Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 6.8e-312 1073.2 500 100.0
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 9.7e-241 836.6 500 76.2
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 8.0e-235 817.0 500 74.8
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 3.0e-234 815.1 501 74.5
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 1.1e-220 770.0 482 71.8
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 5.5e-220 767.7 471 72.0
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 9.1e-215 750.4 492 69.1
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 1.6e-214 749.6 460 72.8
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 2.7e-214 748.8 436 75.7
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 2.7e-214 748.8 436 75.7
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.9e-213 745.3 462 71.6
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 5.0e-213 744.6 509 66.8
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 6.6e-213 744.2 469 71.4
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 8.6e-213 743.8 484 69.6
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 1.9e-212 742.7 433 75.8
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 4.2e-212 741.5 498 68.3
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 2.8e-211 738.8 433 75.1
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 3.6e-211 738.4 451 72.5
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 3.6e-211 738.4 484 69.4
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 3.6e-211 738.4 462 71.4
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 3.6e-211 738.4 433 75.5
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 2.3e-210 735.7 463 71.5
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 5.2e-210 734.6 483 69.8
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 1.5e-209 733.0 481 67.4
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 1.5e-209 733.0 460 70.7
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 3.4e-209 731.9 451 73.2
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 4.4e-209 731.5 433 74.6
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.3e-208 729.9 463 71.3
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 1.7e-208 729.6 433 74.6
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 3.7e-208 728.4 457 70.7
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 4.9e-208 728.0 433 74.8
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 6.3e-208 727.6 463 71.1
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 1.8e-207 726.1 433 73.4
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.8e-207 726.1 478 68.8
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 1.8e-207 726.1 433 73.7
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 2.4e-207 725.7 440 73.2
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.1e-207 724.9 457 70.2
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 7.0e-207 724.2 440 71.8
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.0e-207 724.2 500 67.2
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 9.2e-207 723.8 443 73.4
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 9.2e-207 723.8 477 68.3
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 2.0e-206 722.6 431 73.3
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 3.5e-206 721.8 455 71.2
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 3.5e-206 721.8 491 68.2
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 4.5e-206 721.5 481 66.7
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 4.5e-206 721.5 486 68.3
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 1.0e-205 720.3 474 68.6
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 1.7e-205 719.5 498 66.3
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 8.6e-205 717.2 428 75.2
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 8.6e-205 717.2 443 71.8
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.1e-204 716.8 433 71.6
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 1.1e-204 716.8 451 71.2
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 2.5e-204 715.7 475 69.3
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 1.6e-203 713.0 430 73.5
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 6.1e-203 711.1 530 63.6
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 6.1e-203 711.1 430 72.1
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 3.1e-202 708.8 433 71.4
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 3.1e-202 708.8 430 71.9
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 3.1e-202 708.8 490 65.9
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 6.8e-202 707.6 431 72.4
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 2.0e-201 706.1 476 67.4
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 5.8e-201 704.5 484 67.4
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.4e-200 701.0 446 69.1
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 1.9e-199 699.5 430 71.6
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 3.2e-199 698.7 433 71.6
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 3.2e-199 698.7 457 68.9
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 7.0e-199 697.6 463 68.3
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.2e-198 696.8 487 65.9
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.6e-198 696.4 433 71.4
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 2.0e-198 696.0 499 63.3
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 2.7e-198 695.7 500 63.8
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 6.0e-198 694.5 428 71.3
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 6.0e-198 694.5 481 64.9
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 7.8e-198 694.1 482 64.7
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 1.0e-197 693.7 487 63.2
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.7e-197 693.0 488 64.8
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 1.7e-197 693.0 488 64.8
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 6.6e-197 691.0 467 69.0
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.9e-196 689.5 491 63.7
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 2.5e-196 689.1 490 63.9
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 9.5e-196 687.2 537 62.0
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 9.5e-196 687.2 435 69.7
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 1.2e-195 686.8 477 64.6
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 1.2e-195 686.8 477 64.6
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 8.0e-195 684.1 499 62.9
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 5.2e-194 681.4 434 68.7
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 5.2e-194 681.4 499 63.9
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 3.7e-192 675.2 504 62.9
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 4.9e-192 674.9 432 69.7
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 9.2e-191 670.6 430 68.8
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.7e-190 669.1 530 60.4
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 2.8e-187 659.1 437 67.7
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 6.8e-186 654.4 518 59.1
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.4e-185 652.1 461 61.8
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 1.0e-181 640.6 414 70.5
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 7.3e-180 634.4 436 66.5
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 2.4e-178 629.4 385 72.5
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 2.4e-178 629.4 385 72.5
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 8.9e-178 627.5 383 72.3
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 3.5e-174 615.5 427 65.8
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 3.0e-173 612.5 441 63.7
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 8.1e-171 604.4 385 71.2
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 5.3e-170 601.7 433 65.4
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 4.9e-168 595.1 366 72.4
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 2.7e-166 589.3 423 62.9
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 9.6e-164 580.9 371 70.6
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.1e-162 577.4 433 60.3
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.4e-159 566.2 330 72.7
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 4.2e-159 565.5 413 64.4
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 7.1e-159 564.7 434 57.4
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 1.6e-158 563.5 430 61.6
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 3.7e-155 552.4 479 54.7
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 2.6e-153 546.2 523 52.0
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.4e-146 523.9 446 53.8
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 1.2e-145 520.8 401 57.4
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 6.7e-141 505.0 431 57.3
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 2.6e-137 493.0 326 66.0
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 2.5e-132 476.5 423 54.4
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.0e-128 464.5 275 73.1
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.6e-121 439.9 254 76.8
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 3.5e-105 386.3 451 41.9
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 9.8e-100 368.2 223 70.9
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 6.2e-78 295.8 189 68.8
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 1.7e-75 287.7 162 77.2
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 4.7e-70 269.6 429 38.2
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.2e-65 255.0 420 36.4
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.6e-60 237.3 163 63.2
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.6e-55 218.8 180 59.4
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 6.9e-53 212.6 110 80.9
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 1.7e-51 208.0 151 64.2
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.9e-48 196.8 153 54.9
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 4.2e-42 176.8 122 63.9
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 1.9e-39 167.9 109 65.1
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.0e-35 155.6 112 63.4
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 8.4e-35 152.5 190 42.6
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 5.1e-32 143.3 186 44.6
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 4.2e-18 97.1 60 66.7
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.9e-16 90.5 59 64.4
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.4e-08 65.5 115 38.3


User provided reference genes

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