Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 0.0e+00 1151.7 629 100.0
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 1.7e-117 427.6 651 46.7
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 2.5e-116 423.7 649 46.8
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 6.9e-111 405.6 604 46.9
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 2.6e-110 403.7 630 45.7
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 3.8e-109 399.8 606 46.2
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 1.1e-105 388.3 574 46.5
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 5.2e-98 362.8 648 42.4
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 2.6e-97 360.5 642 41.9
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 3.1e-95 353.6 641 41.7
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 4.5e-94 349.7 666 41.7
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 2.3e-90 337.4 657 41.6
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 4.0e-90 336.7 615 43.1
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.2e-89 335.1 552 45.3
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 1.7e-88 331.3 657 40.9
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 1.7e-88 331.3 646 41.2
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 4.8e-88 329.7 650 39.7
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 4.8e-88 329.7 640 41.9
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 6.3e-88 329.3 345 58.8
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 8.3e-88 328.9 688 39.8
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.1e-87 326.6 647 40.8
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 7.0e-87 325.9 690 39.0
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 5.9e-86 322.8 690 38.1
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 7.7e-86 322.4 527 44.6
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 1.3e-85 321.6 642 40.3
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 2.3e-85 320.9 670 39.9
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.9e-85 320.5 640 38.8
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 8.6e-85 318.9 635 40.2
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 2.5e-84 317.4 646 38.5
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.2e-84 315.8 642 39.7
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 2.1e-83 314.3 564 42.7
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.8e-83 313.9 692 39.6
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.1e-83 312.8 650 38.3
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 1.8e-82 311.2 627 38.9
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 2.3e-82 310.8 615 40.2
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 3.0e-82 310.5 541 43.1
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 1.2e-81 308.5 608 40.0
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 1.2e-81 308.5 652 38.8
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 2.0e-81 307.8 558 40.5
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.6e-81 307.4 620 41.0
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 5.7e-81 306.2 712 35.8
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 5.7e-81 306.2 593 41.5
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 7.5e-81 305.8 597 39.4
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 7.5e-81 305.8 652 38.2
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 7.5e-81 305.8 657 38.8
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 1.3e-80 305.1 513 44.6
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 1.3e-80 305.1 692 38.4
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 2.2e-80 304.3 665 39.1
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 2.2e-80 304.3 615 39.7
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 4.9e-80 303.1 621 39.3
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.3e-80 302.8 597 38.4
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.8e-79 301.2 628 40.0
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 3.1e-79 300.4 599 39.2
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.2e-78 298.5 322 57.8
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 1.2e-78 298.5 543 42.5
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 3.5e-78 297.0 608 41.6
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 1.0e-77 295.4 556 39.6
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.3e-77 295.0 602 37.2
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.3e-77 295.0 655 39.1
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 1.3e-77 295.0 633 38.9
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.3e-77 294.3 613 40.3
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 3.8e-77 293.5 599 38.4
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 5.0e-77 293.1 595 38.5
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 1.1e-76 292.0 671 38.6
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 1.1e-76 292.0 598 38.1
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 1.5e-76 291.6 589 40.1
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 1.5e-76 291.6 590 38.0
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.9e-76 291.2 598 38.1
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.3e-76 290.4 638 39.7
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 9.5e-76 288.9 593 38.1
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.6e-75 288.1 636 39.3
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.6e-75 288.1 622 39.1
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 2.8e-75 287.3 312 55.4
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.7e-75 286.6 635 38.4
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.4e-74 285.0 658 37.2
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 1.8e-74 284.6 670 37.3
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 1.8e-74 284.6 585 39.7
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 2.3e-74 284.3 649 36.1
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 3.0e-74 283.9 613 39.2
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.5e-73 281.6 557 41.3
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 2.0e-73 281.2 620 39.8
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.6e-73 280.8 561 39.9
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 3.4e-73 280.4 601 38.9
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.7e-72 278.1 607 38.2
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.7e-72 278.1 294 59.2
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 2.2e-72 277.7 605 38.2
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 4.9e-72 276.6 624 37.8
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.4e-71 274.2 660 37.1
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 3.2e-71 273.9 626 37.4
