64.3 71 50.7
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 6.0e-09 63.9 62 54.8
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 1.0e-08 63.2 79 45.6
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 2.3e-08 62.0 35 74.3
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 3.3e-07 58.2 48 62.5
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.6e-06 55.8 32 71.9
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 2.1e-06 55.5 42 59.5
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 3.6e-06 54.7 33 63.6


User provided reference genes

Program Settings