Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 2031.5 1135 100.0
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1574.3 1093 79.2
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1544.3 1146 75.7
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1478.4 1099 76.5
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1379.4 1087 71.8
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1373.2 1091 70.4
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1371.3 1105 69.7
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1368.6 1143 67.3
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1355.9 1141 67.1
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1351.7 1097 70.6
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1344.7 1161 66.0
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1343.6 1024 69.9
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1341.3 1105 68.8
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1340.1 1089 68.8
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1324.3 1099 66.7
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1306.6 1096 68.1
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1300.4 1017 67.7
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1300.0 1099 65.7
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1297.0 1075 66.5
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1297.0 991 68.9
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1289.6 1097 65.0
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1289.2 1097 65.9
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1289.2 1097 65.9
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1284.2 1136 62.9
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1283.1 1087 67.9
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1282.7 1097 67.5
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1280.4 1094 64.7
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1278.5 1093 65.7
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1277.7 1093 66.1
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1276.2 1093 66.7
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1274.2 1105 66.6
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1274.2 1094 65.2
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1274.2 1095 66.9
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1272.7 1086 66.1
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1272.7 1083 66.2
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1271.9 1084 66.4
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1271.5 1105 64.4
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1271.1 1091 67.0
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1269.6 1046 68.7
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1267.7 1087 65.6
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1267.3 1101 67.0
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1265.0 1124 63.3
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1264.2 1094 66.3
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1263.1 1130 64.2
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1263.1 918 70.8
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1261.5 1092 64.2
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1260.0 1077 63.6
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1259.2 1091 67.2
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1259.2 1093 68.0
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1259.2 1093 65.3
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1255.0 1132 64.2
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1252.3 1124 64.1
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1251.9 1135 63.6
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1249.6 919 69.7
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1247.6 1108 65.3
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1247.6 919 69.7
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1247.3 1111 62.4
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1247.3 919 69.7
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1246.5 1148 64.0
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1243.4 1094 64.8
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1239.6 929 68.4
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1238.0 1104 66.0
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1237.6 1088 64.4
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1234.9 1087 64.4
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1229.9 1093 65.1
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1229.2 1090 65.1
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1223.8 1092 64.2
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1223.0 1091 64.4
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1223.0 990 65.6
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1222.6 1117 63.8
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1218.0 1049 62.4
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1209.9 1103 61.6
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1208.4 1042 66.2
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1200.3 1098 62.3
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1198.0 990 63.9
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1196.4 1092 61.0
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1195.6 990 63.1
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1194.5 994 64.3
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1194.5 1199 60.3
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1194.5 1089 60.8
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1192.2 990 62.6
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1189.5 919 67.0
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1183.3 963 63.9
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1179.9 1117 62.4
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1174.1 996 62.6
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1174.1 996 62.6
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1174.1 1056 61.6
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1172.9 996 62.4
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1172.9 996 62.4
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1169.1 1090 60.4
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1164.8 1077 60.3
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1160.2 933 64.3
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1153.3 946 65.3
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1143.6 1087 60.3
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 0.0e+00 1111.3 1122 60.3
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1110.5 1205 55.2
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1106.7 919 63.8
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1101.7 930 62.4
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 5.5e-300 1034.6 929 57.6
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 6.1e-299 1031.2 1093 52.7
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 2.0e-297 1026.2 986 57.2
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 1.2e-289 1000.3 722 72.3
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 3.3e-289 998.8 720 72.2
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 1.8e-282 976.5 920 55.8
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 2.3e-250 869.8 706 65.9
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 1.4e-231 807.4 794 53.5
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 3.6e-227 792.7 659 62.8
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 6.0e-222 775.4 672 61.5
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 7.9e-222 775.0 578 70.1
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.2e-150 538.5 518 66.2
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.8e-148 529.6 578 51.4
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 6.8e-125 453.0 396 59.6
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.4e-115 419.9 416 56.7
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.1e-114 419.1 318 68.2
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 4.6e-113 413.7 376 71.0
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 1.1e-103 382.5 281 71.5
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 6.3e-94 350.1 368 49.5
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 5.3e-85 320.5 510 40.4
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 8.5e-83 313.2 266 60.2
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 2.8e-78 298.1 309 51.8
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 3.7e-70 271.2 215 64.7
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 2.8e-62 245.0 386 42.0
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 1.9e-58 232.3 134 83.6
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 1.0e-56 226.5 1048 23.0
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.4e-55 221.5 396 35.9
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 4.8e-54 217.6 1017 24.8
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.5e-44 184.5 107 85.0
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 5.9e-44 184.1 99 85.9
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 3.8e-43 181.4 190 52.6
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 1.1e-42 179.9 164 54.3
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.1e-41 175.6 117 72.6
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 2.0e-39 169.1 242 46.7
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.6e-39 168.7 107 76.6
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 1.7e-38 166.0 258 38.0
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.7e-38 164.9 149 57.7
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 4.1e-37 161.4 103 71.8
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.2e-33 149.8 121 62.0
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 2.6e-31 142.1 88 77.3
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 9.8e-31 140.2 93 76.3
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.2e-30 139.0 119 57.1
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.1e-26 126.7 270 33.0
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 2.3e-24 119.0 270 32.6
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 2.0e-23 115.9 270 32.2
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.1e-21 110.2 188 37.2
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.4e-21 107.8 68 79.4
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 1.7e-19 102.8 97 62.9
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.7e-19 102.8 59 81.4
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.9e-18 99.4 225 37.3
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.3e-18 97.4 67 71.6
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 8.1e-17 94.0 102 53.9
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 1.8e-16 92.8 262 35.5
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.3e-16 92.4 78 59.0
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 5.8e-15 87.8 47 93.6
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 1.7e-14 86.3 51 78.4
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.6e-12 78.2 151 35.8
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.3e-11 76.6 58 63.8
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.9e-10 72.8 103 43.7
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.3e-10 70.9 184 33.7
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 1.2e-09 70.1 75 50.7
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 3.6e-09 68.6 66 53.0
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 3.1e-08 65.5 75 48.0
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 5.8e-07 61.2 106 41.5
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 5.8e-07 61.2 106 41.5
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 5.8e-07 61.2 106 41.5
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 9.9e-07 60.5 51 56.9


User provided reference genes

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