Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 3.2e-100 368.6 211 100.0
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.0e-37 161.0 100 73.0
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 8.5e-37 157.9 100 76.0
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 5.5e-36 155.2 100 73.0
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.0e-33 146.7 100 69.0
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 5.7e-33 145.2 98 68.4
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 7.4e-33 144.8 100 70.0
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 1.3e-32 144.1 148 52.7
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.2e-32 143.3 100 67.0
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 4.8e-32 142.1 100 65.0
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 4.8e-32 142.1 100 66.0
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 8.2e-32 141.4 100 66.0
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.4e-31 140.6 100 65.0
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 1.8e-31 140.2 100 65.0
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 1.8e-31 140.2 100 67.0
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 3.1e-31 139.4 99 66.7
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 4.1e-31 139.0 100 66.0
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 6.9e-31 138.3 101 65.3
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.2e-30 137.5 100 63.0
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 1.2e-30 137.5 100 66.0
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.2e-30 137.5 99 64.6
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 1.5e-30 137.1 100 63.0
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.5e-30 137.1 100 65.0
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.6e-30 136.3 100 64.0
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 3.4e-30 136.0 100 66.0
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 4.5e-30 135.6 100 62.0
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 4.5e-30 135.6 100 62.0
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 5.9e-30 135.2 98 64.3
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 5.9e-30 135.2 98 68.4
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.0e-29 134.4 101 65.3
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 1.3e-29 134.0 98 63.3
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 2.9e-29 132.9 98 63.3
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 6.5e-29 131.7 97 66.0
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 6.5e-29 131.7 98 61.2
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 8.5e-29 131.3 98 67.3
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 8.5e-29 131.3 100 60.0
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 1.4e-28 130.6 100 62.0
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 1.4e-28 130.6 100 62.0
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 1.4e-28 130.6 100 62.0
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.4e-28 130.6 103 61.2
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 2.5e-28 129.8 100 62.0
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 2.5e-28 129.8 96 67.7
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 4.2e-28 129.0 99 59.6
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 4.2e-28 129.0 100 61.0
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 4.2e-28 129.0 101 65.3
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 5.5e-28 128.6 100 61.0
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 7.2e-28 128.3 99 61.6
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 7.2e-28 128.3 99 61.6
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 7.2e-28 128.3 100 60.0
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 9.4e-28 127.9 95 64.2
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 9.4e-28 127.9 101 64.4
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 1.6e-27 127.1 100 60.0
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 1.6e-27 127.1 100 61.0
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.6e-27 127.1 100 60.0
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 2.7e-27 126.3 100 60.0
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 3.6e-27 125.9 90 64.4
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 4.7e-27 125.6 90 64.4
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 7.9e-27 124.8 100 59.0
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 7.9e-27 124.8 100 59.0
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 7.9e-27 124.8 100 59.0
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 7.9e-27 124.8 100 59.0
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 7.9e-27 124.8 100 57.0
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 7.9e-27 124.8 100 57.0
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 1.4e-26 124.0 100 59.0
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 1.8e-26 123.6 100 57.0
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 1.8e-26 123.6 105 61.9
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.3e-26 123.2 103 59.2
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.3e-26 123.2 101 56.4
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 3.9e-26 122.5 100 57.0
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.7e-26 121.7 99 58.6
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.1e-25 120.9 96 60.4
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 1.5e-25 120.6 100 61.0
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.6e-25 119.8 101 57.4
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 7.4e-25 118.2 103 57.3
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 9.7e-25 117.9 96 57.3
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 2.8e-24 116.3 101 57.4
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 4.8e-24 115.5 93 60.2
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 1.4e-23 114.0 100 58.0
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 1.4e-23 114.0 100 58.0
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 2.4e-23 113.2 93 57.0
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 2.4e-23 113.2 97 54.6
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 4.1e-23 112.5 102 56.9
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 5.3e-23 112.1 98 53.1
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 2.0e-22 110.2 100 55.0
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 2.2e-21 106.7 88 59.1
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 2.2e-21 106.7 94 57.4
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 6.5e-21 105.1 100 53.0
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 8.5e-21 104.8 105 54.3
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 1.1e-20 104.4 97 57.7
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.9e-20 103.6 82 59.8
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.2e-19 100.9 103 50.5
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.6e-19 100.5 88 54.5
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 8.0e-19 98.2 75 60.0
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 8.0e-19 98.2 79 55.7
