Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G1272 Salvia bowleyana HOM05D001356 ORTHO05D008843 5.3e-90 334.3 171 100.0
SalBow6G1927 Salvia bowleyana HOM05D001356 ORTHO05D008843 1.2e-36 157.1 89 93.3
SalBow3G3553 Salvia bowleyana HOM05D000145 ORTHO05D000115 1.8e-24 116.7 86 73.3
SalBow1G8237 Salvia bowleyana HOM05D001356 ORTHO05D008843 3.1e-21 105.9 138 52.2
SalBow1G7783 Salvia bowleyana HOM05D001356 ORTHO05D008843 9.0e-21 104.4 138 51.4
Migut.H01239 Erythranthe guttata HOM05D001356 ORTHO05D008843 5.1e-16 88.6 139 41.7
SGA_v2.0_scaffold70G23388 Striga asiatica HOM05D001356 ORTHO05D008843 1.9e-15 86.7 139 41.7
MSTRG.14860 Avicennia marina HOM05D001356 ORTHO05D008843 5.7e-15 85.1 145 44.1
MSTRG.14135 Avicennia marina HOM05D001356 ORTHO05D008843 6.2e-14 81.6 140 41.4
Migut.M00424 Erythranthe guttata HOM05D001356 ORTHO05D008843 8.2e-14 81.3 66 63.6
Manes.12G069600 Manihot esculenta HOM05D001356 ORTHO05D008843 8.2e-14 81.3 151 37.7
SGA_v2.0_scaffold34G13759 Striga asiatica HOM05D001356 ORTHO05D008843 2.4e-13 79.7 66 60.6
Cpa.g.sc132.23 Carica papaya HOM05D001356 ORTHO05D008843 1.2e-12 77.4 161 36.0
Ciclev10014736m.g Citrus clementina HOM05D001356 ORTHO05D008843 3.4e-12 75.9 50 70.0
ECA234G1829 Erigeron canadensis HOM05D001356 ORTHO05D008843 3.4e-12 75.9 137 38.0
CANSAT64G2058 Cannabis sativa HOM05D001356 ORTHO05D008843 4.5e-12 75.5 52 67.3
Duzib138G0129 Durio zibethinus HOM05D001356 ORTHO05D008843 4.5e-12 75.5 54 66.7
QL08p030667 Quercus lobata HOM05D001356 ORTHO05D008843 4.5e-12 75.5 162 37.7
Gohir.D07G193900 Gossypium hirsutum HOM05D001356 ORTHO05D008843 5.8e-12 75.1 54 64.8
Gorai.001G217000 Gossypium raimondii HOM05D001356 ORTHO05D008843 5.8e-12 75.1 54 64.8
CSS0027248 Camellia sinensis var. sinensis HOM05D001356 ORTHO05D008843 7.6e-12 74.7 138 37.0
Cc05_g02940 Coffea canephora HOM05D001356 ORTHO05D008843 7.6e-12 74.7 52 71.2
Rhsim04G0050300 Rhododendron simsii HOM05D001356 ORTHO05D008843 7.6e-12 74.7 51 66.7
TWI36G0748 Tripterygium wilfordii HOM05D001356 ORTHO05D008843 7.6e-12 74.7 54 64.8
Thecc.01G182300 Theobroma cacao HOM05D001356 ORTHO05D008843 1.0e-11 74.3 54 63.0
Duzib133G0533 Durio zibethinus HOM05D001356 ORTHO05D008843 1.3e-11 73.9 54 63.0
RcHm_v2.0_Chr2g0158031 Rosa chinensis HOM05D001356 ORTHO05D008843 1.3e-11 73.9 52 63.5
TAR629G2076 Trochodendron aralioides HOM05D001356 ORTHO05D008843 1.7e-11 73.6 51 68.6
Actinidia10799 Actinidia chinensis HOM05D001356 ORTHO05D008843 2.2e-11 73.2 137 37.2
