Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.9e-178 629.0 310 100.0
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 7.6e-135 484.2 313 77.6
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.0e-123 447.2 249 84.7
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 5.1e-123 444.9 310 72.9
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 6.2e-113 411.4 314 67.8
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.5e-111 406.8 316 63.6
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 1.9e-109 399.8 312 65.4
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 1.8e-107 393.3 312 64.1
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 6.7e-107 391.3 264 71.6
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 8.7e-107 391.0 324 59.6
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 1.5e-106 390.2 250 72.4
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 1.9e-106 389.8 271 66.8
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 5.7e-106 388.3 250 72.0
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 9.7e-106 387.5 312 60.6
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 6.3e-105 384.8 312 63.8
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 6.3e-105 384.8 312 62.5
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 8.2e-105 384.4 311 63.7
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 4.1e-104 382.1 248 71.4
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 5.3e-104 381.7 314 59.9
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 5.3e-104 381.7 317 59.6
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 2.0e-103 379.8 307 63.2
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 2.0e-103 379.8 250 71.6
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 3.4e-103 379.0 314 60.2
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 5.9e-103 378.3 298 62.8
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 1.0e-102 377.5 230 74.8
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 1.0e-102 377.5 230 74.8
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 2.2e-102 376.3 270 65.9
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 3.8e-102 375.6 313 60.1
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 3.8e-102 375.6 313 60.4
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 3.8e-102 375.6 248 69.4
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 5.0e-102 375.2 311 60.8
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 6.5e-102 374.8 271 64.9
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 6.5e-102 374.8 295 62.4
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 6.5e-102 374.8 313 58.8
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 1.4e-101 373.6 310 59.4
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 1.4e-101 373.6 249 70.3
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 1.9e-101 373.2 309 60.5
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 2.5e-101 372.9 314 61.5
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 3.2e-101 372.5 307 60.3
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 7.2e-101 371.3 309 60.5
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 7.2e-101 371.3 241 71.0
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 9.3e-101 370.9 253 69.6
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 9.3e-101 370.9 259 68.7
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 1.2e-100 370.5 308 59.1
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 1.6e-100 370.2 309 58.9
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.7e-100 369.4 263 66.5
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 6.1e-100 368.2 308 59.4
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 6.1e-100 368.2 255 68.2
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 7.9e-100 367.9 310 60.0
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 1.0e-99 367.5 295 61.7
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 1.0e-99 367.5 254 65.7
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 3.9e-99 365.5 248 68.5
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 3.9e-99 365.5 254 65.7
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 8.7e-99 364.4 254 65.7
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 1.5e-98 363.6 250 67.2
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 1.9e-98 363.2 308 59.4
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 1.9e-98 363.2 308 59.4
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 2.5e-98 362.8 252 64.7
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 3.3e-98 362.5 309 58.6
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 5.7e-98 361.7 248 66.9
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 7.4e-98 361.3 307 58.3
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 9.7e-98 360.9 258 64.7
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 9.7e-98 360.9 255 64.7
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 1.7e-97 360.1 309 58.3
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 8.2e-97 357.8 248 66.9
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 1.1e-96 357.5 270 62.2
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 3.1e-96 355.9 230 72.2
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 5.3e-96 355.1 309 57.3
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 6.9e-96 354.8 277 62.1
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 7.7e-95 351.3 230 71.3
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.3e-94 350.5 274 60.6
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.7e-94 350.1 263 63.5
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.1e-93 347.4 250 64.0
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.2e-93 345.5 252 65.9
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.2e-93 345.5 252 65.9
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 9.4e-93 344.4 308 57.5
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 9.4e-93 344.4 253 64.0
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 9.4e-93 344.4 309 55.7
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 2.7e-92 342.8 308 57.5
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 3.9e-91 339.0 247 63.6
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 3.9e-91 339.0 264 61.0
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 2.6e-90 336.3 274 57.3
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 8.2e-89 331.3 245 64.1
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 1.8e-88 330.1 230 68.3
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 6.9e-88 328.2 210 71.9
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 2.2e-86 323.2 319 54.9
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.6e-84 317.0 290 56.9
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.0e-83 314.3 306 55.9
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 2.6e-82 309.7 248 60.9
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 9.7e-82 307.8 217 63.6
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.2e-81 306.6 263 60.1
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 1.7e-78 297.0 180 77.2
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.2e-74 284.3 245 55.5
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 9.1e-72 274.6 243 54.3
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 4.2e-69 265.8 289 50.2
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.6e-68 263.8 192 62.0
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 2.3e-67 260.0 263 53.2
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 1.2e-66 257.7 238 52.9
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 3.7e-65 252.7 151 73.5
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 7.0e-64 248.4 216 55.1
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 5.0e-62 242.3 173 59.5
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 5.6e-53 212.2 176 59.1
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 2.1e-52 210.3 173 57.8
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 2.3e-46 190.3 269 39.8
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 2.3e-46 190.3 171 62.6
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.2e-44 184.5 245 41.2
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 5.6e-37 159.1 167 48.5
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 7.3e-37 158.7 258 39.5
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 9.2e-32 141.7 117 59.0
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 7.8e-31 138.7 189 45.5
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 5.6e-29 132.5 91 67.0
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 5.6e-29 132.5 117 55.6
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 1.1e-27 128.3 93 66.7
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 5.2e-27 125.9 106 52.8
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 1.9e-24 117.5 149 40.9
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 2.3e-22 110.5 179 36.3
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 4.3e-21 106.3 119 50.4
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 2.8e-20 103.6 119 48.7
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 6.9e-19 99.0 63 69.8
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 5.8e-18 95.9 155 39.4
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 7.6e-18 95.5 58 77.6
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 1.6e-15 87.8 145 35.9
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 1.5e-13 81.3 116 41.4
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 4.0e-11 73.2 202 28.2
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 5.3e-11 72.8 56 53.6
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 3.5e-07 60.1 116 33.6
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 6.0e-07 59.3 121 32.2
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 3.0e-06 57.0 41 61.0
Ca_00912_v3 Cicer arietinum L. HOM05D001287 ORTHO05D001226 5.1e-06 56.2 219 24.7
Cfa018838 Carpinus fangiana HOM05D001287 ORTHO05D001226 8.7e-06 55.5 206 23.8


User provided reference genes

Program Settings