Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 5.2e-115 418.7 414 100.0
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 4.0e-14 83.6 46 82.6
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 9.2e-11 72.4 46 69.6
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 2.0e-10 71.2 46 69.6
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 2.7e-10 70.9 46 67.4
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 5.9e-10 69.7 46 65.2
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 5.9e-10 69.7 46 65.2
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 7.8e-10 69.3 46 67.4
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 1.0e-09 68.9 51 60.8
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 2.3e-09 67.8 45 64.4
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 5.0e-09 66.6 46 67.4
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 6.6e-09 66.2 46 63.0
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 6.6e-09 66.2 46 63.0
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 6.6e-09 66.2 45 64.4
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 6.6e-09 66.2 45 64.4
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 6.6e-09 66.2 45 64.4
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 8.6e-09 65.9 46 63.0
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 8.6e-09 65.9 46 63.0
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 8.6e-09 65.9 45 62.2
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.5e-08 65.1 46 65.2
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.5e-08 64.3 61 52.5
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 2.5e-08 64.3 46 60.9
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 3.3e-08 63.9 46 60.9
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 9.5e-08 62.4 46 58.7
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.2e-07 62.0 45 57.8
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 1.2e-07 62.0 46 65.2
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 1.2e-07 62.0 46 65.2
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.6e-07 61.6 46 56.5
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 2.8e-07 60.8 46 56.5
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 2.8e-07 60.8 46 56.5
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 3.6e-07 60.5 46 56.5
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 3.6e-07 60.5 46 56.5
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 4.7e-07 60.1 46 56.5
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 6.2e-07 59.7 46 60.9
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 8.0e-07 59.3 46 60.9
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 8.0e-07 59.3 46 58.7
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 8.0e-07 59.3 46 50.0
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 1.1e-06 58.9 46 58.7
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 1.1e-06 58.9 46 54.3
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.1e-06 58.9 46 54.3
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.1e-06 58.9 46 54.3
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 1.4e-06 58.5 46 56.5
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.4e-06 58.5 46 56.5
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.8e-06 58.2 46 58.7
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.8e-06 58.2 46 58.7
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 1.8e-06 58.2 46 56.5
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 2.3e-06 57.8 46 63.0
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 2.3e-06 57.8 46 54.3
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.0e-06 57.0 45 60.0
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 4.0e-06 57.0 47 59.6
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 5.2e-06 56.6 46 56.5
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 5.2e-06 56.6 46 58.7
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 5.2e-06 56.6 46 54.3
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 5.2e-06 56.6 46 56.5
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 5.2e-06 56.6 46 56.5
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 5.2e-06 56.6 46 56.5
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 6.8e-06 56.2 46 50.0
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 6.8e-06 56.2 46 54.3
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 6.8e-06 56.2 47 57.4
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 8.9e-06 55.8 46 56.5


User provided reference genes

Program Settings