Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G1459 Salvia bowleyana HOM05D001649 ORTHO05D023222 1.4e-54 216.1 109 100.0
SalBow4G0027 Salvia bowleyana HOM05D001649 ORTHO05D023222 4.1e-43 177.9 97 93.8
SalBow4G0996 Salvia bowleyana HOM05D001649 ORTHO05D002915 3.3e-37 158.3 105 81.0
MSTRG.8786 Avicennia marina HOM05D001649 ORTHO05D002915 1.3e-36 156.4 105 77.1
SGA_v2.0_scaffold2G01103 Striga asiatica HOM05D001649 ORTHO05D002915 7.7e-34 147.1 105 76.2
MSTRG.27156 Avicennia marina HOM05D001649 ORTHO05D002915 3.2e-32 141.7 105 70.5
SGA_v2.0_scaffold221G42749 Striga asiatica HOM05D001649 ORTHO05D002915 5.5e-32 141.0 105 70.5
Migut.F00406 Erythranthe guttata HOM05D001649 ORTHO05D002915 1.8e-27 125.9 83 79.5
Oeu030153.1 Olea europaea HOM05D001649 ORTHO05D002915 1.8e-27 125.9 105 72.4
Cc02_g03680 Coffea canephora HOM05D001649 ORTHO05D002915 8.9e-22 107.1 104 60.6
Nitab4.5_0000072g0030 Nicotiana tabacum HOM05D001649 ORTHO05D002915 1.5e-21 106.3 105 57.1
Nitab4.5_0001757g0010 Nicotiana tabacum HOM05D001649 ORTHO05D002915 2.6e-21 105.5 105 56.2
CAN.G1283.3 Capsicum annuum HOM05D001649 ORTHO05D002915 4.9e-20 101.3 105 59.0
PGSC0003DMG400007560 Solanum tuberosum HOM05D001649 ORTHO05D002915 6.3e-20 100.9 105 59.0
Solyc03g006920.2 Solanum lycopersicum HOM05D001649 ORTHO05D002915 1.4e-19 99.8 105 59.0
Sopen03g002920 Solanum pennellii HOM05D001649 ORTHO05D002915 1.4e-19 99.8 105 59.0
Dinv28515 Davidia involucrata HOM05D001649 ORTHO05D002915 2.4e-19 99.0 105 55.2
Manes.06G140400 Manihot esculenta HOM05D001649 ORTHO05D002915 5.4e-19 97.8 105 55.2
Oeu042592.2 Olea europaea HOM05D001649 ORTHO05D002915 7.0e-19 97.4 102 58.8
Potri.012G131900 Populus trichocarpa HOM05D001649 ORTHO05D002915 7.0e-19 97.4 105 54.3
Sabra12G0099200 Salix brachista HOM05D001649 ORTHO05D002915 1.6e-18 96.3 105 53.3
Oeu022524.1 Olea europaea HOM05D001649 ORTHO05D002915 3.5e-18 95.1 102 57.8
Duzib068G1169 Durio zibethinus HOM05D001649 ORTHO05D002915 2.3e-17 92.4 104 54.8
COL.COLO4_14214 Corchorus olitorius HOM05D001649 ORTHO05D002915 3.8e-17 91.7 105 54.3
Potri.015G134100 Populus trichocarpa HOM05D001649 ORTHO05D002915 3.8e-17 91.7 103 52.4
Sabra15G0146300 Salix brachista HOM05D001649 ORTHO05D002915 5.0e-17 91.3 103 50.5
Peaxi162Scf00192g00719 Petunia axillaris HOM05D001649 ORTHO05D002915 8.6e-17 90.5 108 52.8
Sed0014449 Sechium edule HOM05D001649 ORTHO05D002915 8.6e-17 90.5 105 53.3
Lj1A986T54 Lonicera japonica HOM05D001649 ORTHO05D002915 1.5e-16 89.7 96 57.3
Gohir.D09G044600 Gossypium hirsutum HOM05D001649 ORTHO05D002915 1.9e-16 89.4 105 51.4
