Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 4.2e-159 564.7 294 100.0
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 2.3e-93 346.3 289 62.3
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.3e-79 299.3 280 55.7
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.3e-79 299.3 280 55.7
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.8e-78 296.2 276 59.8
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 8.9e-77 291.2 261 61.3
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 1.5e-76 290.4 272 57.7
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 1.2e-73 280.8 273 59.0
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.2e-73 280.8 276 56.2
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 4.7e-70 268.9 266 54.1
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 5.2e-69 265.4 273 54.2
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 9.9e-68 261.2 277 54.2
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 2.2e-67 260.0 256 55.1
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 1.4e-66 257.3 265 55.8
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 2.4e-66 256.5 268 54.1
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 1.6e-65 253.8 277 52.0
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.7e-65 253.1 265 54.0
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.3e-64 250.8 262 51.9
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 2.3e-64 250.0 258 52.7
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.0e-64 249.6 262 51.9
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.5e-63 247.3 262 51.9
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 4.3e-63 245.7 262 51.1
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 9.6e-63 244.6 262 51.1
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.6e-62 243.8 231 55.8
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.6e-62 243.8 265 53.6
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 3.6e-62 242.7 271 50.6
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 8.1e-62 241.5 237 59.1
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 1.1e-61 241.1 265 53.2
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.8e-61 240.4 262 49.6
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.8e-61 240.4 258 53.5
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 2.4e-61 240.0 278 48.2
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 2.4e-61 240.0 256 52.3
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 4.0e-61 239.2 278 47.8
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.3e-61 238.8 265 52.8
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 5.3e-61 238.8 269 50.6
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 6.9e-61 238.4 278 49.3
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.0e-61 238.0 265 52.5
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 1.5e-60 237.3 281 49.8
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 2.6e-60 236.5 275 48.4
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 2.6e-60 236.5 266 48.9
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.4e-60 236.1 265 52.8
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.4e-60 236.1 265 52.8
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 4.5e-60 235.7 259 54.1
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.8e-60 235.3 250 52.0
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 5.8e-60 235.3 255 52.2
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 7.6e-60 235.0 265 52.5
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 7.6e-60 235.0 265 50.6
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.3e-59 234.2 254 50.0
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 1.7e-59 233.8 265 52.5
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 2.2e-59 233.4 262 51.1
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 3.8e-59 232.6 275 48.4
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 4.9e-59 232.3 278 47.8
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 8.4e-59 231.5 271 50.2
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.1e-58 231.1 275 49.8
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 1.1e-58 231.1 256 51.2
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 1.4e-58 230.7 254 53.9
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.9e-58 230.3 277 47.3
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 3.2e-58 229.6 263 49.0
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.1e-58 228.4 221 54.8
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 3.5e-57 226.1 268 48.9
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 3.9e-56 222.6 263 47.9
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.9e-56 222.6 268 48.5
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 6.7e-56 221.9 267 49.1
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 6.7e-56 221.9 261 48.7
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 1.5e-55 220.7 265 50.6
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 9.6e-55 218.0 266 47.7
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.6e-54 217.2 266 48.9
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 2.8e-54 216.5 257 50.6
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 8.1e-54 214.9 263 47.9
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 1.4e-53 214.2 268 47.0
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 9.0e-53 211.5 270 47.4
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 9.0e-53 211.5 268 45.5
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 3.8e-51 206.1 255 45.5
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 4.9e-51 205.7 277 44.0
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.1e-50 204.5 282 43.6
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.4e-50 204.1 269 46.8
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 3.2e-50 203.0 266 43.6
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 3.2e-50 203.0 276 42.8
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 3.2e-50 203.0 254 46.9
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 4.2e-50 202.6 269 46.1
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 5.5e-50 202.2 268 45.9
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 1.6e-49 200.7 272 43.0
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.6e-49 200.7 259 46.3
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 3.5e-49 199.5 276 44.2
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 4.6e-49 199.1 262 46.6
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 6.0e-49 198.7 259 45.6
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 7.9e-49 198.4 276 42.8
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.3e-48 197.6 244 46.7
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.5e-47 194.1 269 44.6
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 1.9e-47 193.7 258 46.9
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.9e-47 193.7 178 53.4
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 2.5e-47 193.4 255 43.9
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.3e-47 192.6 275 43.3
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.3e-47 192.6 275 43.3
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 5.6e-47 192.2 255 43.5
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 9.6e-47 191.4 269 42.4
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.3e-46 191.0 265 44.2
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.6e-46 190.7 177 53.7
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 1.1e-45 188.0 200 49.0
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.4e-45 187.6 261 45.2
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 1.8e-45 187.2 257 44.7
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 2.4e-45 186.8 253 40.7
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.0e-45 186.0 179 53.6
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 5.3e-45 185.7 283 40.6
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 6.9e-45 185.3 283 41.3
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 1.5e-44 184.1 169 50.3
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 2.6e-44 183.3 254 43.3
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 1.0e-43 181.4 257 44.7
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 1.3e-43 181.0 254 42.1
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.3e-43 181.0 256 43.8
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 4.9e-43 179.1 264 40.9
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 6.5e-43 178.7 269 42.0
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 6.5e-43 178.7 273 42.1
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 8.4e-43 178.3 178 49.4
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 1.1e-42 177.9 256 43.8
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.4e-42 177.6 264 44.7
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 1.9e-42 177.2 275 40.7
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 2.5e-42 176.8 270 41.9
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 2.5e-42 176.8 178 49.4
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.2e-42 176.4 178 50.0
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.2e-42 176.4 178 50.0
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.6e-41 174.1 271 41.3
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 2.1e-41 173.7 269 39.4
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 2.1e-41 173.7 269 39.4
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.5e-41 172.9 257 40.9
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 6.0e-41 172.2 269 40.1
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 6.0e-41 172.2 269 39.0
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 6.0e-41 172.2 170 52.4
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.0e-41 172.2 178 48.3
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 2.3e-40 170.2 266 41.7
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 6.7e-40 168.7 253 42.7
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 1.5e-39 167.5 263 40.3
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 4.3e-39 166.0 257 41.2
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 6.9e-37 158.7 116 63.8
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 6.9e-37 158.7 253 37.5
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.0e-36 157.1 149 51.0
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 7.6e-36 155.2 262 37.4
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 3.8e-35 152.9 261 37.9
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 2.5e-34 150.2 129 53.5
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.2e-33 147.9 115 61.7
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.2e-33 147.9 116 58.6
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.3e-32 144.4 250 36.8
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 1.8e-32 144.1 196 44.4
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 5.7e-31 139.0 305 34.4
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.8e-29 134.0 137 46.7
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.5e-28 129.4 206 41.7
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 2.7e-25 120.2 117 48.7
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.7e-22 109.8 81 65.4
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 1.0e-19 101.7 121 41.3
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.3e-15 86.7 75 53.3
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 7.4e-15 85.5 212 31.6
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 2.8e-14 83.6 95 37.9
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 4.8e-14 82.8 90 37.8
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 1.4e-13 81.3 146 30.8
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 3.1e-13 80.1 156 40.4
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 3.1e-13 80.1 178 29.2
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 2.9e-11 73.6 249 27.3


User provided reference genes

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