Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G1631 Salvia bowleyana HOM05D001360 ORTHO05D001231 1.7e-38 162.2 82 100.0
PSO732G0065 Papaver somniferum HOM05D001360 ORTHO05D001231 8.4e-09 63.5 51 64.7
C03p42910 Brassica napus HOM05D001360 ORTHO05D001231 1.1e-08 63.2 50 66.0
DCAR_018615 Daucus carota HOM05D001360 ORTHO05D001231 1.4e-08 62.8 41 78.0
Actinidia23349 Actinidia chinensis HOM05D001360 ORTHO05D001231 1.9e-08 62.4 40 82.5
Actinidia29999 Actinidia chinensis HOM05D001360 ORTHO05D001231 1.9e-08 62.4 40 82.5
Manes.13G055900 Manihot esculenta HOM05D001360 ORTHO05D001231 1.9e-08 62.4 44 70.5
Potri.014G176000 Populus trichocarpa HOM05D001360 ORTHO05D001231 2.5e-08 62.0 50 68.0
VMungo1383G0442 Vigna mungo HOM05D001360 ORTHO05D001231 2.5e-08 62.0 51 66.7
AL3G18830 Arabidopsis lyrata HOM05D001360 ORTHO05D001231 3.2e-08 61.6 47 70.2
AT3G07510 Arabidopsis thaliana HOM05D001360 ORTHO05D001231 3.2e-08 61.6 47 70.2
FAN15G0553 Fragaria x ananassa HOM05D001360 ORTHO05D001231 3.2e-08 61.6 51 64.7
FAN15G1977 Fragaria x ananassa HOM05D001360 ORTHO05D001231 3.2e-08 61.6 51 64.7
FAN27G1413 Fragaria x ananassa HOM05D001360 ORTHO05D001231 3.2e-08 61.6 51 64.7
PSO675G2269 Papaver somniferum HOM05D001360 ORTHO05D001231 3.2e-08 61.6 49 67.3
Peaxi162Scf00841g00032 Petunia axillaris HOM05D001360 ORTHO05D001231 3.2e-08 61.6 40 77.5
CAN.G253.3 Capsicum annuum HOM05D001360 ORTHO05D001231 4.2e-08 61.2 40 77.5
ClCG09G007830 Citrullus lanatus HOM05D001360 ORTHO05D001231 4.2e-08 61.2 41 75.6
arahy.Tifrunner.gnm1.ann1.H3Z9GC Arachis hypogaea HOM05D001360 ORTHO05D001231 5.5e-08 60.8 50 70.0
arahy.Tifrunner.gnm1.ann1.MSL63E Arachis hypogaea HOM05D001360 ORTHO05D001231 5.5e-08 60.8 50 70.0
Carub.0003s0705 Capsella rubella HOM05D001360 ORTHO05D001231 5.5e-08 60.8 39 79.5
Thhalv10021445m.g Eutrema salsugineum HOM05D001360 ORTHO05D001231 5.5e-08 60.8 47 70.2
BcaC05g29541 Brassica carinata HOM05D001360 ORTHO05D001231 7.1e-08 60.5 40 80.0
BcaC05g29543 Brassica carinata HOM05D001360 ORTHO05D001231 7.1e-08 60.5 40 80.0
A05p40700 Brassica napus HOM05D001360 ORTHO05D001231 7.1e-08 60.5 40 80.0
C05p59810 Brassica napus HOM05D001360 ORTHO05D001231 7.1e-08 60.5 40 80.0
BolC5t34635H Brassica oleracea HOM05D001360 ORTHO05D001231 7.1e-08 60.5 40 80.0
BraA05t22801Z Brassica rapa HOM05D001360 ORTHO05D001231 7.1e-08 60.5 40 80.0
PSO732G0270 Papaver somniferum HOM05D001360 ORTHO05D001231 7.1e-08 60.5 40 77.5
Sabra14G0134900 Salix brachista HOM05D001360 ORTHO05D001231 7.1e-08 60.5 41 75.6
CARHR082160 Cardamine hirsuta HOM05D001360 ORTHO05D001231 9.3e-08 60.1 47 68.1
Ca_07441_v3 Cicer arietinum L. HOM05D001360 ORTHO05D001231 9.3e-08 60.1 53 64.2
Glyma.18G154000 Glycine max HOM05D001360 ORTHO05D001231 9.3e-08 60.1 41 75.6
Nitab4.5_0000038g0200 Nicotiana tabacum HOM05D001360 ORTHO05D001231 9.3e-08 60.1 40 85.0
Nitab4.5_0005686g0040 Nicotiana tabacum HOM05D001360 ORTHO05D001231 9.3e-08 60.1 40 85.0
Phvul.008G137900 Phaseolus vulgaris HOM05D001360 ORTHO05D001231 9.3e-08 60.1 41 75.6
