Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 2.9e-82 308.5 156 100.0
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.0e-39 167.2 140 55.0
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 5.1e-39 164.9 138 55.8
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.6e-37 159.8 128 57.8
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.2e-37 159.5 128 57.8
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 6.9e-36 154.5 133 54.9
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 9.0e-36 154.1 140 52.1
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 9.0e-36 154.1 131 53.4
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.2e-34 149.4 136 52.2
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 2.9e-34 149.1 133 51.9
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.9e-34 149.1 136 50.7
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 2.9e-34 149.1 141 51.8
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 6.5e-34 147.9 131 49.6
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 3.2e-33 145.6 149 50.3
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 4.2e-33 145.2 131 49.6
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 5.5e-33 144.8 134 50.0
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 5.5e-33 144.8 129 48.8
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 7.2e-33 144.4 137 50.4
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 9.4e-33 144.1 136 51.5
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 9.4e-33 144.1 141 49.6
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.2e-32 143.7 131 48.9
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.2e-32 143.7 133 52.6
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.6e-32 143.3 149 49.0
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 2.1e-32 142.9 131 49.6
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.1e-32 142.9 148 47.3
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 2.7e-32 142.5 128 52.3
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 2.7e-32 142.5 131 51.1
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 2.7e-32 142.5 129 50.4
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 3.6e-32 142.1 134 49.3
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 4.6e-32 141.7 128 53.9
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.6e-32 141.7 124 52.4
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 6.1e-32 141.4 131 50.4
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.0e-31 140.6 124 51.6
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.4e-31 140.2 138 48.6
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.4e-31 140.2 124 51.6
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 1.8e-31 139.8 131 49.6
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.8e-31 139.8 136 47.8
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.3e-31 139.4 135 47.4
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.0e-31 139.0 150 47.3
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.9e-31 138.7 143 49.7
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 3.9e-31 138.7 155 45.8
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 3.9e-31 138.7 129 49.6
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 3.9e-31 138.7 131 50.4
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 3.9e-31 138.7 131 51.9
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 5.1e-31 138.3 129 48.1
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 5.1e-31 138.3 131 48.1
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 5.1e-31 138.3 136 47.8
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 8.8e-31 137.5 131 50.4
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 8.8e-31 137.5 140 48.6
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.1e-30 137.1 122 52.5
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.5e-30 136.7 129 49.6
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.5e-30 136.7 122 51.6
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.5e-30 136.7 128 51.6
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.5e-30 136.7 147 45.6
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.5e-30 136.0 129 48.8
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 4.3e-30 135.2 139 46.8
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 5.7e-30 134.8 152 45.4
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 7.4e-30 134.4 129 47.3
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.3e-29 133.7 129 48.8
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 1.3e-29 133.7 139 46.8
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.3e-29 133.7 122 49.2
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.2e-29 132.9 136 47.8
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 2.2e-29 132.9 122 49.2
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.2e-29 132.9 125 48.8
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 3.7e-29 132.1 145 46.9
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 3.7e-29 132.1 120 48.3
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 4.8e-29 131.7 124 47.6
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 4.8e-29 131.7 154 45.5
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 6.3e-29 131.3 149 44.3
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 8.2e-29 131.0 130 46.9
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 8.2e-29 131.0 145 48.3
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 8.2e-29 131.0 124 49.2
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 8.2e-29 131.0 124 49.2
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.8e-28 129.8 147 44.2
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.4e-28 129.4 148 46.6
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 5.3e-28 128.3 124 46.8
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 6.9e-28 127.9 149 43.6
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.2e-27 127.1 132 48.5
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 2.0e-27 126.3 147 44.2
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.6e-27 125.9 136 47.8
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 3.4e-27 125.6 122 46.7
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 3.4e-27 125.6 141 45.4
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 4.5e-27 125.2 132 48.5
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 5.9e-27 124.8 144 45.8
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 7.7e-27 124.4 122 43.4
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 7.7e-27 124.4 120 48.3
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 1.0e-26 124.0 131 45.8
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.0e-26 124.0 108 56.5
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.3e-26 123.6 144 44.4
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.7e-26 123.2 128 45.3
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.7e-26 123.2 139 46.0
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 2.9e-26 122.5 110 53.6
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 5.0e-26 121.7 117 47.9
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 5.0e-26 121.7 131 45.0
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 6.5e-26 121.3 144 43.8
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 6.5e-26 121.3 144 45.1
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.1e-25 120.6 144 43.8
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.2e-25 119.0 144 44.4
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 9.4e-25 117.5 140 45.0
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.2e-24 117.1 121 44.6
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.2e-24 117.1 144 44.4
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.6e-24 116.7 145 43.4
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 2.1e-24 116.3 147 44.2
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 2.7e-24 115.9 139 43.9
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 3.6e-24 115.5 139 43.9
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 3.6e-24 115.5 139 43.9
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 3.6e-24 115.5 139 43.9
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.7e-24 115.2 112 50.9
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 6.1e-24 114.8 139 43.2
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 7.9e-24 114.4 120 45.8
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.4e-23 113.6 150 40.7
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.8e-23 113.2 120 45.0
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 8.8e-23 110.9 107 52.3
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 2.0e-22 109.8 98 50.0
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 3.3e-22 109.0 84 59.5
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 9.7e-22 107.5 124 44.4
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 9.7e-22 107.5 143 42.0
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 2.8e-21 105.9 142 40.1
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 2.8e-21 105.9 142 40.1
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 2.8e-21 105.9 107 49.5
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 6.3e-21 104.8 139 42.4
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 6.3e-21 104.8 135 42.2
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 6.3e-21 104.8 118 41.5
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 4.1e-20 102.1 110 46.4
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.2e-19 100.5 114 43.9
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.5e-19 100.1 117 40.2
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 4.5e-19 98.6 151 33.1
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.7e-18 96.7 107 43.9
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.9e-18 95.9 120 35.0
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 5.0e-18 95.1 120 45.0
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.1e-16 89.7 125 33.6
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 3.6e-16 89.0 78 47.4
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 2.3e-15 86.3 121 37.2
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 3.9e-15 85.5 129 34.9
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 3.9e-15 85.5 120 37.5
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.1e-14 84.0 148 27.7
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.2e-13 79.7 63 55.6
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 2.8e-13 79.3 137 38.7
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.8e-13 78.6 82 51.2
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 4.8e-13 78.6 97 42.3
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 1.8e-12 76.6 75 45.3
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 1.8e-12 76.6 65 50.8
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.1e-12 75.5 136 33.8
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 4.1e-12 75.5 137 35.8
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 9.1e-12 74.3 136 33.8
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.6e-11 72.8 136 33.8
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.2e-08 63.9 55 52.7
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.1e-08 63.2 70 40.0
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 2.6e-06 56.2 71 35.2
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 7.5e-06 54.7 44 54.5


User provided reference genes

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