Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 9.3e-95 350.1 169 100.0
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.8e-93 345.9 169 98.8
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.7e-51 206.5 141 71.6
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 6.3e-51 204.5 141 70.9
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.8e-37 159.8 165 51.5
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.8e-37 159.8 165 51.5
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 7.3e-23 111.3 175 40.0
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.8e-21 106.7 185 38.4
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.8e-21 106.7 177 40.7
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 2.3e-21 106.3 125 48.0
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 1.2e-20 104.0 163 38.7
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 1.7e-19 100.1 142 43.7
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.4e-18 96.3 133 41.4
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 3.2e-18 95.9 150 38.0
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 4.1e-18 95.5 142 42.3
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 9.2e-18 94.4 141 38.3
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.2e-17 94.0 145 40.7
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 4.6e-17 92.0 151 39.1
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 6.0e-17 91.7 133 41.4
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 6.0e-17 91.7 129 41.1
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 7.8e-17 91.3 135 40.0
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 7.8e-17 91.3 166 33.7
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 7.8e-17 91.3 168 36.9
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 1.7e-16 90.1 121 38.8
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 3.0e-16 89.4 72 55.6
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 3.9e-16 89.0 148 38.5
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 3.9e-16 89.0 146 37.0
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 3.9e-16 89.0 153 38.6
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 3.9e-16 89.0 107 45.8
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 3.9e-16 89.0 130 38.5
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 3.9e-16 89.0 155 41.3
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 6.6e-16 88.2 137 39.4
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 8.6e-16 87.8 121 40.5
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 8.6e-16 87.8 140 39.3
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 8.6e-16 87.8 140 38.6
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.1e-15 87.4 138 40.6
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 1.1e-15 87.4 157 37.6
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.5e-15 87.0 122 41.0
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 1.5e-15 87.0 121 41.3
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 1.9e-15 86.7 155 36.1
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 1.9e-15 86.7 71 59.2
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 2.5e-15 86.3 131 38.9
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.3e-15 85.9 139 40.3
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 3.3e-15 85.9 184 31.5
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.3e-15 85.9 140 38.6
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 4.3e-15 85.5 170 34.7
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 4.3e-15 85.5 159 34.6
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 5.6e-15 85.1 172 33.7
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 5.6e-15 85.1 172 33.7
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 5.6e-15 85.1 130 38.5
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 7.3e-15 84.7 129 40.3
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 7.3e-15 84.7 133 39.8
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 9.5e-15 84.3 153 36.6
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 9.5e-15 84.3 122 40.2
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 1.2e-14 84.0 127 40.9
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 1.2e-14 84.0 169 33.1
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.2e-14 84.0 105 43.8
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 1.6e-14 83.6 146 32.9
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 3.6e-14 82.4 110 42.7
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 4.7e-14 82.0 120 34.2
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 4.7e-14 82.0 145 36.6
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 6.2e-14 81.6 135 37.8
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 8.1e-14 81.3 115 42.6
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 8.1e-14 81.3 129 38.8
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 8.1e-14 81.3 129 38.8
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.1e-13 80.9 128 42.2
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 1.1e-13 80.9 128 38.3
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 1.1e-13 80.9 126 35.7
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.1e-13 80.9 129 39.5
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.1e-13 80.9 129 39.5
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 1.4e-13 80.5 136 36.8
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 1.4e-13 80.5 114 40.4
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.4e-13 80.5 114 40.4
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.4e-13 80.5 102 40.2
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 1.8e-13 80.1 169 32.0
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 3.1e-13 79.3 133 39.1
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 3.1e-13 79.3 107 41.1
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 3.1e-13 79.3 112 42.0