PSO782G5226 Papaver somniferum HOM05D001356 ORTHO05D008843 2.2e-11 73.2 147 34.7
SalBow7G4227 Salvia bowleyana HOM05D001356 ORTHO05D008843 2.2e-11 73.2 51 70.6
CiPaw.03G155100 Carya illinoinensis HOM05D001356 ORTHO05D008843 2.9e-11 72.8 138 36.2
ClCG09G011210 Citrullus lanatus HOM05D001356 ORTHO05D008843 2.9e-11 72.8 51 66.7
COL.COLO4_21880 Corchorus olitorius HOM05D001356 ORTHO05D008843 2.9e-11 72.8 54 63.0
MELO3C014434.2 Cucumis melo HOM05D001356 ORTHO05D008843 2.9e-11 72.8 51 66.7
CsaV3_6G037750 Cucumis sativus L. HOM05D001356 ORTHO05D008843 2.9e-11 72.8 51 66.7
FAN05G2749 Fragaria x ananassa HOM05D001356 ORTHO05D008843 2.9e-11 72.8 51 64.7
FAN14G2477 Fragaria x ananassa HOM05D001356 ORTHO05D008843 2.9e-11 72.8 51 64.7
Prupe.3G210100 Prunus persica HOM05D001356 ORTHO05D008843 2.9e-11 72.8 51 66.7
FvH4_6g42120 Fragaria vesca HOM05D001356 ORTHO05D008843 5.0e-11 72.0 51 64.7
Hma1.2p1_0177F.1_g078080 Hydrangea macrophylla HOM05D001356 ORTHO05D008843 5.0e-11 72.0 138 35.5
Gohir.D11G159700 Gossypium hirsutum HOM05D001356 ORTHO05D008843 6.5e-11 71.6 54 61.1
Gorai.007G170300 Gossypium raimondii HOM05D001356 ORTHO05D008843 6.5e-11 71.6 54 61.1
Lsat_1_v5_gn_5_124581 Lactuca sativa HOM05D001356 ORTHO05D008843 6.5e-11 71.6 55 61.8
AT2G05810 Arabidopsis thaliana HOM05D001356 ORTHO05D008843 8.4e-11 71.2 52 61.5
Eucgr.K00753 Eucalyptus grandis HOM05D001356 ORTHO05D008843 8.4e-11 71.2 51 62.7
Nitab4.5_0000482g0290 Nicotiana tabacum HOM05D001356 ORTHO05D008843 8.4e-11 71.2 53 62.3
Nitab4.5_0005008g0030 Nicotiana tabacum HOM05D001356 ORTHO05D008843 8.4e-11 71.2 53 62.3
GSVIVG01030505001 Vitis vinifera HOM05D001356 ORTHO05D008843 8.4e-11 71.2 51 66.7
Sed0009631 Sechium edule HOM05D001356 ORTHO05D008843 1.1e-10 70.9 51 64.7
unitig_52.g17332 Utricularia gibba HOM05D001356 ORTHO05D008843 1.1e-10 70.9 51 60.8
Haze_12766 Corylus avellana HOM05D001356 ORTHO05D008843 1.4e-10 70.5 51 64.7
HanXRQChr10g0305911 Helianthus annuus HOM05D001356 ORTHO05D008843 1.4e-10 70.5 141 35.5
PSO478G0337 Papaver somniferum HOM05D001356 ORTHO05D008843 1.4e-10 70.5 51 62.7
unitig_26.g9927 Utricularia gibba HOM05D001356 ORTHO05D008843 1.4e-10 70.5 93 48.4
AL3G43340 Arabidopsis lyrata HOM05D001356 ORTHO05D008843 1.9e-10 70.1 52 59.6
PGR142G3726 Punica granatum HOM05D001356 ORTHO05D008843 1.9e-10 70.1 50 62.0
Sabra14G0120500 Salix brachista HOM05D001356 ORTHO05D008843 1.9e-10 70.1 51 62.7
Sc06g0009660 Simmondsia chinensis HOM05D001356 ORTHO05D008843 1.9e-10 70.1 113 45.1
