Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G0739 Salvia bowleyana HOM05D004665 ORTHO05D006264 1.1e-196 689.9 366 100.0
Migut.F00002 Erythranthe guttata HOM05D004665 ORTHO05D006264 3.3e-153 545.4 446 65.2
MSTRG.3035 Avicennia marina HOM05D004665 ORTHO05D006264 4.3e-145 518.5 447 62.9
Oeu050153.1 Olea europaea HOM05D004665 ORTHO05D006264 6.0e-139 498.0 422 62.6
Hma1.2p1_0421F.1_g149890 Hydrangea macrophylla HOM05D004665 ORTHO05D006264 1.1e-135 487.3 426 61.3
Dinv33260 Davidia involucrata HOM05D004665 ORTHO05D006264 1.1e-132 477.2 404 62.6
CSS0012528 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 5.4e-132 474.9 424 60.6
CSS0013787 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 5.4e-132 474.9 424 60.6
Cc07_g01420 Coffea canephora HOM05D004665 ORTHO05D006264 5.4e-132 474.9 444 57.9
Rhsim08G0037600 Rhododendron simsii HOM05D004665 ORTHO05D006264 7.1e-132 474.6 426 59.4
CAN.G473.165 Capsicum annuum HOM05D004665 ORTHO05D006264 1.9e-129 466.5 425 59.3
Manes.04G097200 Manihot esculenta HOM05D004665 ORTHO05D006264 1.9e-129 466.5 427 58.8
Nitab4.5_0000519g0340 Nicotiana tabacum HOM05D004665 ORTHO05D006264 3.3e-129 465.7 425 59.1
Potri.014G139700 Populus trichocarpa HOM05D004665 ORTHO05D006264 1.4e-127 460.3 429 58.7
CiPaw.04G000200 Carya illinoinensis HOM05D004665 ORTHO05D006264 9.0e-127 457.6 427 57.4
COL.COLO4_13402 Corchorus olitorius HOM05D004665 ORTHO05D006264 1.7e-125 453.4 427 57.6
Gorai.007G071300 Gossypium raimondii HOM05D004665 ORTHO05D006264 4.9e-125 451.8 427 56.0
Gohir.D11G065800 Gossypium hirsutum HOM05D004665 ORTHO05D006264 1.1e-124 450.7 427 55.7
Prupe.3G315100 Prunus persica HOM05D004665 ORTHO05D006264 2.4e-124 449.5 427 56.9
Gohir.A11G061900 Gossypium hirsutum HOM05D004665 ORTHO05D006264 3.2e-124 449.1 427 55.5
Thecc.04G051300 Theobroma cacao HOM05D004665 ORTHO05D006264 4.2e-124 448.7 446 55.8
Nitab4.5_0002901g0090 Nicotiana tabacum HOM05D004665 ORTHO05D006264 7.1e-124 448.0 462 54.3
PGR142G3265 Punica granatum HOM05D004665 ORTHO05D006264 7.1e-124 448.0 426 56.3
RcHm_v2.0_Chr2g0176711 Rosa chinensis HOM05D004665 ORTHO05D006264 7.9e-123 444.5 426 56.6
GSVIVG01032952001 Vitis vinifera HOM05D004665 ORTHO05D006264 1.7e-122 443.4 427 55.5
MD17G1004100 Malus domestica HOM05D004665 ORTHO05D006264 5.1e-122 441.8 430 55.6
Sabra14G0105400 Salix brachista HOM05D004665 ORTHO05D006264 5.1e-122 441.8 450 56.0
FvH4_6g54450 Fragaria vesca HOM05D004665 ORTHO05D006264 6.6e-122 441.4 428 56.8
Sc16g0004200 Simmondsia chinensis HOM05D004665 ORTHO05D006264 6.6e-122 441.4 426 55.6
Cfa007139 Carpinus fangiana HOM05D004665 ORTHO05D006264 8.7e-122 441.0 425 56.2
