Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 8.0e-33 143.3 78 100.0
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 7.7e-20 100.1 77 70.1
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 5.0e-19 97.4 73 68.5
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 8.6e-19 96.7 77 70.1
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 4.2e-18 94.4 72 69.4
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 5.5e-18 94.0 74 68.9
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 7.2e-18 93.6 77 64.9
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 9.5e-18 93.2 72 69.4
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.6e-17 92.4 72 70.8
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 2.1e-17 92.0 74 67.6
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 2.1e-17 92.0 72 69.4
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 2.8e-17 91.7 72 66.7
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 2.8e-17 91.7 77 66.2
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 6.1e-17 90.5 77 64.9
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.0e-16 89.7 72 72.2
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 2.3e-16 88.6 77 61.0
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 3.0e-16 88.2 72 65.3
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.2e-16 87.4 72 65.3
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 6.8e-16 87.0 73 63.0
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 6.8e-16 87.0 72 66.7
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 8.9e-16 86.7 77 66.2
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.2e-15 86.3 77 61.0
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 1.2e-15 86.3 77 63.6
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 1.5e-15 85.9 72 62.5
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.0e-15 85.5 77 63.6
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 2.6e-15 85.1 72 61.1
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 2.6e-15 85.1 72 61.1
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 2.6e-15 85.1 72 62.5
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 3.4e-15 84.7 72 65.3
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 4.4e-15 84.3 74 62.2
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 4.4e-15 84.3 73 61.6
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 4.4e-15 84.3 76 63.2
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.7e-15 84.0 74 63.5
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 5.7e-15 84.0 72 62.5
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 5.7e-15 84.0 72 62.5
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 5.7e-15 84.0 73 64.4
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 5.7e-15 84.0 74 62.2
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 9.8e-15 83.2 76 59.2
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 1.3e-14 82.8 73 63.0
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 1.7e-14 82.4 72 61.1
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.2e-14 82.0 77 62.3
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 2.9e-14 81.6 74 60.8
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.7e-14 81.3 70 57.1
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 4.9e-14 80.9 77 61.0
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 4.9e-14 80.9 63 69.8
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 6.3e-14 80.5 72 59.7
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 6.3e-14 80.5 77 57.1
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 6.3e-14 80.5 77 61.0
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 6.3e-14 80.5 77 61.0
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 8.3e-14 80.1 72 65.3
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 8.3e-14 80.1 77 58.4
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 8.3e-14 80.1 75 64.0
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 1.4e-13 79.3 77 55.8
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.4e-13 79.3 76 57.9
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 1.4e-13 79.3 76 60.5
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 1.4e-13 79.3 76 60.5
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.4e-13 79.3 76 57.9
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.4e-13 79.3 72 65.3
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.4e-13 79.3 68 61.8
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 1.8e-13 79.0 66 62.1
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.8e-13 79.0 72 61.1
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 1.8e-13 79.0 72 55.6
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 1.8e-13 79.0 77 58.4
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.4e-13 78.6 70 62.9
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 3.2e-13 78.2 74 56.8
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 4.1e-13 77.8 77 55.8
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 4.1e-13 77.8 72 59.7
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 5.4e-13 77.4 75 58.7
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.4e-13 77.4 77 59.7
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 7.0e-13 77.0 77 54.5
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 7.0e-13 77.0 77 54.5
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 7.0e-13 77.0 74 59.5
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 7.0e-13 77.0 76 57.9
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 9.2e-13 76.6 72 61.1
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.2e-12 76.3 77 55.8
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.6e-12 75.9 74 55.4
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.6e-12 75.9 77 57.1
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 1.6e-12 75.9 77 50.6
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 2.0e-12 75.5 77 58.4
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 2.7e-12 75.1 72 55.6
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.7e-12 75.1 54 72.2
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 4.6e-12 74.3 58 69.0
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 4.6e-12 74.3 77 58.4
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 7.8e-12 73.6 72 58.3
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 7.8e-12 73.6 72 59.7
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 7.8e-12 73.6 68 58.8
