Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2409 Salvia bowleyana HOM05D002958 ORTHO05D356345 1.5e-60 236.5 166 100.0
SalBow7G2893 Salvia bowleyana HOM05D002958 ORTHO05D003558 1.0e-13 80.9 43 83.7
Lj3g0001420 Lotus japonicus HOM05D002958 ORTHO05D003558 9.7e-12 74.3 51 64.7
Potri.001G399000 Populus trichocarpa HOM05D002958 ORTHO05D003558 3.1e-10 69.3 47 59.6
Thecc.02G181900 Theobroma cacao HOM05D002958 ORTHO05D003558 3.1e-10 69.3 52 57.7
TAR627G0954 Trochodendron aralioides HOM05D002958 ORTHO05D003558 3.1e-10 69.3 46 63.0
Cc05_g11940 Coffea canephora HOM05D002958 ORTHO05D003558 4.1e-10 68.9 31 90.3
Aqoxy167s001 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 6.9e-10 68.2 46 65.2
Aqoxy4G00995 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 6.9e-10 68.2 46 65.2
Aqoxy7G02353 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 6.9e-10 68.2 46 65.2
Aqoxy7G03109 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 6.9e-10 68.2 46 65.2
Glyma.06G240100 Glycine max HOM05D002958 ORTHO05D003558 6.9e-10 68.2 44 75.0
Nitab4.5_0001241g0080 Nicotiana tabacum HOM05D002958 ORTHO05D003558 9.1e-10 67.8 32 84.4
Nitab4.5_0001336g0100 Nicotiana tabacum HOM05D002958 ORTHO05D003558 9.1e-10 67.8 32 84.4
SGA_v2.0_scaffold73G24254 Striga asiatica HOM05D002958 ORTHO05D003558 9.1e-10 67.8 46 69.6
Ciclev10007808m.g Citrus clementina HOM05D002958 ORTHO05D003558 1.2e-09 67.4 55 58.2
Sabra11G0103200 Salix brachista HOM05D002958 ORTHO05D003558 1.2e-09 67.4 32 81.2
Aqoxy4G00736 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 1.5e-09 67.0 46 63.0
CAN.G162.50 Capsicum annuum HOM05D002958 ORTHO05D003558 1.5e-09 67.0 55 54.5
Hma1.2p1_0458F.1_g157030 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 1.5e-09 67.0 47 59.6
Oeu024907.2 Olea europaea HOM05D002958 ORTHO05D003558 1.5e-09 67.0 31 87.1
Actinidia35245 Actinidia chinensis HOM05D002958 ORTHO05D003558 2.0e-09 66.6 44 63.6
CiPaw.12G119100 Carya illinoinensis HOM05D002958 ORTHO05D003558 2.0e-09 66.6 34 82.4
Nn8g39708 Nelumbo nucifera HOM05D002958 ORTHO05D003558 2.0e-09 66.6 31 87.1
CSS0016776 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 2.6e-09 66.2 30 90.0
CSS0042025 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 2.6e-09 66.2 30 90.0
Cfa020573 Carpinus fangiana HOM05D002958 ORTHO05D003558 2.6e-09 66.2 30 90.0
CiPaw.11G170500 Carya illinoinensis HOM05D002958 ORTHO05D003558 2.6e-09 66.2 32 84.4
Haze_09438 Corylus avellana HOM05D002958 ORTHO05D003558 2.6e-09 66.2 30 90.0
FAN16G0300 Fragaria x ananassa HOM05D002958 ORTHO05D003558 2.6e-09 66.2 41 70.7
FAN21G2785 Fragaria x ananassa HOM05D002958 ORTHO05D003558 2.6e-09 66.2 41 70.7
FAN25G2067 Fragaria x ananassa HOM05D002958 ORTHO05D003558 2.6e-09 66.2 41 70.7
Medtr2g079110 Medicago truncatula HOM05D002958 ORTHO05D003558 2.6e-09 66.2 47 66.0
Rhsim04G0021800 Rhododendron simsii HOM05D002958 ORTHO05D003558 2.6e-09 66.2 30 90.0
COL.COLO4_36342 Corchorus olitorius HOM05D002958 ORTHO05D003558 3.4e-09 65.9 45 64.4
Glyma.12G225300 Glycine max HOM05D002958 ORTHO05D003558 3.4e-09 65.9 47 66.0
Glyma.13G276000 Glycine max HOM05D002958 ORTHO05D003558 3.4e-09 65.9 47 66.0