Duzib147G0914 Durio zibethinus HOM05D004665 ORTHO05D006264 3.3e-121 439.1 448 53.6
TWI60G0175 Tripterygium wilfordii HOM05D004665 ORTHO05D006264 3.3e-121 439.1 425 56.0
QL02p068558 Quercus lobata HOM05D004665 ORTHO05D006264 5.6e-121 438.3 428 56.5
CANSAT64G2474 Cannabis sativa HOM05D004665 ORTHO05D006264 1.3e-120 437.2 427 55.3
FAN09G0696 Fragaria x ananassa HOM05D004665 ORTHO05D006264 1.3e-120 437.2 428 56.5
FAN14G5400 Fragaria x ananassa HOM05D004665 ORTHO05D006264 1.3e-120 437.2 428 56.5
ECA238G3366 Erigeron canadensis HOM05D004665 ORTHO05D006264 1.6e-120 436.8 424 56.4
Aqoxy5G03000 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 1.8e-119 433.3 428 55.8
Lj2g0020206 Lotus japonicus HOM05D004665 ORTHO05D006264 1.8e-119 433.3 426 55.9
Medtr6g033100 Medicago truncatula HOM05D004665 ORTHO05D006264 1.8e-119 433.3 426 56.1
SGA_v2.0_scaffold44G16957 Striga asiatica HOM05D004665 ORTHO05D006264 1.8e-119 433.3 445 54.6
ClCG05G012480 Citrullus lanatus HOM05D004665 ORTHO05D006264 4.0e-119 432.2 427 54.6
CsaV3_3G020050 Cucumis sativus L. HOM05D004665 ORTHO05D006264 6.9e-119 431.4 427 54.3
MD09G1001000 Malus domestica HOM05D004665 ORTHO05D006264 1.2e-118 430.6 427 56.2
Eucgr.I01571 Eucalyptus grandis HOM05D004665 ORTHO05D006264 3.4e-118 429.1 429 55.0
Glyma.16G149500 Glycine max HOM05D004665 ORTHO05D006264 3.4e-118 429.1 426 55.9
Psat1g014640 Pisum sativum HOM05D004665 ORTHO05D006264 3.4e-118 429.1 426 55.2
Sed0011932 Sechium edule HOM05D004665 ORTHO05D006264 3.4e-118 429.1 427 54.6
Phvul.004G068100 Phaseolus vulgaris HOM05D004665 ORTHO05D006264 4.5e-118 428.7 426 55.9
Glyma.02G068000 Glycine max HOM05D004665 ORTHO05D006264 9.9e-118 427.6 426 55.6
TAR622G0174 Trochodendron aralioides HOM05D004665 ORTHO05D006264 1.7e-117 426.8 428 56.3
THA.LOC104824001 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 2.2e-117 426.4 426 54.7
VMungo0464G1810 Vigna mungo HOM05D004665 ORTHO05D006264 2.9e-117 426.0 426 55.9
TPR.G6109 Trifolium pratense HOM05D004665 ORTHO05D006264 1.9e-116 423.3 426 54.9
Ca_04509_v3 Cicer arietinum L. HOM05D004665 ORTHO05D006264 4.2e-116 422.2 426 54.7
Haze_14984 Corylus avellana HOM05D004665 ORTHO05D006264 7.1e-116 421.4 459 52.3
MBI11_g30566_MAGBIO Magnolia biondii HOM05D004665 ORTHO05D006264 2.1e-115 419.9 425 54.8
Lj7A619T48 Lonicera japonica HOM05D004665 ORTHO05D006264 4.6e-115 418.7 532 47.7
Sp2g15790 Schrenkiella parvula HOM05D004665 ORTHO05D006264 6.0e-115 418.3 429 54.3
THA.LOC104805296 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 1.0e-114 417.5 428 54.4
Ciclev10015243m.g Citrus clementina HOM05D004665 ORTHO05D006264 1.9e-113 413.3 429 53.8
