Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 0.0e+00 1867.8 947 100.0
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 0.0e+00 1843.6 948 99.2
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 0.0e+00 1157.1 965 62.1
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 0.0e+00 1102.8 955 62.3
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 1.2e-271 940.3 970 55.7
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 4.5e-271 938.3 917 56.8
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 4.0e-227 792.3 1011 50.0
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 3.7e-217 759.2 983 49.1
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 6.4e-209 731.9 999 45.4
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 4.1e-200 702.6 986 46.2
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.8e-195 687.2 984 46.3
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 2.1e-191 673.7 978 44.8
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 2.4e-187 660.2 992 44.0
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 2.7e-183 646.7 965 43.2
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 6.6e-182 642.1 965 43.0
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 3.3e-181 639.8 1012 42.8
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 5.6e-181 639.0 978 43.4
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 9.0e-179 631.7 1035 42.8
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 6.7e-174 615.5 975 43.0
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 4.3e-173 612.8 911 44.6
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 7.4e-173 612.1 1012 42.4
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 1.4e-171 607.8 1035 42.3
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 2.9e-169 600.1 1023 41.7
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 2.7e-167 593.6 1007 41.8
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 1.0e-166 591.7 1023 41.3
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 1.3e-166 591.3 1014 41.3
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 1.8e-166 590.9 1014 41.7
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 2.3e-166 590.5 1013 41.1
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 3.3e-165 586.6 978 41.2
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 5.6e-165 585.9 1021 41.8
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 2.2e-161 573.9 989 40.2
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 4.9e-161 572.8 1026 39.3
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 3.2e-160 570.1 992 39.6
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 5.5e-160 569.3 984 40.8
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 9.3e-160 568.5 959 42.0
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 1.9e-157 560.8 1018 39.2
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 1.3e-156 558.1 1065 38.9
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 3.2e-152 543.5 1000 40.8
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 7.2e-152 542.3 992 39.0
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 1.6e-151 541.2 1006 39.5
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.0e-150 538.5 1000 40.9
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 5.1e-150 536.2 1014 38.9
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 8.8e-150 535.4 1012 38.9
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 5.7e-149 532.7 1017 38.6
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 9.7e-149 531.9 1013 39.8
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.3e-148 531.6 1015 40.2
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.7e-148 530.0 1018 40.0
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 1.8e-147 527.7 982 38.7
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.4e-147 527.3 1003 39.9
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 2.0e-146 524.2 999 37.6
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 3.8e-145 520.0 999 38.7
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 9.4e-144 515.4 1004 37.3
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 3.6e-143 513.5 1009 38.9
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 1.5e-138 498.0 1009 37.5
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 2.0e-138 497.7 1013 38.5
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 4.2e-136 490.0 1058 36.0
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 7.2e-136 489.2 1058 36.1
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 1.1e-133 481.9 1000 36.8
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 2.0e-133 481.1 993 36.8
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 1.3e-132 478.4 998 37.2
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 1.7e-132 478.0 982 37.0
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.8e-132 476.5 995 38.6
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.4e-131 474.9 1004 37.1
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 2.4e-131 474.2 1010 36.5
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.2e-130 471.9 895 39.3
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.7e-129 468.0 1023 36.7
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 1.5e-128 464.9 889 40.7
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 6.7e-126 456.1 993 36.2
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 4.8e-124 449.9 994 35.1
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 8.3e-124 449.1 987 35.2
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 8.3e-124 449.1 995 35.1
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 1.8e-123 448.0 999 35.7
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.8e-123 448.0 777 41.2
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 8.5e-121 439.1 995 35.8
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 3.2e-120 437.2 992 35.5
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 4.7e-119 433.3 886 38.4
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 8.8e-118 429.1 995 35.5
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 2.6e-117 427.6 1001 34.8
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 2.6e-117 427.6 981 36.9
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 4.8e-116 423.3 965 35.2
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 8.3e-116 422.5 772 39.5
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 2.4e-115 421.0 1008 34.9
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 7.0e-115 419.5 818 39.5
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 2.7e-114 417.5 1007 34.6
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 7.7e-114 416.0 992 33.9
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 8.6e-113 412.5 994 33.6
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 1.6e-111 408.3 994 33.6
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 2.1e-111 407.9 1013 34.7
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 6.8e-110 402.9 994 33.3
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 2.0e-109 401.4 990 34.1
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 3.4e-109 400.6 989 33.6
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 8.3e-108 396.0 994 33.2
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 8.3e-108 396.0 994 33.2
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 3.4e-101 374.0 874 35.1
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.1e-99 369.0 959 33.4
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 4.1e-99 367.1 476 47.5
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 8.0e-95 352.8 581 43.2
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 4.9e-92 343.6 984 31.3
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.4e-91 342.0 631 38.2
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 9.2e-91 339.3 1003 31.5
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 4.4e-85 320.5 894 32.8
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 7.5e-85 319.7 440 48.2
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 3.2e-83 314.3 879 31.3
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 1.7e-81 308.5 1013 29.9
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 3.9e-81 307.4 660 38.2
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.1e-78 299.3 457 45.1
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.3e-73 281.6 372 47.3
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 5.8e-69 266.9 1086 25.9
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 2.4e-62 245.0 344 44.5
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 2.1e-58 231.9 920 28.4
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 6.2e-55 220.3 603 30.3
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 8.1e-55 219.9 960 27.2
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 4.0e-54 217.6 248 54.4
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 9.0e-54 216.5 291 46.0
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 7.1e-51 206.8 387 40.8
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 1.3e-49 202.6 406 38.9
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 1.6e-42 179.1 308 39.0
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 8.7e-41 173.3 248 48.4
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 7.2e-27 127.1 140 56.4
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 2.7e-26 125.2 361 31.9
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 8.8e-25 120.2 509 28.9
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 6.5e-20 104.0 960 20.9
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 3.5e-13 81.6 158 39.2
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 2.2e-12 79.0 84 53.6
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 1.5e-11 76.3 187 32.6
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 6.1e-10 70.9 275 28.7
Actinidia30732 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.4e-09 69.7 164 34.8
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 1.3e-07 63.2 70 47.1
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 1.7e-07 62.8 230 25.2
AagrBONN_evm.TU.Sc2ySwM_117.1094 Anthoceros agrestis HOM05D005720 ORTHO05D006984 6.3e-07 60.8 351 23.9
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.4e-06 58.9 137 35.0


User provided reference genes

Program Settings