Gorai.006G066000 Gossypium raimondii HOM05D001649 ORTHO05D002915 1.9e-16 89.4 105 51.4
Hma1.2p1_0099F.1_g048790 Hydrangea macrophylla HOM05D001649 ORTHO05D002915 1.9e-16 89.4 105 48.6
MELO3C006853.2 Cucumis melo HOM05D001649 ORTHO05D002915 4.3e-16 88.2 105 50.5
CsaV3_3G016550 Cucumis sativus L. HOM05D001649 ORTHO05D002915 4.3e-16 88.2 105 50.5
FvH4_7g28580 Fragaria vesca HOM05D001649 ORTHO05D002915 9.5e-16 87.0 103 54.4
FAN06G1950 Fragaria x ananassa HOM05D001649 ORTHO05D002915 9.5e-16 87.0 103 54.4
FAN06G2708 Fragaria x ananassa HOM05D001649 ORTHO05D002915 9.5e-16 87.0 103 54.4
FAN10G1952 Fragaria x ananassa HOM05D001649 ORTHO05D002915 9.5e-16 87.0 103 54.4
Gohir.A09G043200 Gossypium hirsutum HOM05D001649 ORTHO05D002915 9.5e-16 87.0 105 52.4
FAN03G0865 Fragaria x ananassa HOM05D001649 ORTHO05D002915 1.2e-15 86.7 103 54.4
FAN01G0326 Fragaria x ananassa HOM05D001649 ORTHO05D002915 1.6e-15 86.3 103 54.4
FAN03G2171 Fragaria x ananassa HOM05D001649 ORTHO05D002915 1.6e-15 86.3 103 54.4
DCAR_009412 Daucus carota HOM05D001649 ORTHO05D002915 2.1e-15 85.9 108 52.8
CSS0048703 Camellia sinensis var. sinensis HOM05D001649 ORTHO05D002915 2.8e-15 85.5 103 52.4
Prupe.2G285800 Prunus persica HOM05D001649 ORTHO05D002915 2.8e-15 85.5 105 53.3
GSVIVG01027564001 Vitis vinifera HOM05D001649 ORTHO05D002915 1.0e-14 83.6 105 48.6
Thecc.03G165600 Theobroma cacao HOM05D001649 ORTHO05D002915 1.4e-14 83.2 104 51.9
Aqoxy7G00519 Aquilegia oxysepala HOM05D001649 ORTHO05D002915 1.8e-14 82.8 105 49.5
RcHm_v2.0_Chr1g0375991 Rosa chinensis HOM05D001649 ORTHO05D002915 1.8e-14 82.8 104 54.8
Gohir.D12G263500 Gossypium hirsutum HOM05D001649 ORTHO05D002915 2.3e-14 82.4 104 51.9
Gorai.008G282500 Gossypium raimondii HOM05D001649 ORTHO05D002915 2.3e-14 82.4 104 51.9
Nn6g34342 Nelumbo nucifera HOM05D001649 ORTHO05D002915 2.3e-14 82.4 96 54.2
MD12G1112300 Malus domestica HOM05D001649 ORTHO05D002915 3.0e-14 82.0 104 52.9
Gohir.A12G263000 Gossypium hirsutum HOM05D001649 ORTHO05D002915 5.2e-14 81.3 104 51.0
GSVIVG01018462001 Vitis vinifera HOM05D001649 ORTHO05D002915 6.8e-14 80.9 105 51.4
Dinv08004 Davidia involucrata HOM05D000015 ORTHO05D002915 1.2e-13 80.1 93 55.9
ECA248G3849 Erigeron canadensis HOM05D001649 ORTHO05D002915 1.5e-13 79.7 105 50.5
PGR142G1763 Punica granatum HOM05D001649 ORTHO05D002915 2.0e-13 79.3 103 49.5
Rhsim03G0173600 Rhododendron simsii HOM05D001649 ORTHO05D002915 2.0e-13 79.3 105 45.7
Lsat_1_v5_gn_2_130000 Lactuca sativa HOM05D001649 ORTHO05D002915 3.4e-13 78.6 103 50.5
Lj9C573T7 Lonicera japonica HOM05D001649 ORTHO05D002915 7.5e-13 77.4 105 50.5