Manes.03G109300 Manihot esculenta HOM05D002958 ORTHO05D003558 3.4e-09 65.9 34 79.4
Manes.15G087800 Manihot esculenta HOM05D002958 ORTHO05D003558 3.4e-09 65.9 36 75.0
PSO541G2422 Papaver somniferum HOM05D002958 ORTHO05D003558 3.4e-09 65.9 51 58.8
Phvul.005G072900 Phaseolus vulgaris HOM05D002958 ORTHO05D003558 3.4e-09 65.9 46 60.9
QL08p039561 Quercus lobata HOM05D002958 ORTHO05D003558 3.4e-09 65.9 45 64.4
RcHm_v2.0_Chr5g0033201 Rosa chinensis HOM05D002958 ORTHO05D003558 3.4e-09 65.9 31 87.1
TAR627G0778 Trochodendron aralioides HOM05D002958 ORTHO05D003558 3.4e-09 65.9 46 60.9
VMungo1080G0249 Vigna mungo HOM05D002958 ORTHO05D003558 3.4e-09 65.9 47 66.0
GSVIVG01020566001 Vitis vinifera HOM05D002958 ORTHO05D003558 3.4e-09 65.9 30 90.0
Sabra16G0261600 Salix brachista HOM05D002958 ORTHO05D003558 4.5e-09 65.5 32 81.2
vmacro09527 Vaccinium macrocarpon HOM05D002958 ORTHO05D003558 4.5e-09 65.5 30 86.7
COL.COLO4_27183 Corchorus olitorius HOM05D002958 ORTHO05D003558 5.9e-09 65.1 30 86.7
FvH4_3g19790 Fragaria vesca HOM05D002958 ORTHO05D003558 5.9e-09 65.1 31 83.9
FAN11G0087 Fragaria x ananassa HOM05D002958 ORTHO05D003558 5.9e-09 65.1 31 83.9
Nitab4.5_0002383g0020 Nicotiana tabacum HOM05D002958 ORTHO05D003558 5.9e-09 65.1 32 81.2
SalBow3G0650 Salvia bowleyana HOM05D002958 ORTHO05D354860 5.9e-09 65.1 36 91.7
Atru.chr2.2483 Acer truncatum HOM05D002958 ORTHO05D003558 7.7e-09 64.7 32 81.2
Actinidia18769 Actinidia chinensis HOM05D002958 ORTHO05D003558 7.7e-09 64.7 30 83.3
Gohir.A13G146200 Gossypium hirsutum HOM05D002958 ORTHO05D003558 7.7e-09 64.7 32 84.4
Gohir.D13G152056 Gossypium hirsutum HOM05D002958 ORTHO05D003558 7.7e-09 64.7 32 84.4
Gorai.013G169100 Gossypium raimondii HOM05D002958 ORTHO05D003558 7.7e-09 64.7 32 84.4
PSO675G8275 Papaver somniferum HOM05D002958 ORTHO05D003558 7.7e-09 64.7 51 56.9
Solyc07g063040.3 Solanum lycopersicum HOM05D002958 ORTHO05D003558 7.7e-09 64.7 42 64.3
Sopen07g031230 Solanum pennellii HOM05D002958 ORTHO05D003558 7.7e-09 64.7 42 64.3
Ca_03507_v3 Cicer arietinum L. HOM05D002958 ORTHO05D003558 1.0e-08 64.3 30 83.3
Gohir.A01G063000 Gossypium hirsutum HOM05D002958 ORTHO05D003558 1.0e-08 64.3 30 86.7
Gorai.002G069300 Gossypium raimondii HOM05D002958 ORTHO05D003558 1.0e-08 64.3 30 86.7
Lsat_1_v5_gn_7_104120 Lactuca sativa HOM05D002958 ORTHO05D003558 1.0e-08 64.3 45 60.0
MBI07_g30198_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 1.0e-08 64.3 32 78.1
Psat5g242200 Pisum sativum HOM05D002958 ORTHO05D003558 1.0e-08 64.3 30 83.3
TAR624G0879 Trochodendron aralioides HOM05D002958 ORTHO05D003558 1.0e-08 64.3 31 80.6
arahy.Tifrunner.gnm1.ann1.VQ4NRX Arachis hypogaea HOM05D002958 ORTHO05D003558 1.3e-08 63.9 45 68.9
ClCG11G018020 Citrullus lanatus HOM05D002958 ORTHO05D003558 1.3e-08 63.9 30 86.7
MELO3C016693.2 Cucumis melo HOM05D002958 ORTHO05D003558 1.3e-08 63.9 30 86.7
CsaV3_4G033640 Cucumis sativus L. HOM05D002958 ORTHO05D003558 1.3e-08 63.9 30 86.7
Peaxi162Scf00027g00211 Petunia axillaris HOM05D002958 ORTHO05D003558 1.3e-08 63.9 31 80.6
Sed0013988 Sechium edule HOM05D002958 ORTHO05D003558 1.3e-08 63.9 32 81.2
