Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 1.8e-90 335.9 169 100.0
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 1.1e-79 300.1 167 88.6
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 6.3e-75 284.3 168 85.7
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 6.9e-74 280.8 167 83.8
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 3.8e-72 275.0 163 81.0
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 9.4e-71 270.4 173 79.8
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.1e-70 269.2 173 79.2
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 3.6e-70 268.5 169 78.1
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 6.1e-70 267.7 170 78.2
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 2.6e-68 262.3 169 75.7
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 3.3e-68 261.9 225 61.8
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.7e-67 259.6 169 77.5
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 1.7e-67 259.6 169 78.1
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 2.2e-67 259.2 167 73.7
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 2.2e-67 259.2 167 73.7
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 2.8e-67 258.8 169 78.1
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 4.8e-67 258.1 168 77.4
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 4.8e-67 258.1 167 76.6
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 6.3e-67 257.7 167 78.4
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 8.2e-67 257.3 167 74.3
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 1.1e-66 256.9 171 77.8
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.4e-66 256.5 168 77.4
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 3.1e-66 255.4 167 77.2
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.1e-66 255.4 169 77.5
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.1e-66 255.4 169 77.5
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.1e-66 255.4 169 77.5
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 4.1e-66 255.0 169 77.5
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 7.0e-66 254.2 167 71.9
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 9.1e-66 253.8 177 74.0
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 1.5e-65 253.1 169 74.0
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.5e-65 253.1 167 76.6
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 2.0e-65 252.7 167 71.9
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.6e-65 252.3 169 76.3
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 5.9e-65 251.1 171 73.1
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 5.9e-65 251.1 170 75.9
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 5.9e-65 251.1 167 72.5
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 7.7e-65 250.8 167 75.4
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 7.7e-65 250.8 174 75.9
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.0e-64 250.4 167 72.5
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 1.0e-64 250.4 167 72.5
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 1.0e-64 250.4 167 72.5
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 1.0e-64 250.4 167 72.5
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.0e-64 250.4 174 75.3
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 1.0e-64 250.4 168 75.6
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.0e-64 250.4 167 74.9
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 1.0e-64 250.4 171 73.7
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 1.3e-64 250.0 170 73.5
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.3e-64 250.0 162 75.3
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.3e-64 250.0 171 73.7
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.7e-64 249.6 168 75.0
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.7e-64 249.6 167 71.9
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 1.7e-64 249.6 167 71.9
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.2e-64 249.2 167 71.3
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 2.2e-64 249.2 157 73.2
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 2.2e-64 249.2 157 73.2
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.2e-64 249.2 162 74.7
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.2e-64 249.2 167 71.3
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 2.9e-64 248.8 167 71.3
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 2.9e-64 248.8 168 76.2
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 3.8e-64 248.4 167 71.3
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 3.8e-64 248.4 171 73.1
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 3.8e-64 248.4 159 75.5
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 5.0e-64 248.1 167 71.3
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 5.0e-64 248.1 170 74.1
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 6.5e-64 247.7 167 70.7
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 6.5e-64 247.7 162 74.1
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 6.5e-64 247.7 170 74.1
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 8.5e-64 247.3 169 74.0
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.1e-63 246.9 167 70.7
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.1e-63 246.9 162 74.1
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.4e-63 246.5 157 72.6
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 1.9e-63 246.1 168 71.4
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.9e-63 246.1 167 70.7
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.9e-63 246.1 170 72.9
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 2.5e-63 245.7 166 74.1
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 2.5e-63 245.7 169 75.7
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 3.2e-63 245.4 169 71.0
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 4.2e-63 245.0 170 73.5
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 5.5e-63 244.6 169 72.2
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 5.5e-63 244.6 159 73.6
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 9.4e-63 243.8 171 72.5
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 9.4e-63 243.8 168 72.0
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 1.6e-62 243.0 171 71.3
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 3.6e-62 241.9 158 74.1
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 4.7e-62 241.5 167 73.1
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 8.0e-62 240.7 170 71.2
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 8.0e-62 240.7 181 69.6
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 3.0e-61 238.8 170 72.4
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.9e-61 238.4 162 73.5
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.2e-61 238.0 197 65.0
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.1e-60 236.9 204 62.7
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.5e-60 236.5 197 64.5
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.5e-60 236.5 197 64.5
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 1.5e-60 236.5 165 72.1
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.0e-60 236.1 160 71.9
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 2.6e-60 235.7 170 70.6
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 2.6e-60 235.7 164 72.0
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 4.4e-60 235.0 177 70.6
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 3.7e-59 231.9 157 73.2
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.4e-58 229.9 160 70.0
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 4.1e-58 228.4 164 68.9
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 2.6e-57 225.7 169 65.7
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 4.5e-57 224.9 192 63.5
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 1.0e-56 223.8 166 67.5
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 6.5e-56 221.1 214 58.9
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 1.1e-55 220.3 169 63.9
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.2e-55 217.6 135 77.0
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.2e-54 216.9 172 66.3
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 2.3e-53 212.6 160 63.1
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 2.0e-52 209.5 142 73.2
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 7.5e-52 207.6 171 64.3
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.2e-51 206.1 206 57.3
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 6.3e-51 204.5 259 46.7
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 3.5e-49 198.7 190 61.6
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 5.0e-48 194.9 185 59.5
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 9.4e-47 190.7 111 79.3
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.7e-46 189.1 116 75.9
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.8e-43 179.1 164 57.3
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.3e-40 170.2 114 70.2
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 6.6e-40 167.9 168 58.9
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 6.3e-35 151.4 107 72.0
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 3.1e-34 149.1 113 61.9
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 7.0e-34 147.9 139 48.2
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 1.6e-33 146.7 137 46.7
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 2.0e-33 146.4 119 64.7
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 4.5e-33 145.2 96 76.0
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 3.3e-31 139.0 109 63.3
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 5.6e-31 138.3 101 66.3
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 9.5e-31 137.5 116 62.9
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.4e-29 133.7 114 63.2
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 4.0e-29 132.1 100 69.0
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 1.6e-25 120.2 75 72.0
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 1.6e-25 120.2 75 72.0
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 5.6e-23 111.7 82 69.5
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 5.6e-23 111.7 103 60.2
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 7.3e-23 111.3 128 41.4
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 2.1e-22 109.8 59 86.4
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 1.4e-21 107.1 61 80.3
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.5e-20 103.6 60 80.0
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 2.6e-20 102.8 106 45.3
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 2.9e-19 99.4 102 40.2
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 6.4e-19 98.2 61 72.1
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.4e-18 96.3 123 45.5
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 4.1e-18 95.5 60 71.7
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.1e-17 93.2 93 52.7
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 7.8e-17 91.3 91 47.3
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 4.3e-15 85.5 106 37.7
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 2.1e-14 83.2 50 76.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.1e-13 80.9 104 46.2
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 7.5e-12 74.7 139 30.9
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 5.1e-08 62.0 32 96.9


User provided reference genes

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