CSS0009486 Camellia sinensis var. sinensis HOM05D001649 ORTHO05D002915 9.8e-13 77.0 105 49.5
Dinv32400 Davidia involucrata HOM05D001649 ORTHO05D002915 9.8e-13 77.0 105 48.6
Nn1g01149 Nelumbo nucifera HOM05D001649 ORTHO05D002915 1.3e-12 76.6 95 49.5
HanXRQChr14g0461871 Helianthus annuus HOM05D001649 ORTHO05D002915 4.9e-12 74.7 103 47.6
Actinidia03092 Actinidia chinensis HOM05D001649 ORTHO05D002915 6.4e-12 74.3 85 54.1
Actinidia14210 Actinidia chinensis HOM05D001649 ORTHO05D002915 6.4e-12 74.3 85 54.1
TAR375G0908 Trochodendron aralioides HOM05D001649 ORTHO05D002915 6.4e-12 74.3 88 52.3
Carub.0004s2823 Capsella rubella HOM05D001649 ORTHO05D002915 1.4e-11 73.2 109 49.5
AT2G45590 Arabidopsis thaliana HOM05D001649 ORTHO05D002915 5.4e-11 71.2 82 51.2
FvH4_5g33551 Fragaria vesca HOM05D007346 ORTHO05D009044 5.4e-11 71.2 71 56.3
TWI23G1008 Tripterygium wilfordii HOM05D001649 ORTHO05D002915 5.4e-11 71.2 105 45.7
AL8G26060 Arabidopsis lyrata HOM05D001649 ORTHO05D002915 7.0e-11 70.9 109 44.0
HanXRQChr07g0206711 Helianthus annuus HOM05D001649 ORTHO05D002915 7.0e-11 70.9 99 47.5
CSS0049744 Camellia sinensis var. sinensis HOM05D001649 ORTHO05D002915 9.2e-11 70.5 89 50.6
CsaV3_6G006050 Cucumis sativus L. HOM05D001649 ORTHO05D002915 9.2e-11 70.5 91 50.5
THA.LOC104811501 Tarenaya hassleriana HOM05D001649 ORTHO05D002915 9.2e-11 70.5 87 50.6
Actinidia32917 Actinidia chinensis HOM05D001649 ORTHO05D023222 1.2e-10 70.1 73 53.4
AL4G44760 Arabidopsis lyrata HOM05D001649 ORTHO05D002915 1.2e-10 70.1 82 50.0
CARHR264650 Cardamine hirsuta HOM05D001649 ORTHO05D002915 1.2e-10 70.1 108 44.4
QL12p039040 Quercus lobata HOM05D001649 ORTHO05D002915 1.2e-10 70.1 105 47.6
CARHR232800 Cardamine hirsuta HOM05D001649 ORTHO05D002915 1.6e-10 69.7 100 43.0
ClCG06G000260 Citrullus lanatus HOM05D001649 ORTHO05D002915 1.6e-10 69.7 88 52.3
MELO3C022512.2 Cucumis melo HOM05D001649 ORTHO05D002915 1.6e-10 69.7 91 49.5
Sp7g23410 Schrenkiella parvula HOM05D001649 ORTHO05D002915 1.6e-10 69.7 89 46.1
Sed0009734 Sechium edule HOM05D001649 ORTHO05D002915 1.6e-10 69.7 107 43.9
Aa31LG3G8220 Aethionema arabicum HOM05D001649 ORTHO05D002915 2.7e-10 68.9 107 43.0
AL7G27740 Arabidopsis lyrata HOM05D001649 ORTHO05D002915 2.7e-10 68.9 108 42.6
Ah.05g175500 Amaranthus hybridus HOM05D001649 ORTHO05D002915 4.6e-10 68.2 112 42.0
AT5G51770 Arabidopsis thaliana HOM05D001649 ORTHO05D002915 4.6e-10 68.2 108 43.5
CDE02G2657 Ceratophyllum demersum HOM05D001649 ORTHO05D002915 4.6e-10 68.2 91 47.3
Peaxi162Scf00988g00033 Petunia axillaris HOM05D001649 ORTHO05D002915 4.6e-10 68.2 105 44.8
Atru.chr5.358 Acer truncatum HOM05D001649 ORTHO05D002915 6.0e-10 67.8 73 50.7
