Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 7.3e-174 614.0 355 100.0
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 3.2e-52 209.9 397 37.5
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 1.0e-50 204.9 385 38.2
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 6.8e-39 165.6 360 37.8
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 3.7e-37 159.8 383 35.0
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 1.1e-33 148.3 374 32.4
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 4.3e-33 146.4 384 32.3
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 6.8e-31 139.0 358 33.2
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 8.9e-31 138.7 384 32.6
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 2.0e-30 137.5 368 34.8
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 7.6e-30 135.6 366 31.1
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 7.6e-30 135.6 366 31.1
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.3e-26 124.0 410 29.8
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 1.1e-25 121.7 397 28.2
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 5.6e-25 119.4 375 28.8
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 1.4e-23 114.8 372 30.4
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 4.0e-23 113.2 394 27.7
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 6.9e-23 112.5 374 28.1
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.5e-22 111.3 375 30.4
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 1.5e-22 111.3 407 27.8
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 2.6e-22 110.5 398 26.9
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 2.2e-21 107.5 369 29.3
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 2.9e-21 107.1 369 29.0
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 2.9e-21 107.1 134 48.5
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 3.8e-21 106.7 161 44.1
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.1e-20 105.1 118 50.8
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 3.2e-20 103.6 392 27.6
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 4.2e-20 103.2 360 33.9
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 9.3e-20 102.1 132 43.9
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 9.3e-20 102.1 362 28.5
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 1.6e-19 101.3 421 28.7
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.1e-19 100.9 356 30.3
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 7.9e-19 99.0 401 27.2
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.0e-18 98.6 126 46.8
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.3e-18 98.2 373 27.9
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 1.3e-18 98.2 142 43.7
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 2.3e-18 97.4 397 26.2
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 3.0e-18 97.1 376 28.7
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 3.9e-18 96.7 370 33.2
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 5.1e-18 96.3 116 47.4
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 6.6e-18 95.9 177 39.0
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 8.7e-18 95.5 130 42.3
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 1.9e-17 94.4 393 26.2
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 2.5e-17 94.0 389 27.0
AUR62030799 Chenopodium quinoa HOM05D029928 ORTHO05D003520 7.3e-17 92.4 162 37.0
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 7.3e-17 92.4 150 37.3
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 9.6e-17 92.0 133 42.9
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.1e-16 90.9 375 26.1
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 3.6e-16 90.1 361 26.6
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 6.2e-16 89.4 140 43.6
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 1.1e-15 88.6 136 40.4
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.1e-15 88.6 407 29.0
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 1.8e-15 87.8 169 38.5
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.8e-15 87.8 131 38.9
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 3.1e-15 87.0 407 23.6
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 3.1e-15 87.0 423 26.0
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 4.0e-15 86.7 176 36.9
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 5.3e-15 86.3 173 35.8
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 5.3e-15 86.3 376 25.8
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 9.0e-15 85.5 408 29.7
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 9.0e-15 85.5 155 40.0
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 9.0e-15 85.5 112 43.8
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 9.0e-15 85.5 162 36.4
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 9.0e-15 85.5 160 38.8
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 9.0e-15 85.5 119 43.7
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.2e-14 85.1 136 39.0
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.2e-14 85.1 112 43.8
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 1.5e-14 84.7 374 25.1
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 2.0e-14 84.3 164 35.4
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.6e-14 84.0 367 25.3
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 4.5e-14 83.2 395 26.8
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.5e-14 83.2 407 23.8
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 9.9e-14 82.0 413 24.5
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 1.7e-13 81.3 129 41.9
Sc07g0006660 Simmondsia chinensis HOM05D003726 ORTHO05D003520 2.2e-13 80.9 383 25.8
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.9e-13 80.5 129 44.2
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 6.4e-13 79.3 152 35.5
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 8.4e-13 79.0 369 26.6
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 1.1e-12 78.6 181 32.6
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 1.9e-12 77.8 163 36.8
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 1.9e-12 77.8 164 35.4
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 2.4e-12 77.4 112 40.2
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 2.4e-12 77.4 168 33.9
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 2.4e-12 77.4 114 41.2
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 3.2e-12 77.0 391 26.1
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 4.2e-12 76.6 132 38.6
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 5.5e-12 76.3 189 32.8
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 7.1e-12 75.9 160 36.9
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 9.3e-12 75.5 145 33.8
