Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.2e-101 371.3 183 100.0
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.2e-101 371.3 183 100.0
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 5.0e-94 347.8 170 100.0
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.3e-73 280.0 183 79.8
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 5.6e-53 211.5 103 96.1
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 3.6e-52 208.8 103 93.2
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 3.6e-52 208.8 103 93.2
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 1.8e-51 206.5 99 96.0
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.5e-50 203.4 147 70.7
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 2.6e-50 202.6 103 90.3
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 3.8e-49 198.7 99 91.9
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 8.4e-49 197.6 103 88.3
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 1.4e-48 196.8 103 85.4
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 1.4e-48 196.8 99 90.9
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 1.4e-48 196.8 99 90.9
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 2.4e-48 196.1 99 90.9
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 4.1e-48 195.3 99 89.9
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 1.2e-47 193.7 103 86.4
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 6.0e-47 191.4 103 82.5
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 6.0e-47 191.4 99 84.8
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 7.8e-47 191.0 103 81.6
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.0e-46 190.7 99 86.9
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 1.3e-46 190.3 101 85.1
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 1.7e-46 189.9 103 82.5
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 1.7e-46 189.9 103 82.5
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 1.7e-46 189.9 99 83.8
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 3.9e-46 188.7 103 81.6
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 5.1e-46 188.3 103 80.6
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 5.1e-46 188.3 103 80.6
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 5.1e-46 188.3 99 83.8
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 6.6e-46 188.0 99 82.8
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 6.6e-46 188.0 99 83.8
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 6.6e-46 188.0 103 82.5
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 6.6e-46 188.0 103 82.5
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 6.6e-46 188.0 99 87.9
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 8.7e-46 187.6 99 82.8
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 8.7e-46 187.6 99 84.8
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 8.7e-46 187.6 99 84.8
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 8.7e-46 187.6 99 84.8
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 8.7e-46 187.6 103 81.6
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 8.7e-46 187.6 99 84.8
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 1.1e-45 187.2 102 79.4
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 1.1e-45 187.2 103 79.6
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 1.5e-45 186.8 99 82.8
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 1.5e-45 186.8 103 82.5
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 1.5e-45 186.8 103 80.6
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 1.9e-45 186.4 103 80.6
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 1.9e-45 186.4 103 81.6
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 2.5e-45 186.0 99 84.8
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 2.5e-45 186.0 99 84.8
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 2.5e-45 186.0 103 79.6
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 2.5e-45 186.0 99 84.8
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 2.5e-45 186.0 99 83.8
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 2.5e-45 186.0 103 79.6
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 3.3e-45 185.7 99 82.8
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 3.3e-45 185.7 99 82.8
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 3.3e-45 185.7 99 82.8
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 3.3e-45 185.7 99 82.8
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 3.3e-45 185.7 99 80.8
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 3.3e-45 185.7 99 82.8
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 3.3e-45 185.7 99 82.8
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 3.3e-45 185.7 99 82.8
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 4.3e-45 185.3 99 84.8
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 4.3e-45 185.3 102 81.4
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 4.3e-45 185.3 103 81.6
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 5.6e-45 184.9 99 79.8
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 5.6e-45 184.9 99 83.8
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 5.6e-45 184.9 99 83.8
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 5.6e-45 184.9 99 83.8
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 7.3e-45 184.5 99 82.8
