Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 2.9e-304 1047.7 525 100.0
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 3.6e-246 854.7 506 83.0
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 4.1e-242 841.3 531 78.7
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 1.3e-235 819.7 524 76.7
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 1.7e-235 819.3 525 78.1
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 2.2e-235 818.9 522 78.2
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 7.1e-234 813.9 536 76.5
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 3.0e-232 808.5 513 78.0
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 3.0e-232 808.5 531 75.0
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 5.1e-232 807.7 530 76.2
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 6.2e-230 800.8 532 75.8
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 4.4e-228 794.7 524 75.4
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 5.8e-228 794.3 531 74.6
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 7.6e-228 793.9 516 76.4
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 9.9e-228 793.5 522 75.9
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 9.9e-228 793.5 524 75.0
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.3e-227 793.1 516 76.0
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 2.4e-226 788.9 525 74.9
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 5.4e-226 787.7 513 76.2
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 9.3e-226 786.9 524 74.8
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 9.3e-226 786.9 525 74.3
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 1.6e-225 786.2 524 74.4
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.6e-225 786.2 524 74.6
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 2.7e-225 785.4 522 75.3
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 3.5e-225 785.0 522 75.3
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 4.6e-225 784.6 525 74.7
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 6.0e-225 784.3 511 75.7
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.0e-224 783.5 518 74.5
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 1.7e-224 782.7 529 73.7
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 1.7e-224 782.7 525 73.9
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 2.3e-224 782.3 518 75.5
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.0e-224 781.9 530 73.4
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 5.1e-224 781.2 529 74.3
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 5.1e-224 781.2 511 75.3
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.9e-223 779.2 511 75.3
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 7.3e-223 777.3 529 74.1
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 9.6e-223 776.9 511 75.1
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 6.2e-222 774.2 511 74.8
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 1.1e-221 773.5 529 71.8
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.4e-221 773.1 530 72.5
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.4e-221 772.3 516 74.4
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 2.4e-221 772.3 535 72.0
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 2.4e-221 772.3 535 71.8
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 5.3e-221 771.2 523 72.8
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 5.3e-221 771.2 481 79.0
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 9.0e-221 770.4 531 71.0
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 9.0e-221 770.4 524 73.3
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 1.5e-220 769.6 523 72.8
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 2.0e-220 769.2 523 72.8
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 2.6e-220 768.8 523 72.7
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 9.9e-220 766.9 487 78.6
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 1.4e-218 763.1 489 76.9
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 1.9e-218 762.7 518 72.0
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 2.4e-218 762.3 524 72.1
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 1.2e-217 760.0 531 71.9
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 1.6e-217 759.6 489 76.7
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 6.0e-217 757.7 524 71.0
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 6.0e-217 757.7 529 73.0
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.3e-216 756.5 523 72.1
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.3e-216 755.7 531 71.6
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 3.9e-216 755.0 528 72.2
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 5.1e-216 754.6 528 72.2
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.1e-215 753.4 525 71.0
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 2.5e-215 752.3 523 71.5
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 4.3e-215 751.5 463 79.3
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 7.3e-215 750.7 523 70.2
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 1.6e-214 749.6 525 71.4
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 2.1e-214 749.2 534 70.0
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 1.1e-213 746.9 532 71.2
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 2.4e-213 745.7 529 71.6
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 1.2e-212 743.4 524 70.4
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 2.0e-212 742.7 532 68.4
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.0e-212 742.7 527 71.9
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 7.6e-212 740.7 524 69.5
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 9.9e-212 740.3 522 70.1
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 2.9e-211 738.8 522 69.9
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.9e-210 736.1 523 70.2
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 4.2e-210 734.9 525 69.9
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 1.6e-209 733.0 531 69.1
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 1.6e-209 733.0 516 70.7
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 3.5e-209 731.9 531 69.9
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 4.6e-209 731.5 494 75.1
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 3.9e-208 728.4 517 70.6
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 5.1e-208 728.0 536 69.8
