Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 5.2e-257 890.6 463 100.0
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 2.6e-99 366.7 513 47.0
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 3.4e-99 366.3 469 50.5
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.1e-89 334.7 507 44.8
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 1.2e-75 288.1 485 43.1
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 3.5e-59 233.4 497 37.0
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 4.5e-59 233.0 495 36.2
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 7.8e-59 232.3 480 40.2
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 2.9e-58 230.3 535 37.0
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 5.0e-58 229.6 532 35.9
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.6e-56 224.6 519 33.7
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 2.1e-56 224.2 526 34.4
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 2.8e-56 223.8 519 36.0
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 2.3e-55 220.7 499 38.3
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 5.2e-55 219.5 499 38.1
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 5.2e-55 219.5 529 35.9
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 6.8e-55 219.2 499 36.5
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 3.4e-54 216.9 514 34.6
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 3.7e-53 213.4 524 33.6
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 6.4e-53 212.6 528 35.2
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 1.1e-52 211.8 495 34.9
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.1e-52 211.8 514 34.2
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 2.4e-52 210.7 515 34.2
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 5.4e-52 209.5 496 35.3
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 2.0e-51 207.6 502 34.3
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 3.5e-51 206.8 507 34.1
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 5.9e-51 206.1 497 35.4
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 2.3e-50 204.1 499 33.5
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 3.0e-50 203.8 482 34.4
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 3.9e-50 203.4 515 33.8
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 3.9e-50 203.4 498 34.9
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 1.1e-49 201.8 518 33.6
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 2.5e-49 200.7 507 33.1
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 4.3e-49 199.9 514 34.0
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 7.3e-49 199.1 546 33.9
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 9.5e-49 198.7 509 32.2
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 1.6e-48 198.0 496 33.9
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 2.8e-48 197.2 507 34.7
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.8e-48 197.2 507 34.7
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.8e-48 197.2 514 35.2
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 8.0e-48 195.7 503 33.2
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.0e-47 195.3 497 34.6
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 1.0e-47 195.3 486 32.3
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 1.8e-47 194.5 481 33.3
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 4.0e-47 193.4 508 34.1
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 6.8e-47 192.6 480 34.4
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 2.6e-46 190.7 476 34.7
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 5.8e-46 189.5 513 31.8
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 1.7e-45 188.0 599 30.7
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 2.9e-45 187.2 481 34.5
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 1.4e-44 184.9 517 33.3
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 1.4e-44 184.9 503 32.6
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 4.1e-44 183.3 490 31.8
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 9.2e-44 182.2 486 33.1
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 1.2e-43 181.8 485 31.8
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 2.0e-43 181.0 506 31.6
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 2.0e-43 181.0 479 32.8
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 2.7e-43 180.6 508 33.7
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 3.5e-43 180.3 594 29.3
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 6.0e-43 179.5 503 31.2
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.0e-42 178.7 493 33.1
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 1.7e-42 177.9 545 33.0
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 3.0e-42 177.2 510 32.2
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 3.9e-42 176.8 473 34.0
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 5.0e-42 176.4 491 33.6
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 5.0e-42 176.4 508 31.1
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 5.0e-42 176.4 466 32.6
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 6.6e-42 176.0 515 32.8
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.9e-41 174.5 522 31.6
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 7.3e-41 172.6 496 31.7
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 1.2e-40 171.8 500 31.4
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 2.8e-40 170.6 159 59.7
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 2.6e-38 164.1 484 31.8
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 2.6e-38 164.1 513 32.2
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 3.4e-38 163.7 501 30.3
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 4.9e-37 159.8 540 29.8
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 4.1e-36 156.8 495 31.3
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 7.1e-36 156.0 288 38.9
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 3.5e-35 153.7 344 36.6
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 4.6e-35 153.3 499 31.3
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 4.6e-35 153.3 551 29.9
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 7.8e-35 152.5 522 32.0
