Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 3.3e-187 658.3 345 100.0
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 4.6e-165 584.7 345 86.4
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 4.6e-165 584.7 345 87.0
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 5.1e-156 554.7 345 82.6
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 8.7e-156 553.9 345 82.3
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 1.1e-155 553.5 345 82.9
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.1e-155 553.5 345 81.4
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.1e-155 553.5 345 81.4
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.6e-154 549.7 345 79.7
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 3.6e-154 548.5 345 78.8
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 8.1e-154 547.4 392 75.5
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 4.0e-153 545.0 346 80.6
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 4.0e-153 545.0 344 79.4
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 3.4e-152 542.0 346 80.9
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 8.4e-151 537.3 345 80.3
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.4e-150 536.6 345 78.0
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 1.4e-150 536.6 345 78.6
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 1.4e-150 536.6 348 79.9
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 2.4e-150 535.8 345 78.8
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 1.2e-149 533.5 345 80.0
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 6.0e-149 531.2 345 79.7
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 7.9e-149 530.8 345 79.4
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.3e-148 530.0 345 78.0
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 3.9e-148 528.5 345 77.1
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 6.7e-148 527.7 345 76.8
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 6.7e-148 527.7 345 77.1
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 8.7e-148 527.3 345 77.1
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.9e-147 526.2 345 77.1
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 1.9e-147 526.2 345 80.3
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 3.3e-147 525.4 345 78.3
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 4.3e-147 525.0 344 78.5
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 7.4e-147 524.2 347 78.1
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.4e-147 524.2 345 76.8
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 7.4e-147 524.2 345 76.8
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 2.8e-146 522.3 345 78.0
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 8.1e-146 520.8 346 77.5
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.1e-145 520.4 345 77.1
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.1e-145 520.4 324 82.1
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.4e-145 520.0 345 77.7
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 1.8e-145 519.6 345 78.0
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 6.9e-145 517.7 343 75.2
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 6.9e-145 517.7 346 76.6
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 1.5e-144 516.5 345 76.8
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 3.4e-144 515.4 343 74.6
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 4.5e-144 515.0 343 74.9
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 4.5e-144 515.0 343 74.9
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 4.5e-144 515.0 346 76.3
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 5.8e-144 514.6 343 74.9
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 7.6e-144 514.2 350 76.0
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 9.9e-144 513.8 347 78.1
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 1.3e-143 513.5 343 74.6
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 1.3e-143 513.5 343 74.6
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 1.3e-143 513.5 343 74.6
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 1.3e-143 513.5 343 74.6
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.7e-143 513.1 345 77.4
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.7e-143 513.1 345 77.1
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 2.2e-143 512.7 336 77.7
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 2.2e-143 512.7 343 75.8
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 3.8e-143 511.9 343 74.1
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 3.8e-143 511.9 343 74.6
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 3.8e-143 511.9 343 74.6
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 4.9e-143 511.5 344 76.5
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.4e-142 510.0 345 75.4
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 4.2e-142 508.4 343 74.1
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 7.1e-142 507.7 343 74.3
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 6.0e-141 504.6 355 72.1
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 1.0e-140 503.8 343 73.5
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 1.1e-139 500.4 345 74.2
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.1e-139 500.4 347 76.4
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 3.3e-139 498.8 367 73.0
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 5.6e-139 498.0 345 73.0
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 7.4e-139 497.7 355 71.0
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 1.8e-137 493.0 347 73.2
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.4e-137 492.7 345 75.1
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 3.1e-137 492.3 345 74.5
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 5.3e-137 491.5 345 73.0
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 1.5e-136 490.0 345 71.0
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 1.5e-136 490.0 347 72.6
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 2.0e-136 489.6 345 72.2
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 3.4e-136 488.8 345 71.9
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 3.4e-136 488.8 345 73.3
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 3.4e-136 488.8 343 74.1
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 1.3e-135 486.9 337 75.1
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 7.1e-134 481.1 351 70.7
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.1e-133 479.6 336 70.2
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 1.0e-132 477.2 358 70.1
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 5.1e-132 474.9 415 64.3
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.4e-129 466.8 345 71.0
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 1.2e-128 463.8 336 72.3
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 2.6e-128 462.6 339 68.7
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.9e-126 456.4 308 77.3
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.2e-126 455.7 313 76.0
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 7.2e-126 454.5 309 73.5
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 2.7e-125 452.6 336 67.3
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 3.9e-124 448.7 295 79.7
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 9.7e-123 444.1 272 82.4
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.0e-119 434.1 345 67.5
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 1.7e-119 433.3 397 61.7
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 1.4e-118 430.3 308 70.1
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 4.2e-118 428.7 272 77.9
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 1.2e-117 427.2 345 65.5
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 1.2e-117 427.2 343 67.1
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 8.8e-116 421.0 328 70.7
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 3.4e-112 409.1 345 62.3
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 5.9e-112 408.3 384 57.8
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 3.8e-111 405.6 418 56.2
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 5.0e-111 405.2 345 61.7
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 2.7e-109 399.4 293 72.0
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 4.5e-104 382.1 343 60.9
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 8.0e-101 371.3 222 83.8
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 7.5e-99 364.8 222 82.0
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 5.9e-96 355.1 344 59.0
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 9.4e-94 347.8 250 72.4
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.2e-93 347.4 435 51.3
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.1e-93 346.7 345 57.1
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.0e-88 330.1 204 79.9
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 1.4e-81 307.4 311 52.4
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 6.1e-77 292.0 249 63.9
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 6.8e-76 288.5 249 61.0
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 4.9e-74 282.3 200 70.5
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 1.6e-69 267.3 169 79.3
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 8.0e-69 265.0 302 45.7
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 5.4e-65 252.3 254 56.3
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 7.3e-54 215.3 144 77.1
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 6.2e-53 212.2 144 70.8
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 3.1e-52 209.9 238 53.4
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 8.4e-50 201.8 165 64.2
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 2.3e-47 193.7 194 53.6
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 1.1e-46 191.4 348 35.6
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 5.2e-44 182.6 131 73.3
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 2.0e-43 180.6 124 75.8
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 4.9e-42 176.0 184 54.3
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 1.9e-41 174.1 336 33.6
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 5.4e-41 172.6 323 32.5
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 7.1e-41 172.2 110 80.9
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 1.3e-39 167.9 313 36.4
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 1.8e-28 131.0 74 90.5
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 2.4e-28 130.6 113 61.9
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.6e-27 125.6 95 66.3
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 3.3e-22 110.2 106 57.5
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.4e-20 104.0 95 64.2
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 5.8e-19 99.4 73 64.4


User provided reference genes

Program Settings