Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 4.5e-158 561.2 288 100.0
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 3.2e-87 325.9 304 58.6
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.2e-86 323.9 295 59.3
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 1.6e-86 323.6 295 60.7
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 3.0e-85 319.3 308 57.1
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 3.9e-85 318.9 303 59.7
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 1.1e-84 317.4 304 57.9
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 9.6e-84 314.3 308 55.2
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 1.8e-82 310.1 298 58.4
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 2.4e-82 309.7 300 56.3
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 4.1e-82 308.9 303 57.4
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 9.0e-82 307.8 296 57.1
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 9.0e-82 307.8 299 57.5
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.2e-81 307.4 298 58.1
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.5e-81 307.0 298 57.0
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.0e-81 306.6 301 58.5
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.0e-81 306.6 299 57.2
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.6e-81 306.2 299 57.2
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 7.6e-81 304.7 299 57.2
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.2e-80 303.1 296 56.4
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 1.4e-79 300.4 297 57.9
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 2.5e-79 299.7 299 56.5
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.2e-79 298.9 297 56.6
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 5.5e-79 298.5 297 56.2
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 7.2e-79 298.1 299 56.5
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 7.2e-79 298.1 304 55.9
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-78 297.4 297 55.2
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.2e-78 297.4 297 55.2
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.6e-78 297.0 296 56.1
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 2.1e-78 296.6 337 51.9
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.1e-78 296.6 304 55.9
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.7e-78 296.2 300 56.0
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 3.6e-78 295.8 297 54.5
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.6e-78 295.8 297 56.2
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 4.6e-78 295.4 304 53.6
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 6.1e-78 295.0 290 57.2
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.0e-77 294.3 297 54.5
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.0e-77 294.3 297 55.2
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 1.3e-77 293.9 295 55.3
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 1.3e-77 293.9 297 55.9
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 2.3e-77 293.1 300 56.0
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 3.9e-77 292.4 298 56.0
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.9e-77 292.4 297 54.2
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.1e-77 292.0 299 55.2
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 5.1e-77 292.0 300 55.7
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 6.7e-77 291.6 302 54.6
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 8.7e-77 291.2 299 54.8
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 8.7e-77 291.2 289 55.0
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.9e-76 290.0 299 53.8
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.9e-76 290.0 299 54.5
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 2.5e-76 289.7 297 54.5
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.5e-76 289.7 298 55.4
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 3.3e-76 289.3 292 55.8
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 3.3e-76 289.3 277 56.3
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 3.3e-76 289.3 300 54.7
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 9.7e-76 287.7 296 54.7
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.3e-75 287.3 300 55.3
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 1.3e-75 287.3 292 54.8
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 1.3e-75 287.3 297 54.2
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.8e-75 286.2 297 54.9
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 2.8e-75 286.2 322 52.5
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 3.7e-75 285.8 307 52.4
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 4.8e-75 285.4 298 53.0
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 6.3e-75 285.0 307 52.8
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 8.2e-75 284.6 303 53.5
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.1e-74 284.3 299 55.5
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.1e-74 284.3 299 52.2
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.1e-74 284.3 302 54.0
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.4e-74 283.9 301 54.2
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.4e-74 283.9 302 53.3
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.8e-74 283.5 301 53.5
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.8e-74 283.5 298 54.4
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.8e-74 283.5 305 52.8
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 2.4e-74 283.1 301 53.5
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 3.1e-74 282.7 305 53.4
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 3.1e-74 282.7 301 54.2
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 4.1e-74 282.3 299 55.5
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 5.3e-74 282.0 304 54.3
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 1.2e-73 280.8 303 52.8
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 1.2e-73 280.8 297 54.5
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.2e-73 280.8 296 54.7
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.5e-73 280.4 370 46.5
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 1.5e-73 280.4 285 54.4
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 3.4e-73 279.3 301 53.5
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 4.5e-73 278.9 301 53.2
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 4.5e-73 278.9 289 54.0
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 5.9e-73 278.5 301 53.5
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 5.9e-73 278.5 302 51.3
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 5.9e-73 278.5 303 52.5
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.0e-72 277.7 302 52.6
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.0e-72 277.7 308 51.9
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.7e-72 276.9 303 52.5
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.2e-72 276.6 302 51.3
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 3.8e-72 275.8 302 51.3
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 5.0e-72 275.4 291 54.3
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 8.5e-72 274.6 291 52.6
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 1.1e-71 274.2 300 51.7
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.4e-71 273.9 290 53.8
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 1.4e-71 273.9 296 54.7
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 3.2e-71 272.7 299 54.5
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.2e-71 272.3 294 52.7
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.2e-70 270.8 294 52.4
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.1e-70 270.0 288 53.5
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 2.1e-70 270.0 297 51.5
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 2.7e-70 269.6 290 54.8
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 3.6e-70 269.2 303 51.2
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 6.1e-70 268.5 292 52.4
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 7.9e-70 268.1 304 52.3
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.8e-69 266.9 298 52.3
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.8e-69 266.9 300 51.0
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 3.9e-69 265.8 285 51.9
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 8.8e-69 264.6 317 49.8
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 8.8e-69 264.6 291 51.5
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.1e-68 264.2 319 50.5
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.1e-68 264.2 299 49.2
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 3.3e-68 262.7 273 53.5
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.7e-68 261.9 295 51.9
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.7e-67 260.4 247 56.7
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 5.3e-66 255.4 227 60.4
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 9.1e-66 254.6 230 59.1
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 3.4e-65 252.7 278 53.6
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.4e-65 252.7 292 49.7
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.7e-64 250.4 292 48.3
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 3.8e-64 249.2 293 49.8
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 6.5e-64 248.4 302 47.0
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 6.5e-64 248.4 295 48.1
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 7.2e-63 245.0 272 51.1
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 5.3e-58 228.8 290 46.9
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 9.1e-58 228.0 300 48.0
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 9.1e-58 228.0 276 47.1
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 2.2e-56 223.4 241 51.0
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 2.7e-54 216.5 268 46.3
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.7e-54 215.7 220 55.0
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 4.4e-52 209.1 228 49.1
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.3e-48 197.6 289 40.8
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 3.8e-48 196.1 193 53.4
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 3.8e-48 196.1 292 39.4
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 1.9e-47 193.7 289 39.8
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 4.2e-47 192.6 289 39.4
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 5.5e-47 192.2 290 42.4
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.6e-46 190.7 301 43.2
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.0e-45 188.0 310 41.9
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.8e-45 187.2 292 38.4
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 9.8e-44 181.4 295 40.0
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 1.8e-42 177.2 283 38.5
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.9e-40 169.9 171 57.3
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 1.9e-39 167.2 202 49.0
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 2.5e-39 166.8 147 57.1
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.0e-37 161.4 174 51.1
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 6.3e-35 152.1 210 45.2
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.8e-34 150.6 211 39.8
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.5e-33 146.4 201 40.8
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 4.7e-30 136.0 311 32.8
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 4.7e-30 136.0 198 40.9
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.3e-29 133.7 135 54.8
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 1.2e-25 121.3 142 48.6
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 8.3e-19 98.6 275 27.3
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 8.6e-16 88.6 116 45.7
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.4e-13 81.3 206 27.2
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.5e-12 77.8 60 56.7
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 4.4e-12 76.3 108 39.8
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 6.4e-11 72.4 162 32.1
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.2e-09 68.2 56 58.9
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.2e-09 68.2 226 29.6
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.9e-07 60.8 151 37.1
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 2.5e-07 60.5 176 26.7


User provided reference genes

Program Settings