SGA_v2.0_scaffold159G37557 Striga asiatica HOM05D001356 ORTHO05D008843 1.9e-10 70.1 142 38.0
Atru.chr6.3257 Acer truncatum HOM05D001356 ORTHO05D008843 3.2e-10 69.3 50 64.0
Aa31sc209G100 Aethionema arabicum HOM05D001356 ORTHO05D008843 3.2e-10 69.3 161 32.3
Aqoxy1G04183 Aquilegia oxysepala HOM05D001356 ORTHO05D008843 3.2e-10 69.3 51 64.7
CAN.G735.1 Capsicum annuum HOM05D001356 ORTHO05D008843 3.2e-10 69.3 53 58.5
FAN02G0691 Fragaria x ananassa HOM05D001356 ORTHO05D008843 3.2e-10 69.3 51 62.7
MD17G1106100 Malus domestica HOM05D001356 ORTHO05D008843 3.2e-10 69.3 52 57.7
TAR020G0002 Trochodendron aralioides HOM05D001356 ORTHO05D008843 3.2e-10 69.3 139 34.5
MBI16_g26183_MAGBIO Magnolia biondii HOM05D001356 ORTHO05D008843 4.2e-10 68.9 55 58.2
Solyc07g049390.3 Solanum lycopersicum HOM05D001356 ORTHO05D008843 4.2e-10 68.9 50 62.0
Sopen07g024730 Solanum pennellii HOM05D001356 ORTHO05D008843 4.2e-10 68.9 50 62.0
PGSC0003DMG400000663 Solanum tuberosum HOM05D001356 ORTHO05D008843 4.2e-10 68.9 50 62.0
MD09G1114400 Malus domestica HOM05D001356 ORTHO05D008843 5.5e-10 68.6 53 62.3
CARHR103390 Cardamine hirsuta HOM05D001356 ORTHO05D008843 7.1e-10 68.2 51 58.8
Oeu017976.1 Olea europaea HOM05D001356 ORTHO05D008843 7.1e-10 68.2 122 40.2
Peaxi162Scf00921g00217 Petunia axillaris HOM05D001356 ORTHO05D008843 7.1e-10 68.2 50 62.0
Carub.0003s2704 Capsella rubella HOM05D001356 ORTHO05D008843 9.3e-10 67.8 52 55.8
FvH4_3g23060 Fragaria vesca HOM05D001356 ORTHO05D008843 9.3e-10 67.8 51 58.8
Cfa014318 Carpinus fangiana HOM05D001356 ORTHO05D008843 1.2e-09 67.4 51 60.8
FAN11G2541 Fragaria x ananassa HOM05D001356 ORTHO05D008843 1.2e-09 67.4 51 58.8
DCAR_012919 Daucus carota HOM05D003710 ORTHO05D008843 1.6e-09 67.0 56 58.9
Potri.014G158700 Populus trichocarpa HOM05D001356 ORTHO05D008843 2.1e-09 66.6 148 33.1
CDE07G0722 Ceratophyllum demersum HOM05D001356 ORTHO05D008843 2.7e-09 66.2 51 54.9
Lsat_1_v5_gn_9_105840 Lactuca sativa HOM05D001356 ORTHO05D008843 3.5e-09 65.9 54 55.6
DCAR_021139 Daucus carota HOM05D001356 ORTHO05D008843 6.1e-09 65.1 138 34.1
Dinv08717 Davidia involucrata HOM05D001356 ORTHO05D008843 6.1e-09 65.1 129 34.9
SEGI_04334 Sequoiadendron giganteum HOM05D001356 ORTHO05D008843 7.9e-09 64.7 52 57.7
Potri.002G224400 Populus trichocarpa HOM05D001356 ORTHO05D008843 1.0e-08 64.3 51 56.9
ATR0178G015 Amborella trichopoda HOM05D001356 ORTHO05D008843 1.3e-08 63.9 52 61.5
Gohir.A11G152900 Gossypium hirsutum HOM05D001356 ORTHO05D008843 1.3e-08 63.9 47 63.8


User provided reference genes

Program Settings