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 8.0e-19 98.2 79 55.7
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 2.0e-17 93.6 100 52.0
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 4.4e-17 92.4 86 54.7
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.2e-16 90.1 84 52.4
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 3.7e-16 89.4 83 51.8
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 4.8e-16 89.0 98 49.0
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 4.8e-16 89.0 86 52.3
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 1.1e-15 87.8 83 51.8
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.4e-15 87.4 88 53.4
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 2.4e-15 86.7 78 51.3
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 1.2e-14 84.3 77 51.9
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.0e-14 83.6 63 61.9
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 4.5e-14 82.4 75 50.7
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 5.9e-14 82.0 73 53.4
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.0e-13 81.3 67 53.7
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 1.3e-13 80.9 83 48.2
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 5.0e-13 79.0 71 53.5
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 5.0e-13 79.0 64 60.9
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 6.5e-13 78.6 79 51.9
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.1e-12 77.8 64 57.8
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 1.1e-12 77.8 85 48.2
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 1.5e-12 77.4 80 50.0
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 1.5e-12 77.4 80 50.0
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 1.5e-12 77.4 75 53.3
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 1.9e-12 77.0 62 59.7
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.9e-12 77.0 81 43.2
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.5e-12 76.6 77 50.6
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.5e-12 76.6 77 50.6
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.2e-12 76.3 87 48.3
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 3.2e-12 76.3 68 52.9
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 3.2e-12 76.3 67 53.7
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 4.2e-12 75.9 68 51.5
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 5.5e-12 75.5 70 51.4
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 9.4e-12 74.7 66 53.0
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.2e-11 74.3 68 50.0
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 2.1e-11 73.6 76 51.3
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 2.1e-11 73.6 61 55.7
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 3.6e-11 72.8 69 50.7
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.6e-11 72.8 64 53.1
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 8.0e-11 71.6 71 50.7
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.0e-10 71.2 64 53.1
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.0e-10 71.2 67 50.7
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.4e-10 70.9 64 51.6
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.4e-10 70.9 64 51.6
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 1.8e-10 70.5 91 45.1
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.3e-10 70.1 62 56.5
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.3e-10 70.1 65 50.8
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 4.0e-10 69.3 102 37.3
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 4.0e-10 69.3 64 53.1
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 8.8e-10 68.2 67 47.8
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 8.8e-10 68.2 78 48.7
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 1.2e-09 67.8 79 40.5
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.2e-09 67.8 64 46.9
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 2.6e-09 66.6 72 47.2
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 3.4e-09 66.2 49 63.3
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 3.4e-09 66.2 66 48.5
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.4e-09 66.2 85 44.7
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.4e-09 66.2 85 44.7
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.4e-09 66.2 85 44.7
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 3.4e-09 66.2 64 51.6
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 5.7e-09 65.5 78 46.2
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.2e-08 63.5 100 42.0
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 4.8e-08 62.4 63 49.2
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 6.3e-08 62.0 63 49.2
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 8.3e-08 61.6 79 41.8
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.4e-07 60.8 80 42.5
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.4e-07 60.8 68 38.2
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.4e-07 60.1 62 51.6
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 3.1e-07 59.7 62 51.6
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 5.4e-07 58.9 62 51.6
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.4e-07 58.9 60 40.0
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 7.0e-07 58.5 62 51.6
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 7.0e-07 58.5 62 51.6
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 7.0e-07 58.5 62 51.6
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 7.0e-07 58.5 62 51.6
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 7.0e-07 58.5 62 51.6
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 7.0e-07 58.5 62 51.6
Nn7g38002 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.2e-06 57.8 95 40.0
Nn2g14054 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.7e-06 56.6 96 36.5
Nn2g14056 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.7e-06 56.6 96 36.5
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 4.5e-06 55.8 62 50.0
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 4.5e-06 55.8 62 50.0
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 4.5e-06 55.8 62 50.0
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 4.5e-06 55.8 62 50.0
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 4.5e-06 55.8 62 50.0
Nn2g12399 Nelumbo nucifera HOM05D003524 ORTHO05D003988 4.5e-06 55.8 43 65.1
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 5.9e-06 55.5 62 48.4
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 5.9e-06 55.5 62 48.4
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 5.9e-06 55.5 62 48.4
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 5.9e-06 55.5 62 48.4
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 7.7e-06 55.1 62 50.0
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 7.7e-06 55.1 62 48.4
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 7.7e-06 55.1 62 48.4
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 7.7e-06 55.1 42 61.9


User provided reference genes

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