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 9.3e-12 75.5 132 38.6
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 9.3e-12 75.5 132 38.6
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 9.3e-12 75.5 133 36.1
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 1.2e-11 75.1 133 36.8
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 1.6e-11 74.7 193 32.1
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 1.6e-11 74.7 176 34.7
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 1.6e-11 74.7 358 25.1
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 1.6e-11 74.7 136 36.8
Psat7g245680 Pisum sativum HOM05D003726 ORTHO05D003520 2.1e-11 74.3 161 34.2
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 2.1e-11 74.3 141 39.0
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 2.1e-11 74.3 350 24.3
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 2.7e-11 73.9 110 44.5
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 3.5e-11 73.6 383 24.8
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 3.5e-11 73.6 165 33.9
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 4.6e-11 73.2 110 43.6
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 6.0e-11 72.8 373 26.8
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 7.9e-11 72.4 154 35.7
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 1.0e-10 72.0 110 40.9
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.3e-10 71.6 160 35.0
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 1.8e-10 71.2 119 44.5
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 1.8e-10 71.2 178 32.0
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 1.8e-10 71.2 179 31.3
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 2.3e-10 70.9 166 34.3
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 2.3e-10 70.9 162 34.0
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.3e-10 70.9 157 34.4
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 3.9e-10 70.1 146 34.2
BolC2t06018H Brassica oleracea HOM05D013727 ORTHO05D003520 3.9e-10 70.1 141 37.6
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 3.9e-10 70.1 160 36.9
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 3.9e-10 70.1 122 38.5
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.1e-10 69.7 157 33.8
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 5.1e-10 69.7 147 31.3
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 6.7e-10 69.3 115 36.5
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 6.7e-10 69.3 157 34.4
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 6.7e-10 69.3 170 33.5
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 8.7e-10 68.9 372 25.0
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 8.7e-10 68.9 365 25.2
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 1.5e-09 68.2 367 29.7
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 1.5e-09 68.2 129 36.4
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 1.5e-09 68.2 112 41.1
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 1.5e-09 68.2 140 32.1
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 1.9e-09 67.8 118 38.1
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 1.9e-09 67.8 118 38.1
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.9e-09 67.8 163 31.3
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.9e-09 67.8 368 25.3
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 1.9e-09 67.8 179 31.8
Hund11000 Selenicereus undatus HOM05D046068 ORTHO05D003520 1.9e-09 67.8 137 34.3
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 2.5e-09 67.4 125 35.2
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 2.5e-09 67.4 112 38.4
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.3e-09 67.0 363 29.8
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 3.3e-09 67.0 370 24.6
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 4.3e-09 66.6 118 35.6
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 4.3e-09 66.6 363 29.8
Hund29902 Selenicereus undatus HOM05D046068 ORTHO05D003520 9.6e-09 65.5 134 35.8
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 9.6e-09 65.5 120 35.8
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 1.3e-08 65.1 110 39.1
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 1.6e-08 64.7 118 36.4
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.1e-08 64.3 391 24.3
Glyma.01G120800 Glycine max HOM05D003726 ORTHO05D003520 2.1e-08 64.3 113 42.5
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 2.1e-08 64.3 110 37.3
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 2.1e-08 64.3 123 35.8
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 2.8e-08 63.9 113 34.5
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 4.8e-08 63.2 109 39.4
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 4.8e-08 63.2 164 33.5
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 6.2e-08 62.8 115 39.1
THA.LOC104816197 Tarenaya hassleriana HOM05D013727 ORTHO05D003520 8.1e-08 62.4 418 22.0
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 1.1e-07 62.0 112 41.1
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 1.1e-07 62.0 112 41.1
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.8e-07 61.2 343 24.8
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 1.8e-07 61.2 162 31.5
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 1.8e-07 61.2 148 31.1
Aa31LG1G23030 Aethionema arabicum HOM05D013727 ORTHO05D003520 2.4e-07 60.8 407 26.3
CSS0029870 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.1e-07 60.5 343 24.8
arahy.Tifrunner.gnm1.ann1.W084UE Arachis hypogaea HOM05D003726 ORTHO05D003520 5.3e-07 59.7 156 33.3
BraA02t04692Z Brassica rapa HOM05D013727 ORTHO05D003520 5.3e-07 59.7 142 34.5
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 6.9e-07 59.3 117 40.2
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 6.9e-07 59.3 157 29.9
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 6.9e-07 59.3 121 34.7
arahy.Tifrunner.gnm1.ann1.142K7L Arachis hypogaea HOM05D003726 ORTHO05D003520 1.2e-06 58.5 156 32.7
arahy.Tifrunner.gnm1.ann1.71KX3G Arachis hypogaea HOM05D003726 ORTHO05D003520 1.2e-06 58.5 156 33.3
Carub.0006s0045 Capsella rubella HOM05D013727 ORTHO05D003520 1.2e-06 58.5 143 33.6
CARHR211750 Cardamine hirsuta HOM05D013727 ORTHO05D003520 1.5e-06 58.2 150 33.3
Thhalv10016075m.g Eutrema salsugineum HOM05D013727 ORTHO05D003520 2.0e-06 57.8 148 33.1
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 2.6e-06 57.4 110 38.2
AT5G01370 Arabidopsis thaliana HOM05D013727 ORTHO05D003520 3.4e-06 57.0 148 35.1
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 7.6e-06 55.8 65 46.2
Sp6g40680 Schrenkiella parvula HOM05D013727 ORTHO05D003520 1.0e-05 55.5 149 33.6


User provided reference genes

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