Ciclev10004535m.g Citrus clementina HOM05D001649 ORTHO05D002915 6.0e-10 67.8 89 49.4
Gohir.D11G087200 Gossypium hirsutum HOM05D001649 ORTHO05D002915 6.0e-10 67.8 79 50.6
Gorai.007G093100 Gossypium raimondii HOM05D001649 ORTHO05D002915 6.0e-10 67.8 79 50.6
Oeu026239.1 Olea europaea HOM05D001649 ORTHO05D002915 7.8e-10 67.4 84 46.4
PSO478G0436 Papaver somniferum HOM05D001649 ORTHO05D002915 7.8e-10 67.4 106 44.3
MSTRG.20772 Avicennia marina HOM05D001649 ORTHO05D002915 1.3e-09 66.6 81 49.4
Gohir.A11G083100 Gossypium hirsutum HOM05D001649 ORTHO05D002915 1.7e-09 66.2 79 49.4
Nitab4.5_0005340g0010 Nicotiana tabacum HOM05D001649 ORTHO05D002915 1.7e-09 66.2 107 43.0
SHI13844 Sapria himalayana HOM05D001649 ORTHO05D002915 1.7e-09 66.2 74 54.1
CARHR140810 Cardamine hirsuta HOM05D001649 ORTHO05D002915 2.3e-09 65.9 109 46.8
Actinidia09571 Actinidia chinensis HOM05D001649 ORTHO05D002915 3.0e-09 65.5 105 42.9
AT4G25390 Arabidopsis thaliana HOM05D001649 ORTHO05D002915 3.0e-09 65.5 99 41.4
BcaC02g07080 Brassica carinata HOM05D001649 ORTHO05D002915 3.0e-09 65.5 104 43.3
C04p71730 Brassica napus HOM05D001649 ORTHO05D002915 3.0e-09 65.5 104 43.3
BolC4t28672H Brassica oleracea HOM05D001649 ORTHO05D002915 3.0e-09 65.5 104 43.3
Cpa.g.sc18.157 Carica papaya HOM05D001649 ORTHO05D002915 3.0e-09 65.5 113 46.9
Thhalv10015950m.g Eutrema salsugineum HOM05D001649 ORTHO05D002915 3.0e-09 65.5 108 42.6
Thhalv10001343m.g Eutrema salsugineum HOM05D001649 ORTHO05D002915 3.9e-09 65.1 99 46.5
EL10Ac3g05758 Beta vulgaris HOM05D001649 ORTHO05D002915 5.0e-09 64.7 84 47.6
DCAR_006885 Daucus carota HOM05D001649 ORTHO05D002915 5.0e-09 64.7 107 43.9
TWI59G0625 Tripterygium wilfordii HOM05D001649 ORTHO05D002915 5.0e-09 64.7 82 51.2
CiPaw.03G098800 Carya illinoinensis HOM05D001649 ORTHO05D002915 6.6e-09 64.3 105 42.9
PSO782G1909 Papaver somniferum HOM05D001649 ORTHO05D002915 6.6e-09 64.3 99 43.4
Sp4g27640 Schrenkiella parvula HOM05D001649 ORTHO05D002915 6.6e-09 64.3 109 43.1
THA.LOC104817262 Tarenaya hassleriana HOM05D001649 ORTHO05D002915 6.6e-09 64.3 84 50.0
Nitab4.5_0002436g0080 Nicotiana tabacum HOM05D001649 ORTHO05D002915 8.6e-09 63.9 96 43.8
BcaB06g29412 Brassica carinata HOM05D001649 ORTHO05D002915 1.1e-08 63.5 108 43.5
BraA04t18853Z Brassica rapa HOM05D001649 ORTHO05D002915 1.1e-08 63.5 100 45.0
Potri.014G072900 Populus trichocarpa HOM05D001649 ORTHO05D002915 1.1e-08 63.5 86 48.8
BolC7t45913H Brassica oleracea HOM05D001649 ORTHO05D002915 1.5e-08 63.2 107 41.1
CAN.G1561.13 Capsicum annuum HOM05D001649 ORTHO05D002915 1.5e-08 63.2 108 42.6