Prupe.8G188200 Prunus persica HOM05D001360 ORTHO05D001231 9.3e-08 60.1 54 64.8
Sp3g06420 Schrenkiella parvula HOM05D001360 ORTHO05D001231 9.3e-08 60.1 36 86.1
A03p35290 Brassica napus HOM05D001360 ORTHO05D001231 1.2e-07 59.7 50 62.0
BolC3t16559H Brassica oleracea HOM05D001360 ORTHO05D001231 1.2e-07 59.7 50 62.0
BraA03t12707Z Brassica rapa HOM05D001360 ORTHO05D001231 1.2e-07 59.7 50 62.0
Cpa.g.sc8.50 Carica papaya HOM05D001360 ORTHO05D001231 1.2e-07 59.7 40 77.5
Haze_03595 Corylus avellana HOM05D001360 ORTHO05D001231 1.2e-07 59.7 40 77.5
Lsat_1_v5_gn_5_176620 Lactuca sativa HOM05D001360 ORTHO05D001231 1.2e-07 59.7 40 75.0
MD05G1156100 Malus domestica HOM05D001360 ORTHO05D001231 1.2e-07 59.7 46 71.7
Medtr7g051210 Medicago truncatula HOM05D001360 ORTHO05D001231 1.2e-07 59.7 43 74.4
TPR.G26846 Trifolium pratense HOM05D000045 ORTHO05D000611 1.2e-07 59.7 41 75.6
Ciclev10016823m.g Citrus clementina HOM05D001360 ORTHO05D001231 1.6e-07 59.3 41 73.2
FAN24G2010 Fragaria x ananassa HOM05D001360 ORTHO05D001231 1.6e-07 59.3 40 75.0
SalBow1G0984 Salvia bowleyana HOM05D001360 ORTHO05D001231 1.6e-07 59.3 41 78.0
SalBow3G1192 Salvia bowleyana HOM05D001360 ORTHO05D001231 1.6e-07 59.3 41 78.0
TWI18G0104 Tripterygium wilfordii HOM05D001360 ORTHO05D001231 1.6e-07 59.3 40 77.5
Cc01_g15940 Coffea canephora HOM05D001360 ORTHO05D001231 2.1e-07 58.9 40 77.5
QL09p047247 Quercus lobata HOM05D000003 ORTHO05D001231 2.1e-07 58.9 40 77.5
QL09p047536 Quercus lobata HOM05D001360 ORTHO05D001231 2.1e-07 58.9 40 77.5
RcHm_v2.0_Chr6g0282541 Rosa chinensis HOM05D001360 ORTHO05D001231 2.1e-07 58.9 51 66.7
Solyc09g047930.1 Solanum lycopersicum HOM05D001360 ORTHO05D001231 2.1e-07 58.9 36 83.3
Sopen09g016040 Solanum pennellii HOM05D001360 ORTHO05D001231 2.1e-07 58.9 36 83.3
PGSC0003DMG400029171 Solanum tuberosum HOM05D001360 ORTHO05D001231 2.1e-07 58.9 36 83.3
GSVIVG01001895001 Vitis vinifera HOM05D001360 ORTHO05D001231 2.1e-07 58.9 40 77.5
GSVIVG01005237001 Vitis vinifera HOM05D001360 ORTHO05D001231 2.1e-07 58.9 40 77.5
CSS0034994 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 2.7e-07 58.5 51 62.7
MELO3C015727.2 Cucumis melo HOM05D001360 ORTHO05D001231 2.7e-07 58.5 44 72.7
CsaV3_7G027300 Cucumis sativus L. HOM05D001360 ORTHO05D001231 2.7e-07 58.5 44 72.7
FvH4_2g17600 Fragaria vesca HOM05D001360 ORTHO05D001231 2.7e-07 58.5 33 87.9
FAN27G0972 Fragaria x ananassa HOM05D001360 ORTHO05D001231 2.7e-07 58.5 33 87.9
Glyma.08G343000 Glycine max HOM05D001360 ORTHO05D001231 2.7e-07 58.5 51 62.7
Lsat_1_v5_gn_9_16561 Lactuca sativa HOM05D001360 ORTHO05D001231 2.7e-07 58.5 39 74.4
Lj1g0010077 Lotus japonicus HOM05D001360 ORTHO05D001231 2.7e-07 58.5 53 67.9
MD05G1156000 Malus domestica HOM05D001360 ORTHO05D001231 2.7e-07 58.5 33 90.9
THA.LOC104822465 Tarenaya hassleriana HOM05D001360 ORTHO05D001231 2.7e-07 58.5 41 75.6
Aa31LG5G23600 Aethionema arabicum HOM05D001360 ORTHO05D001231 3.5e-07 58.2 40 75.0
