Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 5.4e-240 833.9 433 100.0
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 4.2e-184 648.3 435 78.4
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 8.3e-172 607.4 434 73.3
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 5.4e-171 604.7 443 75.6
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 5.0e-169 598.2 439 69.7
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 6.6e-169 597.8 437 72.5
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 6.1e-167 591.3 436 71.1
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 8.0e-167 590.9 434 68.7
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 1.0e-166 590.5 435 69.0
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 7.0e-163 577.8 391 74.2
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 1.2e-162 577.0 441 71.7
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 1.3e-161 573.5 390 72.3
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 1.2e-159 567.0 444 71.2
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 8.0e-159 564.3 390 71.8
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 6.4e-156 554.7 391 72.4
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 9.2e-155 550.8 408 69.4
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.3e-152 542.3 360 73.9
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 3.6e-151 538.9 393 69.2
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 2.3e-150 536.2 392 68.9
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 9.9e-149 530.8 388 66.2
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.6e-146 523.5 394 67.8
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.6e-146 523.5 386 68.7
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 7.8e-146 521.2 390 67.4
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 2.3e-145 519.6 385 67.5
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 2.3e-145 519.6 448 64.5
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 3.9e-145 518.8 392 67.9
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 2.5e-144 516.2 390 66.2
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 4.3e-144 515.4 388 65.2
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 3.1e-142 509.2 394 65.5
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.1e-142 509.2 388 66.5
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 4.0e-142 508.8 438 64.8
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 8.9e-142 507.7 391 65.0
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.2e-141 507.3 393 65.1
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.5e-141 506.9 395 66.1
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 1.5e-141 506.9 391 65.5
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 2.0e-141 506.5 390 66.7
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.2e-140 503.1 395 65.6
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.9e-140 501.9 366 70.2
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 4.9e-140 501.9 392 63.5
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.1e-139 500.7 393 65.6
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.4e-139 500.4 391 64.5
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 2.4e-139 499.6 388 65.2
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 7.1e-139 498.0 390 65.4
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.2e-138 497.3 389 64.0
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.1e-138 496.5 436 61.9
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 3.5e-138 495.7 441 64.4
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 4.6e-138 495.4 436 61.7
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.6e-138 495.4 436 61.7
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 6.0e-138 495.0 388 63.7
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 7.8e-138 494.6 394 65.0
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.3e-137 493.8 436 61.7
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 1.7e-137 493.4 398 63.1
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 5.1e-137 491.9 436 61.5
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 5.1e-137 491.9 393 64.6
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 6.6e-137 491.5 393 64.9
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.9e-136 490.0 389 62.7
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 4.3e-136 488.8 387 63.8
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 4.3e-136 488.8 389 64.3
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 9.6e-136 487.6 390 63.6
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 2.1e-135 486.5 387 64.9
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 2.8e-135 486.1 389 63.8
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 4.8e-135 485.3 401 62.8
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 4.8e-135 485.3 390 63.8
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 8.1e-135 484.6 417 59.5
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.1e-134 484.2 393 65.1
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.4e-134 483.8 389 63.8
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.8e-134 483.4 386 61.9
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.8e-134 483.4 435 63.0
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 3.1e-134 482.6 389 63.8
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 6.9e-134 481.5 390 64.4
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 6.9e-134 481.5 390 64.4
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 1.2e-133 480.7 388 63.1
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 1.2e-133 480.7 390 62.8
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.5e-133 480.3 441 62.4
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.6e-133 479.6 390 63.8
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 5.8e-133 478.4 388 63.1
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 7.6e-133 478.0 394 61.9
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 9.9e-133 477.6 393 62.1
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 1.3e-132 477.2 391 62.1
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.2e-132 476.5 435 60.5
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.1e-131 474.2 438 61.0
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 2.4e-131 473.0 388 62.4
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 3.2e-131 472.6 388 62.4
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 3.2e-131 472.6 388 62.4
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 2.7e-130 469.5 391 62.7
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 3.5e-130 469.2 421 57.5
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 4.6e-130 468.8 402 61.2
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 7.8e-130 468.0 434 61.5
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 7.8e-130 468.0 385 61.8
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.3e-129 467.2 390 62.3
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.3e-129 466.5 389 61.2
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 8.7e-129 464.5 387 64.3
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.5e-128 463.8 389 60.7
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 3.3e-128 462.6 397 60.2
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 7.3e-128 461.5 391 61.6
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 2.8e-127 459.5 390 59.7
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 2.8e-127 459.5 384 62.2
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 3.1e-126 456.1 390 60.5
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 3.1e-126 456.1 399 58.9
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 4.0e-126 455.7 389 62.2
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 1.9e-123 446.8 389 59.6
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 9.3e-123 444.5 389 59.1
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.6e-122 443.7 438 56.4
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 4.6e-122 442.2 390 60.3
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 6.0e-122 441.8 389 60.7
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 7.9e-122 441.4 389 60.7
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.3e-121 440.7 389 59.9
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 8.7e-121 438.0 401 56.9
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 2.8e-119 433.0 389 58.6
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 4.0e-118 429.1 389 58.1
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.1e-115 421.0 395 55.4
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.1e-115 421.0 395 55.4
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.5e-115 418.7 393 55.0
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.0e-113 414.5 417 54.0
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 4.3e-112 409.1 401 54.6
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.6e-111 407.1 385 55.8
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.8e-110 403.7 321 63.2
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.8e-110 403.7 389 56.3
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 7.1e-107 391.7 390 54.1
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.9e-105 386.0 392 51.3
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 9.7e-104 381.3 311 63.7
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.0e-92 342.4 343 56.0
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 8.0e-82 308.5 425 43.1
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 1.9e-75 287.3 225 67.6
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 4.4e-72 276.2 248 58.1
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 5.7e-72 275.8 297 50.5
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 8.3e-71 271.9 394 40.1
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.4e-70 271.2 236 58.5
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.4e-62 243.8 158 74.7
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 7.0e-62 242.3 225 56.9
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.0e-57 226.9 151 76.2
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 5.2e-57 226.1 195 62.1
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 1.6e-53 214.5 155 72.3
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 9.5e-51 205.3 148 68.2
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 9.5e-51 205.3 205 53.7
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 6.0e-45 186.0 427 33.5
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.4e-41 174.9 311 35.0
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.4e-33 148.3 111 67.6
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.6e-16 90.9 79 55.7
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.4e-14 85.1 70 62.9
Actinidia19558 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.5e-11 74.3 94 53.2
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 1.5e-08 65.1 337 24.9
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 7.6e-08 62.8 137 36.5
Pp3c24_9340 Physcomitrium patens HOM05D003180 ORTHO05D003664 1.7e-07 61.6 152 35.5


User provided reference genes

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