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 7.8e-35 152.5 531 29.8
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.0e-34 152.1 538 29.4
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 6.6e-34 149.4 534 29.6
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 1.1e-33 148.7 192 45.8
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 4.3e-33 146.7 472 30.3
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 5.6e-33 146.4 446 33.9
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.6e-32 143.7 462 31.8
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 4.7e-32 143.3 102 69.6
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 3.1e-31 140.6 561 27.8
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 4.0e-31 140.2 542 29.5
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 6.8e-31 139.4 145 52.4
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 2.6e-30 137.5 525 30.3
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 3.4e-30 137.1 483 30.2
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 3.4e-30 137.1 483 30.2
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 4.4e-30 136.7 486 29.6
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 5.8e-30 136.3 528 29.2
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 9.9e-30 135.6 476 30.0
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 9.9e-30 135.6 206 46.1
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 2.9e-29 134.0 518 30.7
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 2.9e-29 134.0 491 29.7
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 9.2e-28 129.0 430 28.6
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 1.2e-27 128.6 512 29.9
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 1.6e-24 118.2 260 35.0
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 8.1e-24 115.9 99 61.6
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 4.0e-23 113.6 108 54.6
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 5.2e-23 113.2 548 27.2
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 2.6e-22 110.9 471 28.9
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 1.2e-19 102.1 201 39.3
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 1.0e-18 99.0 71 71.8
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 3.0e-18 97.4 121 46.3
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 3.9e-18 97.1 64 71.9
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 1.1e-17 95.5 61 73.8
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 5.6e-17 93.2 477 25.2
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 8.1e-16 89.4 108 46.3
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 9.0e-15 85.9 264 28.8
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 1.1e-12 79.0 334 26.6
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 2.4e-12 77.8 86 47.7
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 1.8e-10 71.6 228 28.5
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 3.9e-10 70.5 136 29.4
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 5.1e-10 70.1 74 44.6
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.9e-09 68.2 89 37.1
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 3.3e-09 67.4 93 37.6
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 3.3e-09 67.4 145 31.0
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 5.6e-09 66.6 82 39.0
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 7.4e-09 66.2 85 36.5
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 7.4e-09 66.2 158 31.6
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 9.6e-09 65.9 263 30.0
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 1.6e-08 65.1 76 43.4
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 1.6e-08 65.1 152 28.3
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 2.1e-08 64.7 218 26.1
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 2.1e-08 64.7 92 37.0
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 2.8e-08 64.3 79 38.0
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 2.8e-08 64.3 93 36.6
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 4.8e-08 63.5 89 37.1
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 8.1e-08 62.8 75 41.3
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 1.1e-07 62.4 84 36.9
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 1.4e-07 62.0 63 41.3
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 1.4e-07 62.0 78 38.5
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.8e-07 61.6 50 52.0
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.8e-07 61.6 203 28.1
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.4e-07 61.2 75 40.0
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 2.4e-07 61.2 63 42.9
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 2.4e-07 61.2 104 30.8
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 3.1e-07 60.8 95 35.8
Cc03_g05700 Coffea canephora HOM05D008307 ORTHO05D010374 3.1e-07 60.8 130 29.2
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 3.1e-07 60.8 260 29.2
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 3.1e-07 60.8 76 38.2
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 3.1e-07 60.8 88 38.6
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 4.0e-07 60.5 97 37.1
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 5.3e-07 60.1 92 34.8
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 6.9e-07 59.7 75 38.7
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 6.9e-07 59.7 72 43.1
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 9.0e-07 59.3 54 50.0
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.2e-06 58.9 54 48.1
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.2e-06 58.9 95 32.6
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 2.0e-06 58.2 56 44.6
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 2.6e-06 57.8 78 39.7
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 3.4e-06 57.4 54 46.3
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 3.4e-06 57.4 85 36.5
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 5.8e-06 56.6 159 27.7
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 5.8e-06 56.6 305 24.3
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 7.6e-06 56.2 56 42.9
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 7.6e-06 56.2 85 36.5


User provided reference genes

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