TPR.G7973 Trifolium pratense HOM05D002958 ORTHO05D003558 1.3e-08 63.9 30 83.3
Eucgr.F03307 Eucalyptus grandis HOM05D002958 ORTHO05D003558 1.7e-08 63.5 32 75.0
Hma1.2p1_0002F.1_g002040 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 1.7e-08 63.5 47 61.7
Lalb_Chr01g0016791 Lupinus albus HOM05D002958 ORTHO05D003558 1.7e-08 63.5 30 83.3
Nitab4.5_0000207g0070 Nicotiana tabacum HOM05D002958 ORTHO05D003558 1.7e-08 63.5 32 78.1
GSVIVG01014315001 Vitis vinifera HOM05D002958 ORTHO05D003558 2.2e-08 63.2 30 86.7
AUR62039195 Chenopodium quinoa HOM05D002958 ORTHO05D003558 2.9e-08 62.8 33 78.8
Duzib213G1007 Durio zibethinus HOM05D002958 ORTHO05D003558 2.9e-08 62.8 30 86.7
Migut.M00798 Erythranthe guttata HOM05D002958 ORTHO05D003558 2.9e-08 62.8 30 86.7
Os11g0484000 Oryza sativa ssp. japonica HOM05D002958 ORTHO05D003558 2.9e-08 62.8 35 71.4
PGSC0003DMG400012412 Solanum tuberosum HOM05D002958 ORTHO05D003558 2.9e-08 62.8 32 75.0
TWI39G0621 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 2.9e-08 62.8 32 81.2
Ah.04g164780 Amaranthus hybridus HOM05D002958 ORTHO05D003558 3.8e-08 62.4 30 80.0
A02p10810 Brassica napus HOM05D002958 ORTHO05D003558 3.8e-08 62.4 45 60.0
BraA02t06142Z Brassica rapa HOM05D002958 ORTHO05D003558 3.8e-08 62.4 45 60.0
CSS0011837 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 3.8e-08 62.4 32 78.1
AUR62019437 Chenopodium quinoa HOM05D002958 ORTHO05D003558 3.8e-08 62.4 30 83.3
Duzib170G0760 Durio zibethinus HOM05D002958 ORTHO05D003558 3.8e-08 62.4 32 81.2
ECA236G4656 Erigeron canadensis HOM05D002958 ORTHO05D003558 3.8e-08 62.4 30 80.0
Oeu051071.1 Olea europaea HOM05D002958 ORTHO05D003558 3.8e-08 62.4 31 83.9
arahy.Tifrunner.gnm1.ann1.CK6KU2 Arachis hypogaea HOM05D002958 ORTHO05D003558 5.0e-08 62.0 30 80.0
Gohir.A13G147033 Gossypium hirsutum HOM05D002958 ORTHO05D003558 5.0e-08 62.0 32 78.1
THA.LOC104799927 Tarenaya hassleriana HOM05D002958 ORTHO05D003558 5.0e-08 62.0 30 86.7
Actinidia11087 Actinidia chinensis HOM05D002958 ORTHO05D003558 6.5e-08 61.6 32 78.1
Actinidia13022 Actinidia chinensis HOM05D002958 ORTHO05D003558 6.5e-08 61.6 32 78.1
BcaB05g22079 Brassica carinata HOM05D002958 ORTHO05D003558 6.5e-08 61.6 45 60.0
Thecc.07G091600 Theobroma cacao HOM05D002958 ORTHO05D003558 6.5e-08 61.6 32 81.2
A10p11240 Brassica napus HOM05D002958 ORTHO05D003558 8.5e-08 61.2 51 58.8
DCAR_020992 Daucus carota HOM05D002958 ORTHO05D003558 8.5e-08 61.2 41 65.9
Dinv20183 Davidia involucrata HOM05D002958 ORTHO05D003558 8.5e-08 61.2 29 86.2
Gohir.D01G049400 Gossypium hirsutum HOM05D002958 ORTHO05D003558 8.5e-08 61.2 30 83.3
MD03G1229100 Malus domestica HOM05D002958 ORTHO05D003558 8.5e-08 61.2 35 74.3
EL10Ac4g08198 Beta vulgaris HOM05D002958 ORTHO05D003558 1.1e-07 60.8 30 76.7
BcaC03g14381 Brassica carinata HOM05D002958 ORTHO05D003558 1.1e-07 60.8 45 57.8
C02p17920 Brassica napus HOM05D002958 ORTHO05D003558 1.1e-07 60.8 45 57.8
BolC2t07923H Brassica oleracea HOM05D002958 ORTHO05D003558 1.1e-07 60.8 45 57.8
BraA10t43217Z Brassica rapa HOM05D002958 ORTHO05D003558 1.1e-07 60.8 38 68.4
CDE02G0813 Ceratophyllum demersum HOM05D002958 ORTHO05D003558 1.1e-07 60.8 66 39.4