BcaC01g04279 Brassica carinata HOM05D001360 ORTHO05D001231 3.5e-07 58.2 40 75.0
CiPaw.14G045000 Carya illinoinensis HOM05D001360 ORTHO05D001231 3.5e-07 58.2 39 79.5
Lalb_Chr03g0040971 Lupinus albus HOM05D001360 ORTHO05D001231 3.5e-07 58.2 51 66.7
Potri.002G239500 Populus trichocarpa HOM05D001360 ORTHO05D001231 3.5e-07 58.2 40 72.5
PGR044G0829 Punica granatum HOM05D001360 ORTHO05D001231 3.5e-07 58.2 32 90.6
Sabra02G0182400 Salix brachista HOM05D000001 ORTHO05D000003 3.5e-07 58.2 37 78.4
ATR0661G007 Amborella trichopoda HOM05D001360 ORTHO05D001231 4.6e-07 57.8 51 66.7
CANSAT01G1149 Cannabis sativa HOM05D001360 ORTHO05D001231 4.6e-07 57.8 48 64.6
CDE11G0645 Ceratophyllum demersum HOM05D001360 ORTHO05D001231 4.6e-07 57.8 33 87.9
AUR62008073 Chenopodium quinoa HOM05D001360 ORTHO05D001231 4.6e-07 57.8 36 83.3
AUR62028652 Chenopodium quinoa HOM05D001360 ORTHO05D001231 4.6e-07 57.8 36 83.3
MD10G1149800 Malus domestica HOM05D001360 ORTHO05D001231 4.6e-07 57.8 46 69.6
Sed0025553 Sechium edule HOM05D001360 ORTHO05D001231 4.6e-07 57.8 40 75.0
vmacro02835 Vaccinium macrocarpon HOM05D001360 ORTHO05D001231 4.6e-07 57.8 33 87.9
BcaB03g14697 Brassica carinata HOM05D001360 ORTHO05D001231 6.1e-07 57.4 33 87.9
CARHR144130 Cardamine hirsuta HOM05D001360 ORTHO05D001231 6.1e-07 57.4 47 59.6
Aqoxy6G00986 Aquilegia oxysepala HOM05D001360 ORTHO05D001231 7.9e-07 57.0 33 87.9
ECA248G1556 Erigeron canadensis HOM05D001360 ORTHO05D001231 7.9e-07 57.0 35 82.9
Lj2P1114T30 Lonicera japonica HOM05D001360 ORTHO05D001231 7.9e-07 57.0 33 87.9
Rhsim13G0054500 Rhododendron simsii HOM05D001360 ORTHO05D001231 7.9e-07 57.0 32 90.6
SEGI_27219 Sequoiadendron giganteum HOM05D001360 ORTHO05D001231 7.9e-07 57.0 32 87.5
Sc17g0001600 Simmondsia chinensis HOM05D001360 ORTHO05D001231 7.9e-07 57.0 32 90.6
EL10Ac5g10593 Beta vulgaris HOM05D001360 ORTHO05D001231 1.0e-06 56.6 32 90.6
CSS0047701 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 1.0e-06 56.6 32 90.6
DCAR_008397 Daucus carota HOM05D001360 ORTHO05D001231 1.0e-06 56.6 32 90.6
Gohir.A07G158300 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.0e-06 56.6 40 75.0
Gorai.N002200 Gossypium raimondii HOM05D001360 ORTHO05D001231 1.0e-06 56.6 40 75.0
HanXRQChr08g0231831 Helianthus annuus HOM05D001360 ORTHO05D001231 1.0e-06 56.6 38 76.3
Manes.12G060113 Manihot esculenta HOM05D001360 ORTHO05D001231 1.0e-06 56.6 32 90.6
Psat3g151800 Pisum sativum HOM05D001360 ORTHO05D001231 1.0e-06 56.6 32 90.6
Rhsim13G0054600 Rhododendron simsii HOM05D001360 ORTHO05D001231 1.0e-06 56.6 38 76.3
Thecc.01G208800 Theobroma cacao HOM05D001360 ORTHO05D001231 1.0e-06 56.6 32 90.6
TAR362G0852 Trochodendron aralioides HOM05D001360 ORTHO05D001231 1.0e-06 56.6 36 80.6
TAR633G1941 Trochodendron aralioides HOM05D001360 ORTHO05D001231 1.0e-06 56.6 43 67.4
Zm00001eb172160 Zea mays HOM05D001360 ORTHO05D001231 1.0e-06 56.6 32 87.5
Aa31LG4G9720 Aethionema arabicum HOM05D001360 ORTHO05D001231 1.3e-06 56.2 40 72.5