HanXRQChr06g0169251 Helianthus annuus HOM05D001649 ORTHO05D002915 1.5e-08 63.2 93 45.2
Sp6g13990 Schrenkiella parvula HOM05D001649 ORTHO05D002915 1.5e-08 63.2 98 42.9
BcaC06g32814 Brassica carinata HOM05D001649 ORTHO05D002915 1.9e-08 62.8 96 41.7
Ciclev10019199m.g Citrus clementina HOM05D001649 ORTHO05D002915 1.9e-08 62.8 73 45.2
TWI23G1067 Tripterygium wilfordii HOM05D001649 ORTHO05D002915 1.9e-08 62.8 82 48.8
A04p33920 Brassica napus HOM05D001649 ORTHO05D002915 2.5e-08 62.4 77 48.1
C07p54270 Brassica napus HOM05D001649 ORTHO05D002915 2.5e-08 62.4 106 41.5
Cc02_g36360 Coffea canephora HOM05D001649 ORTHO05D002915 2.5e-08 62.4 107 44.9
COL.COLO4_12593 Corchorus olitorius HOM05D001649 ORTHO05D002915 2.5e-08 62.4 74 48.6
Solyc01g094020.3 Solanum lycopersicum HOM05D001649 ORTHO05D002915 2.5e-08 62.4 108 41.7
Lj2g0005098 Lotus japonicus HOM05D001649 ORTHO05D002915 3.3e-08 62.0 65 58.5
vmacro09875 Vaccinium macrocarpon HOM05D001649 ORTHO05D002915 3.3e-08 62.0 55 65.5
Duzib138G1951 Durio zibethinus HOM05D001649 ORTHO05D002915 4.3e-08 61.6 67 50.7
Sed0012900 Sechium edule HOM05D001649 ORTHO05D002915 4.3e-08 61.6 107 43.0
PGSC0003DMG400000140 Solanum tuberosum HOM05D001649 ORTHO05D002915 4.3e-08 61.6 96 41.7
Lsat_1_v5_gn_7_6720 Lactuca sativa HOM05D001649 ORTHO05D002915 5.6e-08 61.2 110 41.8
PGR042G2386 Punica granatum HOM05D001649 ORTHO05D002915 5.6e-08 61.2 85 48.2
ATR0661G458 Amborella trichopoda HOM05D001649 ORTHO05D002915 7.3e-08 60.8 104 40.4
A03p55960 Brassica napus HOM05D001649 ORTHO05D002915 9.5e-08 60.5 100 41.0
ECA236G2921 Erigeron canadensis HOM05D001649 ORTHO05D002915 9.5e-08 60.5 80 45.0
Sopen01g037840 Solanum pennellii HOM05D001649 ORTHO05D002915 9.5e-08 60.5 96 40.6
SGA_v2.0_scaffold95G28884 Striga asiatica HOM05D001649 ORTHO05D002915 9.5e-08 60.5 68 48.5
Potri.002G150800 Populus trichocarpa HOM05D001649 ORTHO05D002915 1.2e-07 60.1 87 47.1
HPP92_001550 Vanilla planifolia HOM05D001649 ORTHO05D002915 1.6e-07 59.7 67 43.3
Aa31LG1G27080 Aethionema arabicum HOM05D001649 ORTHO05D002915 2.1e-07 59.3 86 45.3
AUR62016074 Chenopodium quinoa HOM05D001649 ORTHO05D002915 2.1e-07 59.3 105 41.9
Lalb_Chr07g0189541 Lupinus albus HOM05D001649 ORTHO05D002915 2.1e-07 59.3 68 48.5
arahy.Tifrunner.gnm1.ann1.I81MIY Arachis hypogaea HOM05D001649 ORTHO05D002915 2.8e-07 58.9 82 45.1
arahy.Tifrunner.gnm1.ann1.W1M1TV Arachis hypogaea HOM05D001649 ORTHO05D002915 2.8e-07 58.9 82 45.1
BraA03t14668Z Brassica rapa HOM05D001649 ORTHO05D002915 2.8e-07 58.9 108 39.8
CANSAT56G3690 Cannabis sativa HOM05D001649 ORTHO05D002915 2.8e-07 58.9 101 40.6