HanXRQChr07g0197991 Helianthus annuus HOM05D004665 ORTHO05D006264 2.5e-113 412.9 423 54.6
AUR62032536 Chenopodium quinoa HOM05D004665 ORTHO05D006264 4.3e-113 412.1 428 53.5
Thhalv10004224m.g Eutrema salsugineum HOM05D004665 ORTHO05D006264 4.3e-113 412.1 426 54.0
Carub.0005s0467 Capsella rubella HOM05D004665 ORTHO05D006264 1.3e-112 410.6 426 54.0
A06p41830 Brassica napus HOM05D004665 ORTHO05D006264 4.8e-112 408.7 426 53.8
C07p35690 Brassica napus HOM05D004665 ORTHO05D006264 4.8e-112 408.7 426 53.8
BolC7t44090H Brassica oleracea HOM05D004665 ORTHO05D006264 4.8e-112 408.7 426 53.8
BraA06t27102Z Brassica rapa HOM05D004665 ORTHO05D006264 4.8e-112 408.7 426 53.8
AL5G15510 Arabidopsis lyrata HOM05D004665 ORTHO05D006264 6.2e-112 408.3 426 54.0
PSO478G3167 Papaver somniferum HOM05D004665 ORTHO05D006264 8.1e-112 407.9 427 53.9
Lalb_Chr21g0316981 Lupinus albus HOM05D004665 ORTHO05D006264 1.4e-111 407.1 427 53.4
Aa31LG2G5890 Aethionema arabicum HOM05D004665 ORTHO05D006264 1.8e-111 406.8 424 53.3
PSO017G6847 Papaver somniferum HOM05D004665 ORTHO05D006264 1.8e-111 406.8 427 53.4
A02p34660 Brassica napus HOM05D004665 ORTHO05D006264 3.1e-111 406.0 425 53.9
Actinidia19542 Actinidia chinensis HOM05D004665 ORTHO05D006264 5.3e-111 405.2 315 66.3
AT3G26670 Arabidopsis thaliana HOM05D004665 ORTHO05D006264 5.3e-111 405.2 426 54.0
BraA02t08474Z Brassica rapa HOM05D004665 ORTHO05D006264 1.5e-110 403.7 425 53.4
C02p53220 Brassica napus HOM05D004665 ORTHO05D006264 2.0e-110 403.3 425 53.6
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 2.6e-110 402.9 434 53.5
BcaB07g30223 Brassica carinata HOM05D004665 ORTHO05D006264 4.5e-110 402.1 428 53.5
CARHR147680 Cardamine hirsuta HOM05D004665 ORTHO05D006264 7.6e-110 401.4 429 52.9
arahy.Tifrunner.gnm1.ann1.3E1BT5 Arachis hypogaea HOM05D004665 ORTHO05D006264 1.7e-109 400.2 449 49.9
BcaC03g17377 Brassica carinata HOM05D004665 ORTHO05D006264 4.9e-109 398.7 425 52.9
BolC2t11394H Brassica oleracea HOM05D004665 ORTHO05D006264 4.9e-109 398.7 425 52.9
Gohir.D11G065866 Gossypium hirsutum HOM05D004665 ORTHO05D006264 2.1e-107 393.3 428 50.9
Lalb_Chr02g0156931 Lupinus albus HOM05D004665 ORTHO05D006264 2.7e-107 392.9 429 52.7
Nn3g16211 Nelumbo nucifera HOM05D004665 ORTHO05D006264 2.7e-107 392.9 429 53.4
BcaC06g31051 Brassica carinata HOM05D004665 ORTHO05D006264 1.5e-105 387.1 426 52.1
Duzib264G1200 Durio zibethinus HOM05D004665 ORTHO05D006264 1.3e-104 384.0 394 55.3
arahy.Tifrunner.gnm1.ann1.1F18R3 Arachis hypogaea HOM05D004665 ORTHO05D006264 7.2e-100 368.2 426 48.6
EL10Ac6g13903 Beta vulgaris HOM05D004665 ORTHO05D006264 9.3e-100 367.9 478 46.9