Dinv10451 Davidia involucrata HOM05D001360 ORTHO05D001231 1.3e-06 56.2 37 78.4
Gohir.A11G143400 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.3e-06 56.2 31 93.5
Gohir.D11G149800 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.3e-06 56.2 31 93.5
Gorai.007G160700 Gossypium raimondii HOM05D001360 ORTHO05D001231 1.3e-06 56.2 31 93.5
MD05G1155400 Malus domestica HOM05D001360 ORTHO05D001231 1.3e-06 56.2 33 87.9
MD05G1155900 Malus domestica HOM05D001360 ORTHO05D001231 1.3e-06 56.2 33 87.9
SEGI_12504 Sequoiadendron giganteum HOM05D001360 ORTHO05D001231 1.3e-06 56.2 55 61.8
unitig_0.g1226 Utricularia gibba HOM05D001360 ORTHO05D001231 1.3e-06 56.2 32 84.4
Ciclev10017815m.g Citrus clementina HOM05D001360 ORTHO05D001231 1.8e-06 55.8 39 69.2
Migut.D00747 Erythranthe guttata HOM05D001360 ORTHO05D001231 1.8e-06 55.8 34 73.5
Gohir.D07G167900 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.8e-06 55.8 40 72.5
Os10g0178200 Oryza sativa ssp. japonica HOM05D001360 ORTHO05D001231 1.8e-06 55.8 32 87.5
HPP92_022054 Vanilla planifolia HOM05D001360 ORTHO05D001231 1.8e-06 55.8 44 72.7
Migut.D00746 Erythranthe guttata HOM05D001360 ORTHO05D001231 2.3e-06 55.5 34 76.5
SGA_v2.0_scaffold77G25308 Striga asiatica HOM05D001360 ORTHO05D001231 2.3e-06 55.5 33 84.8
MSTRG.12746 Avicennia marina HOM05D001360 ORTHO05D001231 3.0e-06 55.1 51 58.8
Duzib211G0121 Durio zibethinus HOM05D001360 ORTHO05D001231 3.9e-06 54.7 31 90.3
Migut.N00677 Erythranthe guttata HOM05D001360 ORTHO05D001231 3.9e-06 54.7 31 90.3
MBI04_g26965_MAGBIO Magnolia biondii HOM05D001360 ORTHO05D001231 3.9e-06 54.7 32 87.5
Hund09478 Selenicereus undatus HOM05D001360 ORTHO05D001231 3.9e-06 54.7 31 90.3
BcaC06g31290 Brassica carinata HOM05D001360 ORTHO05D001231 5.1e-06 54.3 41 63.4
A06p44270 Brassica napus HOM05D001360 ORTHO05D001231 5.1e-06 54.3 41 63.4
BraA06t27302Z Brassica rapa HOM05D001360 ORTHO05D001231 5.1e-06 54.3 41 63.4
Duzib138G1389 Durio zibethinus HOM05D001360 ORTHO05D001231 5.1e-06 54.3 37 78.4
Gohir.A07G090000 Gossypium hirsutum HOM05D001360 ORTHO05D001231 5.1e-06 54.3 31 87.1
Gohir.D07G094700 Gossypium hirsutum HOM05D001360 ORTHO05D001231 5.1e-06 54.3 31 87.1
Gorai.001G102000 Gossypium raimondii HOM05D001360 ORTHO05D001231 5.1e-06 54.3 31 87.1
SalBow6G3647 Salvia bowleyana HOM05D001360 ORTHO05D001231 5.1e-06 54.3 48 52.1
SalBow6G5480 Salvia bowleyana HOM05D001360 ORTHO05D001231 5.1e-06 54.3 48 52.1
BcaC06g34147 Brassica carinata HOM05D001360 ORTHO05D001231 6.7e-06 53.9 41 61.0
C07p32200 Brassica napus HOM05D001360 ORTHO05D001231 6.7e-06 53.9 41 61.0
BolC7t43759H Brassica oleracea HOM05D001360 ORTHO05D001231 6.7e-06 53.9 41 61.0
Migut.N00679 Erythranthe guttata HOM05D001360 ORTHO05D001231 8.7e-06 53.5 37 64.9
SalBow6G0146 Salvia bowleyana HOM05D001360 ORTHO05D001231 8.7e-06 53.5 37 62.2
SalBow6G6784 Salvia bowleyana HOM05D001360 ORTHO05D001231 8.7e-06 53.5 37 62.2


User provided reference genes

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