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 5.4e-71 273.1 570 39.3
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 7.0e-71 272.7 612 37.6
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 9.2e-71 272.3 618 39.6
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 9.2e-71 272.3 554 38.1
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.7e-70 270.8 627 37.8
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 4.6e-70 270.0 292 56.5
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 6.0e-70 269.6 558 37.3
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 6.0e-70 269.6 336 54.8
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.7e-69 268.1 623 36.8
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 3.3e-68 263.8 603 36.7
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 4.3e-68 263.5 581 39.1
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 2.8e-67 260.8 613 36.9
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 2.8e-67 260.8 584 36.8
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 6.2e-67 259.6 607 38.1
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 8.0e-67 259.2 633 36.5
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.0e-67 259.2 292 55.1
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 1.1e-66 258.8 603 37.6
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 2.3e-66 257.7 592 35.6
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 5.2e-66 256.5 622 36.0
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 8.9e-66 255.8 595 36.8
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 3.4e-65 253.8 613 36.9
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 3.4e-65 253.8 601 36.9
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 6.4e-64 249.6 577 36.6
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 4.1e-63 246.9 606 36.0
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 6.0e-62 243.0 597 35.2
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.3e-61 241.9 216 62.0
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.3e-61 241.9 216 62.0
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 2.3e-61 241.1 525 38.3
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 2.3e-61 241.1 476 41.0
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 8.6e-61 239.2 597 35.5
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.5e-60 238.4 646 35.4
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.5e-60 238.4 514 39.7
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.9e-60 238.0 567 35.6
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 5.6e-60 236.5 557 36.4
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 4.7e-59 233.4 243 54.7
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 6.2e-59 233.0 222 59.0
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 4.9e-56 223.4 567 35.6
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 4.1e-55 220.3 557 34.8
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 3.5e-54 217.2 631 32.3
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 3.5e-54 217.2 603 33.2
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 1.8e-50 204.9 567 33.0
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 3.8e-48 197.2 385 38.7
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 3.2e-47 194.1 544 32.7
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 3.2e-47 194.1 458 36.7
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 4.2e-47 193.7 236 52.1
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 5.4e-47 193.4 189 58.7
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 7.1e-47 193.0 236 51.7
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 9.2e-47 192.6 431 37.1
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 6.6e-45 186.4 597 31.0
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 7.3e-44 183.0 415 37.6
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.0e-42 177.2 231 45.0
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.2e-41 175.6 289 42.2
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 7.6e-41 172.9 315 43.2
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 9.9e-41 172.6 256 41.8
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 8.7e-37 159.5 260 36.2
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.3e-35 155.6 279 41.2
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 2.1e-35 154.8 533 31.0
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 5.8e-33 146.7 197 49.7
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 4.6e-30 137.1 514 29.6
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.0e-30 136.7 242 40.5
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 3.3e-28 131.0 122 61.5
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 2.7e-22 111.3 189 39.2
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 2.7e-22 111.3 298 30.9
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.3e-21 108.2 247 37.7
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 8.7e-21 106.3 122 53.3
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 4.3e-20 104.0 216 36.1
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 4.0e-18 97.4 79 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.5e-17 95.5 506 26.5
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.0e-16 92.8 181 35.9
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 1.7e-16 92.0 91 54.9
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 6.0e-14 83.6 204 32.4
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 1.3e-13 82.4 59 67.8
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.5e-12 78.2 76 61.8
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.3e-12 77.8 131 40.5
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.8e-11 74.7 90 54.4
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 3.7e-11 74.3 203 27.6
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 6.9e-10 70.1 102 44.1
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.7e-09 66.6 93 50.5
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 7.7e-09 66.6 66 59.1
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 3.8e-08 64.3 53 56.6
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 3.8e-08 64.3 53 56.6
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 7.2e-07 60.1 151 38.4
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 9.4e-07 59.7 154 33.1
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.6e-06 58.9 78 52.6
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 3.6e-06 57.8 77 42.9
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 3.6e-06 57.8 56 53.6
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 6.1e-06 57.0 101 41.6
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 7.9e-06 56.6 82 39.0


User provided reference genes

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