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.5e-207 725.7 469 75.3
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 5.6e-207 724.5 611 61.5
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 9.6e-207 723.8 554 65.5
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 3.7e-206 721.8 517 70.0
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 4.8e-206 721.5 524 68.9
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 4.0e-205 718.4 487 73.1
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 1.2e-204 716.8 531 69.1
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 1.2e-204 716.8 521 69.3
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 2.2e-203 712.6 516 68.8
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 2.9e-203 712.2 516 70.0
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.9e-202 709.5 531 66.3
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 2.1e-201 706.1 487 72.5
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 2.7e-201 705.7 486 71.8
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 3.5e-201 705.3 531 66.7
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 6.0e-201 704.5 506 69.8
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 7.9e-201 704.1 525 67.6
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 3.0e-200 702.2 523 68.3
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 3.9e-200 701.8 523 68.3
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 5.1e-200 701.4 531 65.7
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 6.7e-200 701.0 486 71.6
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 1.1e-199 700.3 516 68.6
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 1.9e-199 699.5 517 67.7
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 3.3e-199 698.7 531 67.2
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 5.7e-199 698.0 405 82.5
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 7.4e-199 697.6 524 67.9
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 9.6e-199 697.2 522 68.2
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 2.8e-198 695.7 517 66.3
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 2.8e-198 695.7 517 66.3
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 6.3e-198 694.5 524 65.5
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 2.6e-196 689.1 523 66.7
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 7.9e-193 677.6 517 67.5
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 3.7e-190 668.7 524 67.9
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 1.4e-189 666.8 484 69.2
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 6.9e-181 637.9 402 75.1
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.4e-180 635.6 537 61.3
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 6.1e-177 624.8 479 66.8
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 4.8e-174 615.1 537 59.4
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 8.2e-174 614.4 532 58.8
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 1.1e-170 604.0 500 62.4
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 9.4e-170 600.9 532 59.2
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 3.8e-155 552.4 540 55.2
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 2.1e-153 546.6 538 53.5
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 8.8e-152 541.2 523 56.8
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 1.0e-147 527.7 533 52.7
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 7.3e-146 521.5 406 66.5
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 5.7e-143 511.9 428 62.6
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 1.2e-140 504.2 503 54.5
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 2.8e-137 493.0 375 68.5
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 9.8e-135 484.6 345 72.8
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.1e-133 481.1 354 69.2
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 9.2e-133 478.0 562 47.9
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.9e-130 470.3 478 53.1
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 2.8e-129 466.5 547 48.6
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 2.4e-125 453.4 528 47.7
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.1e-112 411.4 398 59.3
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.1e-100 370.5 306 57.8
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 1.5e-95 354.4 531 40.3
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 1.3e-94 351.3 519 43.7
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 2.8e-81 307.0 305 57.7
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 1.8e-64 251.1 307 50.2
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 2.5e-61 240.7 175 72.0
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 7.9e-60 235.7 467 32.5
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 8.0e-52 209.1 233 50.6
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 9.7e-50 202.2 524 30.9
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 4.5e-47 193.4 417 31.7
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 4.7e-44 183.3 279 39.4
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 6.1e-44 183.0 91 92.3
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 3.4e-42 177.2 97 81.4
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 1.7e-41 174.9 419 32.0
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 2.8e-41 174.1 118 71.2
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.1e-40 172.2 111 76.6
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 2.0e-39 167.9 155 60.6
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 4.7e-36 156.8 163 49.7
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 1.4e-27 128.6 121 57.0
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 5.7e-26 123.2 134 54.5
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 1.0e-22 112.5 86 58.1
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 2.4e-16 91.3 157 37.6
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 7.8e-15 86.3 40 97.5
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.7e-14 85.1 61 62.3
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.2e-12 79.0 40 87.5
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 4.9e-09 67.0 32 90.6
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 8.3e-09 66.2 33 81.8
Eucgr.B01219 Eucalyptus grandis HOM05D002999 ORTHO05D003137 3.9e-06 57.4 200 23.5


User provided reference genes

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