Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.5e-211 739.2 365 100.0
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 3.7e-189 664.8 365 90.4
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.5e-169 599.7 367 82.0
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 2.3e-167 592.4 369 79.4
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 5.2e-167 591.3 369 79.9
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 8.3e-165 583.9 352 82.7
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 3.5e-163 578.6 365 78.6
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 1.7e-162 576.2 365 78.4
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.3e-162 575.9 365 78.4
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 6.6e-162 574.3 366 78.1
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.8e-160 568.9 364 77.5
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 3.6e-160 568.5 371 75.7
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.0e-159 567.0 372 76.9
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 2.3e-159 565.8 308 86.4
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 3.0e-159 565.5 366 77.9
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 3.0e-159 565.5 365 76.7
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 5.2e-159 564.7 370 76.2
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 8.9e-159 563.9 373 76.9
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 8.9e-159 563.9 373 75.6
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 2.6e-158 562.4 375 76.0
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.6e-158 562.4 366 77.0
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.6e-158 562.4 358 77.7
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 3.4e-158 562.0 373 75.3
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 4.4e-158 561.6 309 84.5
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 7.5e-158 560.8 368 75.5
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 2.2e-157 559.3 386 75.4
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 3.7e-157 558.5 364 76.9
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.4e-156 556.6 311 83.3
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 4.1e-156 555.1 357 75.4
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 2.7e-155 552.4 375 74.4
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 2.7e-155 552.4 368 75.5
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 2.7e-155 552.4 366 75.7
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 3.5e-155 552.0 374 74.6
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 5.9e-155 551.2 370 74.9
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 7.8e-155 550.8 369 73.2
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 7.8e-155 550.8 308 83.1
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 7.8e-155 550.8 363 76.3
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 1.0e-154 550.4 370 73.2
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 2.3e-154 549.3 371 73.3
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 2.9e-154 548.9 371 74.1
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 5.0e-154 548.1 377 72.1
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 6.6e-154 547.7 321 79.4
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 3.3e-153 545.4 372 72.3
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 7.3e-153 544.3 304 83.2
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 9.5e-153 543.9 367 70.8
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.2e-152 543.5 364 75.3
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 2.8e-152 542.3 370 72.7
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 6.1e-152 541.2 366 72.4
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 8.0e-152 540.8 372 72.8
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 1.0e-151 540.4 309 82.2
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.8e-151 539.7 367 72.8
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 5.2e-151 538.1 367 73.6
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 5.2e-151 538.1 357 74.2
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 1.5e-150 536.6 370 72.7
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.5e-150 536.6 364 73.9
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.5e-150 536.6 369 73.4
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 4.4e-150 535.0 366 73.0
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 5.8e-150 534.6 366 73.0
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 9.8e-150 533.9 376 71.5
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 1.3e-149 533.5 386 69.9
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.7e-149 533.1 483 59.6
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 2.2e-149 532.7 367 72.5
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 2.2e-149 532.7 387 68.0
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 2.9e-149 532.3 366 70.5
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 3.7e-149 531.9 365 71.0
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 8.3e-149 530.8 367 72.2
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 1.1e-148 530.4 365 71.0
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 1.9e-148 529.6 365 71.0
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.9e-148 529.6 392 69.9
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 9.2e-148 527.3 368 72.6
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 9.2e-148 527.3 367 71.7
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 3.5e-147 525.4 369 69.6
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 3.5e-147 525.4 392 69.1
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 6.0e-147 524.6 366 72.4
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 6.0e-147 524.6 366 69.7
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 6.0e-147 524.6 359 73.5
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 7.8e-147 524.2 367 71.9
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 7.8e-147 524.2 365 70.4
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.0e-146 523.9 368 70.7
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.0e-146 523.9 364 71.7
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 1.7e-146 523.1 326 76.1
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 3.0e-146 522.3 326 76.4
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 6.6e-146 521.2 368 68.8
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 8.6e-146 520.8 352 73.0
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 1.5e-145 520.0 369 69.1
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 2.5e-145 519.2 363 71.3
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.5e-145 519.2 365 70.4
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 3.3e-145 518.8 350 73.4
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 3.3e-145 518.8 350 73.4
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 3.3e-145 518.8 365 70.1
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 1.2e-144 516.9 364 70.9
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.6e-144 516.5 320 77.5
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.6e-144 516.5 365 69.3
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 2.1e-144 516.2 354 72.3
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.1e-144 516.2 366 70.8
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 3.6e-144 515.4 369 70.7
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 6.2e-144 514.6 371 70.4
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 8.0e-144 514.2 365 69.0
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 8.0e-144 514.2 364 69.2
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.4e-143 513.5 308 76.9
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 3.1e-143 512.3 365 70.7
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 4.9e-141 505.0 365 71.8
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 4.1e-140 501.9 373 69.2
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 1.2e-139 500.4 369 68.6
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.6e-139 500.0 314 73.2
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 7.3e-137 491.1 328 75.6
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 2.6e-134 482.6 395 63.8
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 2.6e-134 482.6 320 74.1
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 6.6e-130 468.0 277 80.5
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.6e-126 456.1 331 70.7
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 3.8e-125 452.2 327 69.1
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 3.2e-124 449.1 291 75.9
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 2.5e-121 439.5 313 65.5
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 3.1e-119 432.6 282 70.2
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 2.1e-115 419.9 325 63.4
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-113 414.1 373 63.0
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 4.8e-112 408.7 289 70.9
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 5.8e-110 401.7 344 64.5
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 2.2e-109 399.8 285 67.4
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.1e-105 387.5 244 74.2
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 3.7e-104 382.5 287 63.4
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 7.6e-102 374.8 290 62.1
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 3.2e-100 369.4 255 72.9
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 1.8e-98 363.6 260 65.0
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 9.0e-95 351.3 294 57.5
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 5.0e-93 345.5 233 71.7
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 7.4e-89 331.6 344 57.3
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 6.9e-87 325.1 288 57.3
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 3.3e-81 306.2 168 85.1
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 9.4e-76 288.1 159 84.3
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 2.6e-65 253.4 227 57.3
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.2e-59 234.6 127 85.0
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 4.0e-58 229.6 149 71.8
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.5e-52 210.3 331 42.9
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 1.2e-49 201.4 147 67.3
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.9e-44 184.1 100 83.0
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 3.6e-43 179.9 147 60.5
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 5.7e-41 172.6 147 59.9
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.8e-39 167.5 105 69.5
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 3.3e-36 156.8 110 63.6
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 9.5e-36 155.2 147 54.4
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.3e-29 134.8 72 86.1
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 3.4e-25 120.2 110 60.9
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.5e-20 104.0 64 75.0
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 3.3e-20 103.6 57 78.9
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 2.9e-16 90.5 67 61.2
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 2.9e-16 90.5 67 61.2
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.9e-15 87.8 51 76.5
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 4.1e-15 86.7 51 76.5
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.2e-14 85.1 44 86.4
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 2.3e-13 80.9 39 89.7
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 4.3e-12 76.6 93 54.8
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 1.6e-11 74.7 35 88.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 4.0e-10 70.1 40 85.0
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 2.2e-08 64.3 58 53.4


User provided reference genes

Program Settings