Manes.11G073500 Manihot esculenta HOM05D004665 ORTHO05D006264 1.6e-99 367.1 397 52.6
Nn4g22078 Nelumbo nucifera HOM05D004665 ORTHO05D006264 2.1e-99 366.7 430 49.5
Hund04137 Selenicereus undatus HOM05D004665 ORTHO05D006264 3.6e-99 365.9 409 50.1
MELO3C014760.2 Cucumis melo HOM05D004665 ORTHO05D006264 3.9e-98 362.5 388 51.8
CDE06G1855 Ceratophyllum demersum HOM05D004665 ORTHO05D006264 2.8e-96 356.3 425 48.5
Cpa.g.sc70.39 Carica papaya HOM05D004665 ORTHO05D006264 3.7e-96 355.9 426 49.1
HPP92_009749 Vanilla planifolia HOM05D004665 ORTHO05D006264 3.1e-95 352.8 420 47.1
Os02g0518100 Oryza sativa ssp. japonica HOM05D004665 ORTHO05D006264 1.5e-94 350.5 422 46.4
HanXRQChr14g0451551 Helianthus annuus HOM05D004665 ORTHO05D006264 8.5e-93 344.7 369 52.8
BcaB07g30221 Brassica carinata HOM05D004665 ORTHO05D006264 7.2e-92 341.7 378 52.1
Zm00001eb242230 Zea mays HOM05D004665 ORTHO05D006264 6.1e-91 338.6 409 47.7
Lsat_1_v5_gn_2_95241 Lactuca sativa HOM05D005263 ORTHO05D006891 1.8e-90 337.0 399 49.4
Atru.chr6.2724 Acer truncatum HOM05D004665 ORTHO05D006264 1.3e-88 330.9 366 51.4
FAN05G2324 Fragaria x ananassa HOM05D004665 ORTHO05D006264 1.8e-87 327.0 206 77.2
FAN02G3871 Fragaria x ananassa HOM05D004665 ORTHO05D006264 4.1e-87 325.9 206 76.7
HPP92_021581 Vanilla planifolia HOM05D004665 ORTHO05D006264 1.5e-86 323.9 430 44.2
AUR62017468 Chenopodium quinoa HOM05D004665 ORTHO05D006264 3.4e-86 322.8 380 50.5
DCAR_014318 Daucus carota HOM05D004665 ORTHO05D006264 1.5e-81 307.4 206 70.9
HPP92_009766 Vanilla planifolia HOM05D004665 ORTHO05D006264 4.4e-81 305.8 417 43.4
Peaxi162Scf00058g00033 Petunia axillaris HOM05D004665 ORTHO05D006264 1.4e-79 300.8 355 50.1
CAN.G1393.18 Capsicum annuum HOM05D004665 ORTHO05D006264 1.5e-73 280.8 360 47.8
Peaxi162Scf00420g00931 Petunia axillaris HOM05D004665 ORTHO05D006264 6.3e-72 275.4 169 81.1
Nitab4.5_0003951g0020 Nicotiana tabacum HOM05D004665 ORTHO05D006264 4.1e-71 272.7 223 67.3
PGSC0003DMG400025244 Solanum tuberosum HOM05D004665 ORTHO05D006264 4.2e-68 262.7 332 46.7
Sopen01g033730 Solanum pennellii HOM05D004665 ORTHO05D006264 2.1e-67 260.4 322 48.1
Solyc01g086730.4 Solanum lycopersicum HOM05D004665 ORTHO05D006264 8.0e-67 258.5 325 47.7
Mapoly0166s0011 Marchantia polymorpha HOM05D004665 ORTHO05D006264 2.3e-66 256.9 421 39.2
ATR0582G225 Amborella trichopoda HOM05D004665 ORTHO05D006264 9.8e-65 251.5 351 43.9
Pp3c3_36320 Physcomitrium patens HOM05D004665 ORTHO05D006264 3.1e-63 246.5 411 36.7
Pp3c8_3640 Physcomitrium patens HOM05D004665 ORTHO05D006264 3.1e-63 246.5 423 37.8