Eucgr.K00180 Eucalyptus grandis HOM05D001649 ORTHO05D002915 2.8e-07 58.9 88 44.3
HPP92_003299 Vanilla planifolia HOM05D001649 ORTHO05D002915 2.8e-07 58.9 90 44.4
Eucgr.E01348 Eucalyptus grandis HOM05D001649 ORTHO05D002915 4.7e-07 58.2 79 45.6
Thecc.04G214000 Theobroma cacao HOM05D000021 ORTHO05D000010 6.2e-07 57.8 104 36.5
Thecc.04G214200 Theobroma cacao HOM05D000021 ORTHO05D000010 6.2e-07 57.8 104 36.5
FAN10G1360 Fragaria x ananassa HOM05D001649 ORTHO05D002915 8.0e-07 57.4 127 37.0
Glyma.03G020700 Glycine max HOM05D001649 ORTHO05D002915 8.0e-07 57.4 77 41.6
Glyma.07G082600 Glycine max HOM05D001649 ORTHO05D002915 8.0e-07 57.4 77 42.9
Phvul.010G086600 Phaseolus vulgaris HOM05D001649 ORTHO05D002915 8.0e-07 57.4 77 44.2
VMungo0331G0090 Vigna mungo HOM05D001649 ORTHO05D002915 8.0e-07 57.4 77 44.2
Sabra14G0052100 Salix brachista HOM05D001649 ORTHO05D002915 1.1e-06 57.0 85 45.9
Lj3g0003838 Lotus japonicus HOM05D001649 ORTHO05D002915 1.4e-06 56.6 62 50.0
QL08p051566 Quercus lobata HOM05D001649 ORTHO05D002915 1.8e-06 56.2 63 50.8
SMO239G0032 Selaginella moellendorffii HOM05D001649 ORTHO05D007966 1.8e-06 56.2 87 40.2
BcaC01g06138 Brassica carinata HOM05D001649 ORTHO05D002915 2.3e-06 55.8 108 40.7
C03p18860 Brassica napus HOM05D001649 ORTHO05D002915 2.3e-06 55.8 108 40.7
BolC3t14277H Brassica oleracea HOM05D001649 ORTHO05D002915 2.3e-06 55.8 108 40.7
Sabra02G0119200 Salix brachista HOM05D001649 ORTHO05D002915 2.3e-06 55.8 107 42.1
CiPaw.02G165200 Carya illinoinensis HOM05D001649 ORTHO05D002915 3.1e-06 55.5 63 49.2
Carub.0008s1179 Capsella rubella HOM05D001649 ORTHO05D002915 4.0e-06 55.1 99 41.4
Thecc.01G372500 Theobroma cacao HOM05D001649 ORTHO05D002915 4.0e-06 55.1 51 60.8
Aa31sc16G30 Aethionema arabicum HOM05D001649 ORTHO05D002915 5.2e-06 54.7 77 48.1
Ca_23819_v3 Cicer arietinum L. HOM05D001649 ORTHO05D002915 5.2e-06 54.7 64 46.9
MD02G1198700 Malus domestica HOM05D001649 ORTHO05D002915 6.8e-06 54.3 97 40.2
Pp3c3_8250 Physcomitrium patens HOM05D001649 ORTHO05D007966 6.8e-06 54.3 98 34.7
A03p16030 Brassica napus HOM05D001649 ORTHO05D002915 8.9e-06 53.9 108 39.8
BraA03t10894Z Brassica rapa HOM05D001649 ORTHO05D002915 8.9e-06 53.9 108 39.8
DCAR_018137 Daucus carota HOM05D001649 ORTHO05D002915 8.9e-06 53.9 84 42.9
SalBow7G4433 Salvia bowleyana HOM05D001649 ORTHO05D002915 8.9e-06 53.9 69 44.9
Sc25g0000240 Simmondsia chinensis HOM05D001649 ORTHO05D002915 8.9e-06 53.9 104 39.4
TPR.G16898 Trifolium pratense HOM05D000026 ORTHO05D000127 8.9e-06 53.9 84 35.7


User provided reference genes

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