Dinv14925 Davidia involucrata HOM05D002958 ORTHO05D003558 1.1e-07 60.8 28 89.3
Lj8C155G9 Lonicera japonica HOM05D002958 ORTHO05D003558 1.1e-07 60.8 30 86.7
QL08p022191 Quercus lobata HOM05D002958 ORTHO05D003558 1.4e-07 60.5 32 81.2
TWI14G0888 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 1.4e-07 60.5 32 78.1
C09p43840 Brassica napus HOM05D002958 ORTHO05D003558 1.9e-07 60.1 38 68.4
Carub.0008s1414 Capsella rubella HOM05D002958 ORTHO05D003558 1.9e-07 60.1 38 68.4
Thhalv10013244m.g Eutrema salsugineum HOM05D002958 ORTHO05D003558 1.9e-07 60.1 38 68.4
Gohir.D13G151100 Gossypium hirsutum HOM05D002958 ORTHO05D003558 1.9e-07 60.1 33 81.8
Peaxi162Scf00069g01630 Petunia axillaris HOM05D002958 ORTHO05D003558 1.9e-07 60.1 32 75.0
Aa31LG3G10080 Aethionema arabicum HOM05D002958 ORTHO05D003558 2.5e-07 59.7 38 68.4
AL8G28910 Arabidopsis lyrata HOM05D002958 ORTHO05D003558 2.5e-07 59.7 38 68.4
CARHR266980 Cardamine hirsuta HOM05D002958 ORTHO05D003558 2.5e-07 59.7 38 68.4
Sp6g15910 Schrenkiella parvula HOM05D002958 ORTHO05D003558 2.5e-07 59.7 38 68.4
AT5G53850 Arabidopsis thaliana HOM05D002958 ORTHO05D003558 4.2e-07 58.9 30 83.3
Cpa.g.sc83.52 Carica papaya HOM05D002958 ORTHO05D003558 4.2e-07 58.9 29 79.3
Lj8C110T8 Lonicera japonica HOM05D002958 ORTHO05D003558 4.2e-07 58.9 41 63.4
CSS0039562 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 5.5e-07 58.5 33 72.7
CSS0047160 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 5.5e-07 58.5 33 72.7
HanXRQChr09g0270181 Helianthus annuus HOM05D002958 ORTHO05D003558 7.2e-07 58.2 30 80.0
MD11G1249900 Malus domestica HOM05D002958 ORTHO05D003558 7.2e-07 58.2 34 73.5
Manes.13G144832 Manihot esculenta HOM05D002958 ORTHO05D003558 7.2e-07 58.2 30 83.3
BcaC04g20412 Brassica carinata HOM05D002958 ORTHO05D003558 9.4e-07 57.8 38 65.8
BolC9t57268H Brassica oleracea HOM05D002958 ORTHO05D003558 9.4e-07 57.8 38 65.8
CANSAT56G4387 Cannabis sativa HOM05D002958 ORTHO05D003558 9.4e-07 57.8 28 78.6
MSTRG.15237 Avicennia marina HOM05D002958 ORTHO05D003558 1.2e-06 57.4 28 85.7
BcaB08g35744 Brassica carinata HOM05D002958 ORTHO05D003558 1.2e-06 57.4 36 69.4
Gorai.013G170700 Gossypium raimondii HOM05D002958 ORTHO05D003558 1.2e-06 57.4 33 78.8
MBI06_g23079_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 1.2e-06 57.4 50 56.0
PGR083G2586 Punica granatum HOM05D002958 ORTHO05D003558 1.2e-06 57.4 30 73.3
Sc16g0007030 Simmondsia chinensis HOM05D002958 ORTHO05D003558 1.2e-06 57.4 31 74.2
ATR0737G076 Amborella trichopoda HOM05D002958 ORTHO05D003558 1.6e-06 57.0 28 82.1
Prupe.4G180000 Prunus persica HOM05D002958 ORTHO05D003558 2.1e-06 56.6 32 78.1
Pp3c3_4430 Physcomitrium patens HOM05D002958 ORTHO05D003558 2.7e-06 56.2 54 48.1
Zm00001eb169620 Zea mays HOM05D002958 ORTHO05D003558 2.7e-06 56.2 36 61.1
SEGI_08533 Sequoiadendron giganteum HOM05D002958 ORTHO05D003558 3.6e-06 55.8 30 76.7
SEGI_29603 Sequoiadendron giganteum HOM05D002958 ORTHO05D003558 3.6e-06 55.8 30 76.7
AagrBONN_evm.TU.Sc2ySwM_368.412 Anthoceros agrestis HOM05D002958 ORTHO05D003558 7.9e-06 54.7 30 70.0


User provided reference genes

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