Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 2.2e-192 677.2 838 100.0
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 2.5e-95 354.8 826 80.1
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 1.0e-85 322.8 844 76.7
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 8.0e-70 270.0 844 75.7
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 5.2e-69 267.3 258 55.8
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 8.9e-69 266.5 258 55.8
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 7.0e-66 256.9 858 72.7
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 1.3e-64 252.7 258 53.5
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 3.0e-64 251.5 891 70.3
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 8.6e-64 250.0 245 55.1
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 3.3e-63 248.1 243 56.0
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 3.3e-63 248.1 757 80.1
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 2.8e-62 245.0 243 53.9
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 6.2e-62 243.8 254 52.0
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 6.2e-62 243.8 757 79.8
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 8.0e-62 243.4 257 52.1
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 5.2e-61 240.7 245 54.3
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.9e-61 240.0 255 54.1
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 8.9e-61 240.0 261 50.6
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 1.2e-60 239.6 742 79.6
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 1.5e-60 239.2 260 51.9
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 2.6e-60 238.4 714 83.1
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 3.4e-60 238.0 757 79.1
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 7.5e-60 236.9 255 52.9
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 2.2e-59 235.3 235 54.5
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 4.9e-59 234.2 255 54.1
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 1.1e-58 233.0 260 52.3
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 1.4e-58 232.6 261 50.6
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 1.2e-57 229.6 252 50.8
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-56 226.1 741 81.9
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-56 226.1 741 81.9
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 2.3e-56 225.3 278 49.6
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 5.1e-56 224.2 844 72.5
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 5.1e-56 224.2 251 53.8
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.1e-55 223.0 200 58.0
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 1.1e-55 223.0 248 50.4
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 2.5e-55 221.9 248 50.0
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 3.3e-55 221.5 211 55.9
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 3.6e-54 218.0 240 54.2
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 8.1e-54 216.9 189 59.3
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 8.1e-54 216.9 246 49.2
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 1.1e-53 216.5 202 56.9
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-53 216.5 264 49.6
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 1.4e-53 216.1 253 50.6
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.3e-53 215.3 200 56.5
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 5.2e-53 214.2 220 52.3
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 1.2e-52 213.0 195 56.9
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.2e-52 213.0 715 81.7
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.5e-52 212.6 173 64.2
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 4.4e-52 211.1 244 49.2
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 9.9e-52 209.9 247 49.0
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 9.9e-52 209.9 252 48.8
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 1.3e-51 209.5 197 54.8
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 3.7e-51 208.0 228 51.8
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 3.7e-51 208.0 165 64.2
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 6.4e-51 207.2 199 54.3
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 8.3e-51 206.8 250 48.4
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.4e-50 206.1 200 54.0
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.9e-50 205.7 170 60.0
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 1.9e-50 205.7 252 48.0
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 4.1e-50 204.5 219 50.7
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 4.1e-50 204.5 166 61.4
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.6e-49 202.6 219 50.2
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.7e-49 201.8 170 60.0
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.0e-48 199.9 210 54.8
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.0e-48 199.9 263 45.6
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 1.0e-48 199.9 191 53.9
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 1.7e-48 199.1 260 45.8
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 1.7e-48 199.1 250 46.8
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 6.6e-48 197.2 262 46.6
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 2.5e-47 195.3 853 70.3
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 3.3e-47 194.9 212 50.5
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 4.3e-47 194.5 213 49.3
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 7.3e-47 193.7 262 45.4
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.5e-47 193.4 185 56.8
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 8.1e-46 190.3 234 49.1
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 1.1e-45 189.9 205 51.2
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 4.0e-45 188.0 259 44.0
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.9e-45 186.8 205 51.7
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.5e-44 186.0 183 53.6
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.7e-43 182.6 204 53.4
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 1.4e-42 179.5 217 48.8
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.4e-42 178.7 230 47.0
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.6e-41 176.0 195 50.3
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 2.3e-40 172.2 209 48.3
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 3.3e-39 168.3 205 48.3
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.3e-39 167.9 141 63.8
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.6e-38 166.0 120 70.0
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 2.8e-38 165.2 156 53.8
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 4.7e-38 164.5 210 44.8
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 1.4e-37 162.9 236 44.1
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 2.4e-37 162.2 158 51.9
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 2.4e-37 162.2 181 48.6
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 2.4e-37 162.2 175 49.1
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.5e-36 159.5 116 67.2
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 3.4e-36 158.3 251 42.6
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 4.4e-36 157.9 176 48.9
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 5.8e-36 157.5 107 73.8
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.6e-36 157.1 130 54.6
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 2.2e-35 155.6 221 44.3
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 8.4e-35 153.7 186 47.3
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 8.4e-35 153.7 139 55.4
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 8.4e-35 153.7 139 55.4
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 8.4e-35 153.7 201 44.8
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 1.6e-33 149.4 210 42.4
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.7e-33 148.7 173 50.9
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 1.1e-31 143.3 178 44.9
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 5.6e-31 141.0 170 44.7
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 7.3e-31 140.6 215 41.4
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.8e-30 138.7 188 42.6
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 3.6e-30 138.3 160 39.4
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 4.8e-30 137.9 151 41.7
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 3.4e-28 131.7 218 39.4
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 5.8e-28 131.0 217 39.6
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 5.8e-28 131.0 135 45.9
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 3.8e-27 128.3 156 40.4
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.2e-26 124.8 155 39.4
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 9.3e-26 123.6 164 39.0
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 2.7e-25 122.1 128 47.7
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 6.0e-25 120.9 175 41.1
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 2.3e-24 119.0 124 47.6
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 3.0e-24 118.6 172 41.3
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 1.5e-23 116.3 175 36.6
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 2.1e-22 112.5 174 39.7
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 9.9e-20 103.6 152 34.2
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 4.9e-19 101.3 136 47.8
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 3.0e-16 92.0 150 36.0
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 6.7e-16 90.9 131 38.9
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 2.6e-12 79.0 157 38.2
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 3.9e-08 65.1 131 29.8
Aa31LG8G12930 Aethionema arabicum HOM05D003056 ORTHO05D003422 1.9e-07 62.8 115 30.4
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 3.3e-07 62.0 45 71.1
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 1.3e-06 60.1 131 28.2
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 1.6e-06 59.7 154 26.0
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 3.7e-06 58.5 174 23.0
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 3.7e-06 58.5 174 24.7
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 6.3e-06 57.8 149 26.8
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 6.3e-06 57.8 140 26.4
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 8.2e-06 57.4 174 24.1


User provided reference genes

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