Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 6.1e-180 634.0 321 100.0
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 6.5e-81 305.1 255 66.3
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.4e-78 297.4 254 62.2
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 5.3e-75 285.4 265 58.9
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.2e-74 284.3 252 61.5
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 1.5e-72 277.3 260 56.9
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 3.2e-72 276.2 254 57.9
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 1.2e-71 274.2 227 65.6
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 2.7e-71 273.1 258 58.9
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 2.3e-70 270.0 240 57.1
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 2.3e-70 270.0 239 61.9
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 5.2e-70 268.9 249 59.0
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 5.2e-70 268.9 257 59.1
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 2.6e-69 266.5 236 60.2
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 5.7e-69 265.4 278 52.9
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 1.7e-68 263.8 262 57.3
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 3.7e-68 262.7 256 56.6
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 6.3e-68 261.9 255 55.7
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 4.1e-67 259.2 255 54.9
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 7.0e-67 258.5 231 60.2
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 9.1e-67 258.1 238 58.8
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 1.2e-66 257.7 260 54.2
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 2.7e-66 256.5 253 56.1
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 2.7e-66 256.5 239 59.8
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 4.5e-66 255.8 262 52.7
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 1.0e-65 254.6 260 52.7
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 8.6e-65 251.5 253 54.2
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 1.9e-64 250.4 273 52.4
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 5.5e-64 248.8 258 51.2
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 5.5e-64 248.8 257 53.7
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 7.2e-64 248.4 277 49.1
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 7.2e-64 248.4 256 53.5
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 9.5e-64 248.1 237 57.0
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.2e-63 247.7 253 52.2
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.6e-63 247.3 254 51.2
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 1.6e-63 247.3 237 56.5
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 1.6e-63 247.3 240 55.4
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 2.8e-63 246.5 258 51.9
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 2.8e-63 246.5 272 49.3
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 6.1e-63 245.4 254 51.6
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 6.1e-63 245.4 254 51.6
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 1.0e-62 244.6 239 54.8
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.0e-62 244.6 258 51.2
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 1.4e-62 244.2 261 52.9
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 1.8e-62 243.8 275 48.7
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 1.8e-62 243.8 264 50.8
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 2.3e-62 243.4 276 49.3
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 2.3e-62 243.4 253 49.4
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 3.0e-62 243.0 257 51.8
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 5.2e-62 242.3 240 54.2
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 5.2e-62 242.3 257 54.5
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 8.9e-62 241.5 255 52.2
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.0e-61 240.4 220 59.1
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.0e-61 240.4 269 52.4
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.6e-61 240.0 264 49.2
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 3.4e-61 239.6 280 48.2
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 4.4e-61 239.2 254 50.4
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 5.7e-61 238.8 262 51.1
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 9.8e-61 238.0 271 51.7
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 9.8e-61 238.0 244 51.6
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 9.8e-61 238.0 251 54.6
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 9.8e-61 238.0 252 50.8
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 1.7e-60 237.3 254 50.0
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 2.2e-60 236.9 257 54.1
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 2.2e-60 236.9 231 54.1
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 8.3e-60 235.0 292 46.6
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 8.3e-60 235.0 249 50.2
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 9.2e-59 231.5 251 53.4
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 2.0e-58 230.3 239 54.4
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 3.5e-58 229.6 252 51.2
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 5.0e-57 225.7 237 53.2
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 5.0e-57 225.7 247 52.6
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 5.0e-57 225.7 256 50.8
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 4.3e-56 222.6 270 50.0
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 2.3e-54 216.9 237 50.6
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 1.7e-52 210.7 238 48.3
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 2.2e-52 210.3 205 52.2
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 5.4e-51 205.7 250 46.8
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 7.8e-50 201.8 218 52.8
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 1.3e-49 201.1 205 54.1
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 2.5e-48 196.8 237 46.8
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 2.5e-48 196.8 252 44.0
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 4.3e-48 196.1 247 46.2
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.3e-48 196.1 198 57.1
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 7.3e-48 195.3 247 44.9
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 9.5e-48 194.9 383 34.7
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 1.4e-46 191.0 185 57.3
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 6.8e-46 188.7 239 49.0
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 2.0e-45 187.2 238 42.4
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 3.9e-41 172.9 185 50.8
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 1.9e-40 170.6 262 42.7
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 8.1e-39 165.2 174 51.1
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 1.4e-38 164.5 202 44.1
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 4.0e-38 162.9 136 58.8
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 6.4e-36 155.6 166 51.2
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 1.9e-35 154.1 102 73.5
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.2e-35 153.3 277 40.1
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.2e-35 153.3 277 40.1
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 7.1e-35 152.1 239 38.1
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.6e-34 149.4 167 47.9
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.0e-33 148.3 122 68.0
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 3.9e-33 146.4 112 65.2
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 8.6e-33 145.2 128 57.8
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 7.3e-32 142.1 175 50.3
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 3.1e-30 136.7 141 53.9
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 2.2e-28 130.6 144 50.7
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 3.8e-28 129.8 252 36.9
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 8.4e-28 128.6 95 63.2
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 8.4e-28 128.6 94 69.1
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 1.4e-27 127.9 131 55.7
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.9e-27 127.5 194 38.1
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 7.1e-27 125.6 140 50.0
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 1.2e-26 124.8 140 50.0
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 1.0e-25 121.7 140 49.3
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 1.0e-25 121.7 140 49.3
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 1.6e-23 114.4 120 50.8
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 5.8e-21 105.9 98 60.2
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 7.6e-21 105.5 110 52.7
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 2.9e-20 103.6 104 51.9
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 3.2e-19 100.1 115 46.1
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 3.5e-18 96.7 238 31.1
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 3.5e-18 96.7 120 45.8
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.9e-16 90.9 67 62.7
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 2.5e-16 90.5 73 61.6
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 7.3e-16 89.0 61 70.5
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 2.1e-15 87.4 126 42.1
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 7.6e-13 79.0 117 40.2
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-12 77.4 66 57.6
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 2.4e-11 73.9 66 54.5
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 6.0e-10 69.3 63 52.4
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.3e-08 63.2 85 43.5


User provided reference genes

Program Settings