Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 0.0e+00 1461.8 997 100.0
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.5e-264 916.8 947 78.7
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 4.8e-247 858.6 995 69.2
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 9.0e-246 854.4 1004 69.0
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 6.7e-233 811.6 997 65.5
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 2.6e-229 799.7 990 67.7
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 4.9e-228 795.4 955 70.5
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 3.2e-227 792.7 994 67.9
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 5.5e-227 792.0 954 70.6
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 7.9e-226 788.1 991 67.0
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 1.1e-222 777.7 1009 66.9
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 3.1e-222 776.2 1033 66.2
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 2.0e-221 773.5 822 73.8
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 1.4e-219 767.3 885 70.7
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 2.2e-215 753.4 956 70.5
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 7.7e-213 745.0 917 63.2
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.7e-212 743.8 1028 65.4
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 2.7e-210 736.5 1005 63.3
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.4e-209 734.2 946 68.1
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 1.7e-207 727.2 888 72.7
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 4.1e-206 722.6 800 77.6
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 2.5e-203 713.4 885 66.9
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 3.6e-202 709.5 1017 62.8
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 1.8e-201 707.2 965 65.2
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 3.0e-201 706.4 871 66.0
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.1e-200 704.5 885 65.8
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.7e-199 700.7 905 67.5
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 8.2e-199 698.4 921 58.5
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.4e-198 697.6 988 64.7
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 4.1e-198 696.0 948 65.9
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 8.5e-196 688.3 992 64.4
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.9e-195 687.2 882 66.1
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 4.2e-195 686.0 1031 59.2
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 7.2e-195 685.3 892 61.7
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.0e-193 679.5 811 73.7
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.2e-193 679.1 811 73.7
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 6.7e-193 678.7 925 58.4
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 6.7e-193 678.7 888 68.0
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 2.6e-192 676.8 1024 63.0
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 4.4e-192 676.0 884 63.0
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 9.7e-192 674.9 845 68.6
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 8.2e-191 671.8 1011 62.0
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 8.2e-191 671.8 951 65.6
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 2.4e-190 670.2 869 68.4
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 5.3e-190 669.1 817 71.2
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.2e-189 667.9 888 69.0
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 7.7e-189 665.2 850 62.4
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.5e-188 662.1 916 64.7
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 4.2e-187 659.4 865 69.0
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 4.7e-186 656.0 901 65.8
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.0e-185 654.8 881 65.2
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.8e-185 654.1 881 68.8
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 3.0e-185 653.3 790 73.2
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 5.2e-185 652.5 884 62.2
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 6.8e-185 652.1 884 68.6
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 6.8e-185 652.1 793 71.2
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 8.8e-185 651.7 884 68.6
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 2.6e-184 650.2 802 71.2
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 2.6e-184 650.2 815 73.1
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 4.4e-184 649.4 889 66.8
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 5.7e-184 649.0 788 70.9
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 5.7e-184 649.0 790 70.9
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 8.3e-183 645.2 816 69.2
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.1e-182 644.8 795 72.2
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 1.4e-182 644.4 816 67.9
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 4.1e-182 642.9 962 61.1
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 2.9e-180 636.7 1030 60.1
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 2.5e-179 633.6 873 65.3
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 4.2e-179 632.9 800 70.8
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 1.2e-178 631.3 1007 54.1
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.2e-178 631.3 791 72.3
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 1.2e-178 631.3 1096 52.1
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 8.0e-178 628.6 823 70.0
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.4e-177 627.9 879 66.7
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 5.2e-177 625.9 816 69.2
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.0e-176 624.0 972 62.2
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.7e-175 620.9 792 68.8
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.2e-175 620.5 1024 60.9
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.8e-175 620.2 880 65.1
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 6.3e-175 619.0 851 68.3
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.4e-174 617.1 870 65.1
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 3.1e-174 616.7 1010 59.4
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.1e-174 616.7 870 65.1
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 7.0e-174 615.5 804 68.4
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 9.2e-174 615.1 857 67.7
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 7.7e-173 612.1 906 64.0
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 1.5e-171 607.8 792 70.3
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 4.3e-171 606.3 1019 54.6
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 5.6e-171 605.9 829 63.3
