Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 0.0e+00 1476.8 731 100.0
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 0.0e+00 1458.7 731 99.2
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 0.0e+00 1144.4 793 72.4
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 0.0e+00 1138.6 730 75.9
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.1e-309 1066.2 725 71.2
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 6.7e-307 1057.0 730 71.5
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 2.4e-304 1048.5 728 70.9
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 5.8e-303 1043.9 703 72.0
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 1.9e-301 1038.9 727 69.3
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 1.3e-297 1026.2 730 69.3
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 4.1e-296 1021.1 730 69.0
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 1.5e-295 1019.2 730 68.8
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 2.5e-293 1011.9 731 66.9
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 2.0e-287 992.3 729 66.0
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 6.5e-286 987.3 731 66.6
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 1.5e-282 976.1 736 65.1
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 1.5e-282 976.1 729 66.3
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 2.6e-279 965.3 739 64.8
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 7.7e-279 963.8 728 64.6
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 1.0e-278 963.4 739 64.7
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 1.0e-278 963.4 728 65.5
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.3e-278 963.0 728 64.6
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.7e-278 962.6 731 65.1
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.7e-278 962.6 739 64.5
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 1.7e-278 962.6 723 65.4
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.9e-278 961.8 728 64.6
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 6.5e-278 960.7 732 64.1
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.2e-277 958.4 728 64.3
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 4.2e-277 958.0 735 64.4
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 7.2e-277 957.2 766 63.4
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 9.4e-277 956.8 725 64.1
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 1.6e-276 956.1 725 63.7
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 3.6e-276 954.9 731 64.2
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 8.0e-276 953.7 725 64.4
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 1.0e-275 953.4 724 64.6
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 3.0e-275 951.8 746 63.8
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 5.2e-275 951.0 734 64.6
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 6.7e-275 950.7 762 62.1
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 8.8e-275 950.3 725 64.0
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 3.3e-274 948.3 725 64.1
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 4.4e-274 948.0 733 63.6
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 9.7e-274 946.8 725 63.7
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 1.3e-273 946.4 725 63.9
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 3.1e-272 941.8 725 63.6
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 4.1e-272 941.4 725 63.0
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 2.6e-271 938.7 735 64.6
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 1.0e-270 936.8 727 63.7
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 3.8e-270 934.9 736 63.5
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 1.1e-269 933.3 717 65.7
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 1.9e-269 932.6 726 63.8
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 4.2e-269 931.4 732 62.3
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 7.2e-269 930.6 729 62.7
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 1.8e-267 926.0 732 61.7
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 4.0e-267 924.9 725 63.4
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 5.2e-267 924.5 728 62.6
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 6.8e-267 924.1 732 62.0
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 4.4e-266 921.4 725 63.2
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 9.8e-266 920.2 725 63.9
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 2.8e-265 918.7 728 62.4
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 5.4e-264 914.4 749 61.5
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 2.0e-263 912.5 732 61.7
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 5.9e-263 911.0 733 61.7
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 1.6e-260 902.9 724 62.0
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 6.8e-259 897.5 743 61.1
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 1.2e-258 896.7 731 60.9
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 1.5e-258 896.3 727 63.8
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.1e-256 888.3 732 59.7
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 1.5e-250 869.8 709 59.7
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 9.8e-250 867.1 727 61.1
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.7e-249 866.3 731 59.1
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 5.4e-248 861.3 708 59.5
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 5.4e-248 861.3 653 64.8
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 5.6e-245 851.3 731 58.1
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 7.3e-245 850.9 677 61.9
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.1e-240 837.0 822 56.2
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 5.6e-229 798.1 755 56.6
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 3.6e-228 795.4 641 63.2
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.0e-226 789.6 621 65.7
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 2.0e-226 789.6 731 55.7
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 9.2e-224 780.8 734 53.8
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 2.3e-222 776.2 675 59.7
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.1e-221 773.9 704 55.7
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 1.8e-219 766.5 611 61.4
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 1.9e-216 756.5 735 55.0
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 6.0e-215 751.5 619 60.9
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 1.0e-214 750.7 767 53.2
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 3.0e-214 749.2 609 60.8
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 3.6e-212 742.3 611 59.7
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.8e-211 740.0 492 70.9
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 7.4e-205 718.0 619 57.2
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 1.4e-195 687.2 635 54.6
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.4e-195 686.4 530 66.0
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.5e-194 683.7 457 71.1
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 2.0e-194 683.3 499 66.5
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 1.3e-190 670.6 622 55.8
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 4.1e-187 659.1 732 50.7
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 4.8e-172 609.0 457 62.6
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 3.1e-171 606.3 736 45.4
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 3.2e-160 569.7 740 44.5
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 1.3e-156 557.8 610 47.2
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 2.7e-146 523.5 432 61.3
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 5.2e-142 509.2 628 47.9
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 1.8e-139 500.7 382 65.4
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 2.9e-137 493.4 349 69.9
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.1e-135 487.3 586 44.0
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 4.0e-134 483.0 433 57.3
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 2.2e-124 450.7 842 35.7
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.5e-112 410.6 548 41.4
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.8e-111 407.1 485 44.9
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.8e-102 377.9 474 43.2
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 3.1e-102 377.1 293 62.1
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.0e-85 321.2 225 66.7
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 8.7e-73 279.3 229 62.0
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.8e-62 245.0 188 63.3
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 2.0e-56 224.9 257 44.7
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 5.7e-56 223.4 670 28.8
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 3.7e-55 220.7 320 40.6
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 4.5e-53 213.8 129 69.8
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 6.1e-50 203.4 286 37.8
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.2e-49 200.3 174 58.6
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.8e-47 194.5 191 58.6
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.6e-45 188.0 126 69.8
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.5e-40 172.2 126 67.5
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.0e-33 149.4 105 67.6
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.4e-33 149.1 118 56.8
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.3e-31 142.5 103 63.1
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 5.0e-28 130.6 131 53.4
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 6.1e-26 123.6 169 45.0
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 1.3e-20 105.9 75 68.0
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 9.5e-19 99.8 105 49.5
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 1.8e-17 95.5 343 29.2
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 1.7e-15 89.0 84 57.1
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 3.7e-15 87.8 88 50.0
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 7.3e-11 73.6 65 52.3
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 1.6e-10 72.4 86 44.2
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 8.0e-10 70.1 44 70.5
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 8.0e-10 70.1 59 59.3
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 1.8e-09 68.9 64 54.7


User provided reference genes

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