Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 8.5e-131 470.3 233 100.0
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 8.5e-131 470.3 233 100.0
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 6.8e-96 354.4 231 75.8
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 8.3e-94 347.4 235 74.5
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 6.2e-89 331.3 231 71.9
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 8.9e-88 327.4 232 70.3
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 4.9e-86 321.6 232 67.7
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 6.4e-86 321.2 232 71.6
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 3.2e-85 318.9 230 69.1
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 5.4e-85 318.2 230 68.7
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 7.1e-85 317.8 230 68.7
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 6.0e-84 314.7 230 68.7
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 1.0e-83 313.9 230 67.4
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 8.6e-83 310.8 234 66.2
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.1e-80 303.9 234 66.2
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 5.2e-80 301.6 228 64.5
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 2.6e-79 299.3 234 65.8
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 7.6e-79 297.7 234 65.4
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 7.6e-79 297.7 232 64.2
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 1.3e-78 297.0 227 64.8
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 1.7e-78 296.6 232 62.1
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 2.2e-78 296.2 234 65.4
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 2.9e-78 295.8 232 62.5
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 2.9e-78 295.8 233 64.4
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 2.9e-78 295.8 212 69.3
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 6.4e-78 294.7 225 65.3
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 1.1e-77 293.9 232 64.2
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.4e-77 293.5 234 65.4
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 2.4e-77 292.7 229 67.7
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 2.4e-77 292.7 215 68.4
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 5.4e-77 291.6 230 63.0
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 5.4e-77 291.6 232 64.7
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 7.1e-77 291.2 234 64.1
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 3.5e-76 288.9 232 63.8
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 7.8e-76 287.7 215 70.2
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 1.3e-75 287.0 232 62.9
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 1.7e-75 286.6 235 64.3
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 3.0e-75 285.8 234 62.8
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 3.0e-75 285.8 234 63.2
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 3.0e-75 285.8 230 62.6
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 8.6e-75 284.3 229 67.2
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 1.1e-74 283.9 232 65.5
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.5e-74 283.5 235 61.7
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 1.9e-74 283.1 232 62.5
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 3.3e-74 282.3 229 64.2
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 3.3e-74 282.3 232 63.8
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 4.3e-74 282.0 234 62.4
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 5.6e-74 281.6 226 62.4
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 1.2e-73 280.4 231 64.1
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 1.6e-73 280.0 242 61.2
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.1e-73 279.6 233 61.4
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 1.8e-72 276.6 233 60.1
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 7.6e-71 271.2 225 62.2
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 1.7e-70 270.0 211 64.9
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 2.4e-69 266.2 232 58.6
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 3.5e-68 262.3 231 58.4
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 2.3e-67 259.6 246 54.5
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 2.3e-67 259.6 231 59.3
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 3.3e-66 255.8 230 56.1
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 5.6e-66 255.0 217 59.4
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 7.3e-66 254.6 230 58.3
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 1.3e-65 253.8 230 58.7
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 3.6e-65 252.3 232 57.8
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 8.1e-65 251.1 224 58.5
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 1.1e-64 250.8 240 55.4
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 3.1e-64 249.2 287 49.8
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 4.0e-64 248.8 232 55.6
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 4.0e-64 248.8 217 58.5
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 5.3e-64 248.4 230 57.8
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 5.3e-64 248.4 212 59.4
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 1.2e-63 247.3 232 56.9
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 1.2e-63 247.3 237 54.9
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 2.0e-63 246.5 226 58.8
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 4.5e-63 245.4 231 55.4
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 7.6e-63 244.6 232 56.0
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 9.9e-63 244.2 216 56.9
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 9.9e-63 244.2 229 55.5
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 2.9e-62 242.7 216 59.3
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 3.8e-62 242.3 230 55.7
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 6.4e-62 241.5 232 55.6
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 8.4e-62 241.1 240 54.2
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.1e-61 240.7 232 56.0
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 1.1e-61 240.7 231 54.5
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 1.1e-61 240.7 211 58.8
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 1.4e-61 240.4 229 54.6
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 3.2e-61 239.2 235 54.9
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 9.3e-61 237.7 234 55.6
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 2.1e-60 236.5 233 53.6
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 4.6e-60 235.3 227 55.1
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 1.0e-59 234.2 216 56.0
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 2.3e-59 233.0 206 57.3
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 3.0e-59 232.6 216 56.0
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 5.1e-59 231.9 280 49.3
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 5.1e-59 231.9 217 54.4
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 4.8e-57 225.3 235 51.5
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 9.0e-56 221.1 246 50.4
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 2.9e-54 216.1 240 52.1
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 3.8e-54 215.7 238 52.1
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 1.1e-53 214.2 199 55.3
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 1.1e-53 214.2 231 49.8
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 3.5e-52 209.1 159 63.5
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 6.7e-51 204.9 238 48.3
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.5e-50 203.8 217 51.2
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 2.5e-50 203.0 200 53.0
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 9.0e-48 194.5 268 44.8
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 1.5e-47 193.7 226 48.2
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 2.0e-47 193.4 224 48.7
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 8.4e-46 188.0 162 61.7
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 4.2e-45 185.7 172 57.6
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 7.9e-44 181.4 223 47.1
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 8.7e-43 177.9 237 44.7
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 3.3e-42 176.0 238 45.4
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 4.3e-42 175.6 236 43.6
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 5.0e-38 162.2 134 62.7
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 1.1e-37 161.0 249 39.4
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 5.5e-37 158.7 134 58.2
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 9.3e-37 157.9 142 59.9
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 7.9e-36 154.8 233 40.8
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 7.9e-36 154.8 191 45.5
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 4.1e-32 142.5 95 68.4
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 6.1e-28 128.6 211 42.2
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 7.9e-28 128.3 97 61.9
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 5.1e-27 125.6 144 50.0
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 3.3e-26 122.9 136 50.7
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 1.4e-24 117.5 112 55.4
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 2.0e-23 113.6 99 59.6
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 8.5e-22 108.2 151 45.0
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 3.6e-20 102.8 103 51.5
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 4.7e-20 102.4 161 36.0
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.0e-19 101.3 124 45.2
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 9.1e-16 88.2 112 44.6
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 9.1e-16 88.2 135 42.2
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 1.7e-14 84.0 103 45.6
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.2e-14 83.6 137 40.1
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 6.5e-14 82.0 73 57.5
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 2.5e-13 80.1 187 31.6
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 3.2e-13 79.7 56 66.1
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 6.1e-12 75.5 77 54.5
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.7e-06 57.4 96 39.6


User provided reference genes

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