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 7.3e-45 184.5 99 81.8
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 7.3e-45 184.5 99 81.8
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 7.3e-45 184.5 99 83.8
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 7.3e-45 184.5 99 82.8
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 9.6e-45 184.1 179 53.1
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 1.6e-44 183.3 99 81.8
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 1.6e-44 183.3 103 82.5
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 2.1e-44 183.0 103 77.7
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 2.1e-44 183.0 103 77.7
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 2.1e-44 183.0 99 80.8
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 2.1e-44 183.0 103 80.6
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 2.8e-44 182.6 99 80.8
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 3.6e-44 182.2 99 82.8
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 6.2e-44 181.4 99 79.8
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 1.1e-43 180.6 99 82.8
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 3.1e-43 179.1 165 58.2
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 4.0e-43 178.7 99 82.8
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 4.0e-43 178.7 99 82.8
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 5.2e-43 178.3 105 81.0
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.5e-42 176.8 99 83.8
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 2.2e-41 172.9 117 73.5
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 2.4e-40 169.5 98 78.6
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 5.4e-40 168.3 102 74.5
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 5.4e-40 168.3 103 71.8
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 7.1e-40 167.9 99 75.8
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 2.7e-39 166.0 99 76.8
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.3e-36 157.1 97 80.4
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 1.6e-36 156.8 84 82.1
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 7.6e-34 147.9 99 62.6
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 1.7e-33 146.7 99 64.6
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 6.4e-33 144.8 103 69.9
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.1e-32 144.1 76 85.5
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.4e-32 142.9 103 69.9
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 2.1e-31 139.8 99 67.7
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.1e-31 139.8 100 66.0
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 6.2e-28 128.3 76 75.0
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.4e-27 126.3 101 63.4
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 1.5e-26 123.6 72 75.0
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 9.9e-26 120.9 98 55.1
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 3.3e-21 105.9 52 88.5
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 9.6e-21 104.4 102 50.0
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.1e-19 100.9 50 82.0
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 2.4e-19 99.8 101 48.5
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.0e-18 96.7 91 52.7
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 7.9e-15 84.7 64 67.2
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 2.8e-12 76.3 51 62.7
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 3.7e-12 75.9 36 91.7
SalBow3G1907 Salvia bowleyana HOM05D004612 ORTHO05D004940 5.9e-10 68.6 50 68.0
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 2.2e-09 66.6 32 90.6
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 8.5e-09 64.7 32 87.5
Ciclev10024326m.g Citrus clementina HOM05D004612 ORTHO05D004940 5.5e-08 62.0 58 56.9
Atru.chr5.445 Acer truncatum HOM05D004612 ORTHO05D004940 1.6e-07 60.5 58 56.9
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 1.6e-07 60.5 32 84.4
CiPaw.02G028400 Carya illinoinensis HOM05D004612 ORTHO05D004940 2.1e-07 60.1 56 55.4
QL08p049561 Quercus lobata HOM05D004612 ORTHO05D004940 2.7e-07 59.7 57 56.1
SalBow1G8038 Salvia bowleyana HOM05D000815 ORTHO05D000636 2.7e-07 59.7 31 100.0
Migut.B01722 Erythranthe guttata HOM05D004612 ORTHO05D004940 3.6e-07 59.3 57 54.4
FvH4_7g13631 Fragaria vesca HOM05D004612 ORTHO05D004940 1.0e-06 57.8 57 54.4
FAN03G2220 Fragaria x ananassa HOM05D004612 ORTHO05D004940 1.0e-06 57.8 57 54.4
FAN06G2470 Fragaria x ananassa HOM05D004612 ORTHO05D004940 1.0e-06 57.8 57 54.4
Hma1.2p1_0033F.1_g020400 Hydrangea macrophylla HOM05D004612 ORTHO05D004940 1.8e-06 57.0 56 53.6
Cfa003958 Carpinus fangiana HOM05D004612 ORTHO05D004940 2.3e-06 56.6 57 54.4
Prupe.2G162500 Prunus persica HOM05D004612 ORTHO05D004940 3.0e-06 56.2 57 54.4
RcHm_v2.0_Chr1g0353691 Rosa chinensis HOM05D004612 ORTHO05D004940 3.0e-06 56.2 57 54.4
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 3.9e-06 55.8 56 53.6
Haze_15464 Corylus avellana HOM05D004612 ORTHO05D004940 5.1e-06 55.5 57 52.6
CSS0014629 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 6.7e-06 55.1 48 58.3
Dinv32447 Davidia involucrata HOM05D004612 ORTHO05D004940 6.7e-06 55.1 59 50.8


User provided reference genes

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