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 1.3e-11 72.8 72 55.6
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 1.3e-11 72.8 72 58.3
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 1.3e-11 72.8 59 62.7
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 1.7e-11 72.4 72 59.7
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 1.7e-11 72.4 72 56.9
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 1.7e-11 72.4 70 58.6
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 1.7e-11 72.4 72 56.9
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.3e-11 72.0 72 56.9
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.3e-11 72.0 77 57.1
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 3.9e-11 71.2 63 61.9
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 6.6e-11 70.5 73 54.8
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 8.6e-11 70.1 77 53.2
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 1.1e-10 69.7 68 58.8
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 1.1e-10 69.7 72 54.2
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 1.5e-10 69.3 73 53.4
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 2.5e-10 68.6 77 50.6
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 2.5e-10 68.6 60 60.0
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 3.3e-10 68.2 71 54.9
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 4.3e-10 67.8 77 53.2
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 5.6e-10 67.4 74 56.8
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 1.2e-09 66.2 61 57.4
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 2.1e-09 65.5 72 55.6
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.1e-09 65.5 77 53.2
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.1e-09 65.5 77 54.5
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.8e-09 65.1 72 54.2
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.6e-09 64.7 77 55.8
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 8.0e-09 63.5 72 52.8
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.0e-08 63.2 72 54.2
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.0e-08 63.2 59 59.3
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.8e-08 62.4 77 50.6
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.8e-08 62.4 77 50.6
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.8e-08 62.4 72 52.8
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.8e-08 62.4 72 52.8
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 1.8e-08 62.4 72 50.0
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 2.3e-08 62.0 68 52.9
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 3.1e-08 61.6 68 55.9
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 3.1e-08 61.6 72 52.8
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 4.0e-08 61.2 61 57.4
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 5.2e-08 60.8 77 50.6
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 8.9e-08 60.1 66 54.5
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 8.9e-08 60.1 66 54.5
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.2e-07 59.7 54 55.6
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.2e-07 59.7 68 54.4
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 1.2e-07 59.7 67 55.2
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.2e-07 59.7 54 55.6
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.0e-07 58.9 68 54.4
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 2.0e-07 58.9 66 54.5
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.0e-07 58.9 75 48.0
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.0e-07 58.9 61 54.1
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.6e-07 58.5 54 53.7
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 3.4e-07 58.2 61 57.4
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 3.4e-07 58.2 54 55.6
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 3.4e-07 58.2 53 56.6
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.4e-07 58.2 72 51.4
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 3.4e-07 58.2 72 45.8
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 4.4e-07 57.8 54 51.9
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 4.4e-07 57.8 54 51.9
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 4.4e-07 57.8 54 51.9
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 4.4e-07 57.8 54 51.9
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 4.4e-07 57.8 54 51.9
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 4.4e-07 57.8 72 50.0
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 4.4e-07 57.8 54 51.9
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 4.4e-07 57.8 71 49.3
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 5.8e-07 57.4 66 51.5
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 5.8e-07 57.4 68 52.9
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 7.5e-07 57.0 69 53.6
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 7.5e-07 57.0 68 50.0
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 7.5e-07 57.0 54 51.9
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 7.5e-07 57.0 54 51.9
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 7.5e-07 57.0 54 51.9
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 7.5e-07 57.0 54 51.9
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 7.5e-07 57.0 54 51.9
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 7.5e-07 57.0 68 52.9
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.3e-06 56.2 54 53.7
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 1.3e-06 56.2 68 52.9
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 1.7e-06 55.8 68 48.5
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.7e-06 55.8 68 50.0
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 2.2e-06 55.5 69 55.1
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 2.9e-06 55.1 69 53.6
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 2.9e-06 55.1 69 53.6
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 2.9e-06 55.1 66 51.5
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 3.7e-06 54.7 54 51.9
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 3.7e-06 54.7 68 54.4
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 4.9e-06 54.3 46 67.4
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 6.4e-06 53.9 42 64.3


User provided reference genes

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