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 2.8e-170 603.6 868 66.7
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 3.6e-170 603.2 751 68.7
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 3.6e-170 603.2 786 64.4
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 4.7e-170 602.8 870 64.1
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 2.0e-168 597.4 884 63.3
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 9.8e-168 595.1 794 68.8
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 9.8e-168 595.1 795 68.9
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 3.7e-167 593.2 823 68.8
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 6.4e-167 592.4 938 62.0
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 1.8e-166 590.9 866 56.1
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 3.0e-164 583.6 885 62.5
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 2.5e-163 580.5 870 63.0
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.3e-163 580.1 945 59.9
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 9.5e-163 578.6 901 62.2
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 1.2e-162 578.2 884 63.3
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 1.2e-162 578.2 884 63.3
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.4e-161 574.7 733 61.7
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 4.0e-161 573.2 813 65.7
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 4.4e-160 569.7 963 55.1
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.7e-159 567.8 898 61.2
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 3.2e-158 563.5 1014 54.3
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 5.4e-158 562.8 856 59.7
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 5.0e-156 556.2 889 61.6
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 6.6e-156 555.8 890 61.6
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.9e-155 554.3 790 66.7
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 3.3e-155 553.5 782 66.9
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 5.6e-155 552.7 857 57.6
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 7.3e-155 552.4 890 61.7
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 2.8e-154 550.4 885 61.0
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 2.3e-153 547.4 886 58.4
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 2.9e-151 540.4 903 60.1
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.4e-150 538.1 877 60.0
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 2.4e-150 537.3 901 60.6
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 2.4e-150 537.3 857 55.9
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 2.4e-150 537.3 857 55.9
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 8.6e-148 528.9 872 55.7
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.6e-146 524.6 891 59.4
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 2.1e-146 524.2 807 59.0
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 2.1e-146 524.2 960 57.5
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.2e-144 518.5 780 61.3
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.2e-143 514.2 789 51.6
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 3.8e-143 513.5 780 61.4
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 1.1e-142 511.9 706 65.9
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.1e-142 511.9 876 55.3
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 3.2e-142 510.4 726 59.6
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.1e-139 501.9 803 62.3
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.5e-139 500.7 813 62.6
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 3.3e-139 500.4 860 55.6
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 4.3e-139 500.0 715 64.3
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 8.1e-138 495.7 835 52.6
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 2.7e-133 480.7 726 58.3
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 5.1e-132 476.5 982 37.4
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 2.9e-127 460.7 563 68.6
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 8.4e-127 459.1 652 62.7
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 3.4e-120 437.2 929 51.2
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 4.5e-120 436.8 661 71.0
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 8.4e-119 432.6 954 45.8
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.7e-117 427.6 897 49.6
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.0e-116 425.6 607 64.3
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.3e-115 420.6 624 77.6
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.9e-110 404.8 887 48.9
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 9.3e-110 402.5 665 59.5
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 8.5e-103 379.4 828 54.3
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.6e-101 375.2 329 72.3
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 2.3e-100 371.3 709 53.3
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.7e-95 355.1 619 71.6
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 2.0e-91 341.7 482 51.5
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 2.6e-88 331.3 470 51.9
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 2.0e-83 315.1 622 61.6
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 7.7e-80 303.1 640 53.4
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.0e-79 302.8 667 50.2
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 5.2e-76 290.4 303 86.5
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 2.0e-72 278.5 608 58.1
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 2.9e-71 274.6 1282 29.0
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 4.1e-65 254.2 247 67.2
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.0e-60 239.6 157 75.8
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 8.3e-58 229.9 346 43.9
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 2.0e-43 182.2 203 52.7
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.6e-32 146.0 186 48.9
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 4.7e-29 134.4 88 79.5
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.3e-26 126.3 80 73.8
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 4.6e-24 117.9 119 53.8
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 6.2e-21 107.5 85 63.5
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.7e-18 99.4 66 78.8
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 3.0e-15 88.6 136 75.0
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.4e-09 69.7 63 52.4
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.3e-07 62.4 164 29.3
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 5.1e-07 61.2 219 26.9


User provided reference genes

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