vmacro18403 Vaccinium macrocarpon HOM05D004665 ORTHO05D006264 2.5e-60 236.9 292 47.6
AagrBONN_evm.TU.Sc2ySwM_117.2741 Anthoceros agrestis HOM05D004665 ORTHO05D006264 4.0e-58 229.6 208 56.7
SEGI_40793 Sequoiadendron giganteum HOM05D004665 ORTHO05D006264 7.5e-57 225.3 228 56.1
Haze_14979 Corylus avellana HOM05D004665 ORTHO05D006264 7.8e-54 215.3 225 56.4
Zm00001eb180680 Zea mays HOM05D004665 ORTHO05D006264 1.2e-51 208.0 393 37.2
Lsat_1_v5_gn_8_141180 Lactuca sativa HOM05D004665 ORTHO05D006264 1.4e-50 204.5 168 62.5
vmacro18402 Vaccinium macrocarpon HOM05D004665 ORTHO05D006264 2.0e-46 190.7 133 72.2
Aqoxy271s006 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 2.8e-43 180.3 104 87.5
Cfa007634 Carpinus fangiana HOM05D004665 ORTHO05D006264 2.0e-38 164.1 147 62.6
Cre12.g523100 Chlamydomonas reinhardtii HOM05D004665 ORTHO05D006264 1.0e-37 161.8 206 43.7
Peaxi162Scf00420g00913 Petunia axillaris HOM05D004665 ORTHO05D006264 2.3e-37 160.6 142 59.2
Actinidia37709 Actinidia chinensis HOM05D004665 ORTHO05D006264 3.9e-37 159.8 195 52.3
PGSC0003DMG401020232 Solanum tuberosum HOM05D004665 ORTHO05D006264 2.5e-36 157.1 151 54.3
FAN02G3991 Fragaria x ananassa HOM05D004665 ORTHO05D006264 9.5e-36 155.2 146 58.9
CDE02G1303 Ceratophyllum demersum HOM05D004665 ORTHO05D006264 2.3e-34 150.6 101 75.2
Cre08.g358400 Chlamydomonas reinhardtii HOM05D004665 ORTHO05D006264 1.1e-31 141.7 203 38.9
Aqoxy271s005 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 2.7e-30 137.1 139 54.7
Atru.chr1.2008 Acer truncatum HOM05D004665 ORTHO05D006264 7.8e-30 135.6 140 52.1
CBR_g40440 Chara braunii HOM05D004665 ORTHO05D006264 1.7e-29 134.4 127 55.1
SMO266G0026 Selaginella moellendorffii HOM05D004665 ORTHO05D006264 2.1e-27 127.5 324 28.1
AL8G18270 Arabidopsis lyrata HOM05D004665 ORTHO05D021400 8.1e-27 125.6 81 72.8
Zm00001eb393410 Zea mays HOM05D004665 ORTHO05D006264 5.6e-20 102.8 138 47.1
CARHR285500 Cardamine hirsuta HOM05D004665 ORTHO05D021400 1.2e-19 101.7 70 74.3
Lsat_1_v5_gn_8_91301 Lactuca sativa HOM05D004665 ORTHO05D006264 9.9e-17 92.0 72 58.3
Hma1.2p1_0040F.1_g025010 Hydrangea macrophylla HOM05D004665 ORTHO05D021400 1.3e-16 91.7 60 70.0
BolC3t19617H Brassica oleracea HOM05D004665 ORTHO05D021400 9.9e-09 65.5 58 55.2
Hma1.2p1_1395F.1_g280510 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 2.9e-08 63.9 45 62.2
Nn6g33393 Nelumbo nucifera HOM05D004665 ORTHO05D006264 6.4e-08 62.8 98 42.9
C03p73200 Brassica napus HOM05D004665 ORTHO05D021400 9.3e-07 58.9 63 49.2
C09p15630 Brassica napus HOM05D004665 ORTHO05D021400 2.1e-06 57.8 62 46.8


User provided reference genes

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