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 4.0e-13 79.0 111 40.5
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 4.0e-13 79.0 114 40.4
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 5.2e-13 78.6 139 33.1
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 5.2e-13 78.6 173 34.7
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 6.8e-13 78.2 137 37.2
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 6.8e-13 78.2 155 36.1
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.2e-12 77.4 133 31.6
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 1.2e-12 77.4 123 36.6
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 1.5e-12 77.0 108 41.7
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.5e-12 77.0 127 33.1
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.5e-12 77.0 124 36.3
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.5e-12 77.0 141 33.3
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.5e-12 77.0 141 33.3
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.5e-12 77.0 139 36.0
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 2.0e-12 76.6 120 37.5
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.6e-12 76.3 97 39.2
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 3.4e-12 75.9 131 38.2
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 5.8e-12 75.1 89 40.4
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 9.9e-12 74.3 108 39.8
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 9.9e-12 74.3 75 49.3
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.3e-11 73.9 126 31.7
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 1.3e-11 73.9 135 37.0
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 2.2e-11 73.2 125 35.2
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 2.2e-11 73.2 71 50.7
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 2.9e-11 72.8 113 35.4
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 2.9e-11 72.8 168 32.7
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 3.7e-11 72.4 118 38.1
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.9e-11 72.0 125 34.4
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 6.4e-11 71.6 131 34.4
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 6.4e-11 71.6 119 34.5
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 8.3e-11 71.2 116 35.3
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 1.1e-10 70.9 124 41.9
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 1.4e-10 70.5 122 35.2
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 1.9e-10 70.1 138 36.2
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 1.9e-10 70.1 96 39.6
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 2.4e-10 69.7 139 34.5
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 3.2e-10 69.3 113 37.2
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 4.1e-10 68.9 81 43.2
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 4.1e-10 68.9 115 39.1
SalBow6G3582 Salvia bowleyana HOM05D000462 ORTHO05D005846 5.4e-10 68.6 101 32.7
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 1.2e-09 67.4 131 35.1
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 2.1e-09 66.6 110 33.6
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 2.7e-09 66.2 87 43.7
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.6e-09 65.5 90 41.1
Medtr8g103940 Medicago truncatula HOM05D000395 ORTHO05D000088 7.8e-09 64.7 182 25.8
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 7.8e-09 64.7 103 39.8
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.3e-08 63.9 67 41.8
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 2.3e-08 63.2 105 40.0
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 5.1e-08 62.0 124 33.1
SEGI_23984 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 5.1e-08 62.0 102 38.2
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.1e-07 60.8 105 35.2
Lj2g0019967 Lotus japonicus HOM05D000395 ORTHO05D000088 1.5e-07 60.5 157 29.3
SalBow6G0867 Salvia bowleyana HOM05D034604 ORTHO05D005846 1.9e-07 60.1 36 77.8
SalBow6G3696 Salvia bowleyana HOM05D034604 ORTHO05D005846 1.9e-07 60.1 35 80.0
Gohir.A12G067300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.3e-07 59.3 131 32.1
PSO339G0204 Papaver somniferum HOM05D000395 ORTHO05D000088 3.3e-07 59.3 109 33.9
COL.COLO4_26809 Corchorus olitorius HOM05D000395 ORTHO05D000088 4.3e-07 58.9 101 32.7
Lj2g0006674 Lotus japonicus HOM05D000395 ORTHO05D000088 4.3e-07 58.9 132 27.3
Gorai.008G071200 Gossypium raimondii HOM05D000395 ORTHO05D000088 7.3e-07 58.2 131 32.1
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 9.5e-07 57.8 66 39.4
Gohir.D12G067800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 9.5e-07 57.8 131 32.1
QL11p039132 Quercus lobata HOM05D000823 ORTHO05D000088 1.2e-06 57.4 87 36.8
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 1.6e-06 57.0 99 32.3
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 2.1e-06 56.6 121 32.2
Eucgr.H02901 Eucalyptus grandis HOM05D000395 ORTHO05D000088 3.6e-06 55.8 107 39.3
PSO063G3506 Papaver somniferum HOM05D000823 ORTHO05D000088 4.7e-06 55.5 107 35.5
SEGI_28063 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 4.7e-06 55.5 72 40.3
SGA_v2.0_scaffold204G41627 Striga asiatica HOM05D000395 ORTHO05D000088 6.2e-06 55.1 125 30.4
Gohir.D12G067900 Gossypium hirsutum HOM05D000395 ORTHO05D000088 8.1e-06 54.7 87 37.9
Gorai.008G071300 Gossypium raimondii HOM05D000395 ORTHO05D000088 8.1e-06 54.7 87 37.9
Lj1g0013794 Lotus japonicus HOM05D000395 ORTHO05D000088 8.1e-06 54.7 161 30.4
PSO384G0211 Papaver somniferum HOM05D000395 ORTHO05D000088 8.1e-06 54.7 71 36.6
PSO384G3645 Papaver somniferum HOM05D000395 ORTHO05D000088 8.1e-06 54.7 90 31.1
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 8.1e-06 54.7 75 33.3


User provided reference genes

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