Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 0.0e+00 1790.0 949 100.0
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 0.0e+00 1344.3 922 77.0
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 0.0e+00 1291.6 923 74.5
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 0.0e+00 1195.6 927 69.1
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 0.0e+00 1086.6 920 64.9
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 1.9e-311 1072.4 864 66.9
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 2.1e-308 1062.4 883 64.2
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 2.5e-306 1055.4 920 63.3
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 6.2e-305 1050.8 930 63.2
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 8.1e-305 1050.4 927 62.8
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 2.6e-303 1045.4 882 64.1
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 3.8e-302 1041.6 877 63.4
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 1.9e-301 1039.3 867 65.1
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 3.6e-297 1025.0 887 63.1
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 1.5e-295 1019.6 880 62.6
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 5.8e-295 1017.7 906 60.3
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 1.6e-289 999.6 924 60.9
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 4.8e-289 998.0 930 58.9
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 6.9e-288 994.2 924 59.0
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 8.4e-286 987.3 931 59.1
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 1.9e-285 986.1 922 58.9
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 7.1e-285 984.2 929 58.1
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 9.3e-285 983.8 905 59.3
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 6.0e-284 981.1 919 58.9
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 3.0e-283 978.8 864 61.6
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 8.7e-283 977.2 925 57.9
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 1.9e-282 976.1 869 60.1
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 4.3e-282 974.9 928 57.1
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 1.6e-281 973.0 873 60.8
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 1.6e-281 973.0 930 58.2
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 3.7e-281 971.8 878 58.7
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 6.3e-281 971.1 871 60.6
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 1.4e-280 969.9 911 58.5
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 5.9e-279 964.5 879 59.2
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 2.2e-278 962.6 953 56.5
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 6.5e-278 961.1 923 57.1
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 5.5e-277 958.0 906 57.7
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 9.3e-277 957.2 930 57.7
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 1.2e-276 956.8 922 57.6
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 8.7e-275 950.7 916 56.7
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.1e-274 950.3 916 56.6
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.1e-274 950.3 918 56.4
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 1.1e-274 950.3 913 57.1
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 2.5e-274 949.1 869 58.9
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 5.7e-274 948.0 907 56.8
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 4.8e-273 944.9 915 58.1
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 4.8e-273 944.9 875 57.7
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 1.8e-272 943.0 864 58.2
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 4.1e-272 941.8 902 57.3
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 5.3e-272 941.4 864 58.4
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 7.7e-271 937.6 893 56.4
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 1.3e-270 936.8 924 56.2
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 5.0e-270 934.9 898 58.4
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 6.5e-270 934.5 928 55.4
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 8.5e-270 934.1 931 57.0
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 1.6e-268 929.9 918 55.2
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 3.6e-268 928.7 916 57.4
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 3.6e-268 928.7 927 55.6
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 1.8e-267 926.4 907 56.2
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 5.1e-267 924.9 865 57.9
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 1.1e-266 923.7 919 56.3
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 1.1e-266 923.7 928 55.2
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 6.3e-265 917.9 936 55.1
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 1.4e-261 906.7 931 53.5
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 4.7e-260 901.7 893 55.0
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 9.7e-258 894.0 860 57.0
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 1.1e-256 890.6 869 57.0
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 4.1e-256 888.6 937 54.4
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.3e-254 883.6 907 54.1
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 1.1e-253 880.6 876 55.4
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 9.4e-253 877.5 876 55.3
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 2.1e-252 876.3 934 52.7
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 4.7e-252 875.2 935 53.4
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 8.0e-252 874.4 861 56.4
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 5.2e-251 871.7 931 52.6
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 3.3e-250 869.0 934 53.1
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 3.3e-250 869.0 934 53.1
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 3.3e-250 869.0 930 53.1
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 2.2e-249 866.3 924 52.6
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 1.8e-248 863.2 905 54.8
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 2.4e-248 862.8 805 59.3
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 9.1e-248 860.9 902 52.9
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.3e-246 857.1 952 51.6
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 1.4e-243 847.0 933 51.6
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 7.5e-242 841.3 906 53.0
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 6.1e-236 821.6 864 53.5
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 2.3e-235 819.7 876 50.7
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 1.5e-234 817.0 845 53.4
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 1.7e-233 813.5 750 58.8
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 5.6e-229 798.5 733 59.2
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 6.8e-227 791.6 734 58.4
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 9.8e-226 787.7 798 54.9
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 1.0e-222 777.7 656 64.8
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 7.8e-215 751.5 805 51.2
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 2.1e-183 647.1 552 62.0
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 6.7e-182 642.1 708 53.7
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 1.5e-181 641.0 611 54.2
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 6.2e-180 635.6 547 60.1
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 3.2e-176 623.2 886 42.0
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 2.5e-173 613.6 933 40.2
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 2.1e-172 610.5 892 40.4
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 5.8e-170 602.4 882 40.4
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 2.2e-156 557.4 708 47.2
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 3.6e-151 540.0 474 61.4
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 3.1e-147 526.9 799 43.1
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 7.7e-146 522.3 906 36.8
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 2.4e-115 421.0 477 50.7
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 5.2e-110 403.3 460 54.8
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 1.7e-108 398.3 954 32.3
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 6.4e-108 396.4 915 32.1
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.1e-102 379.0 398 54.0
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 1.4e-99 368.6 375 55.5
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.5e-96 357.8 347 54.8
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 8.3e-92 342.8 1007 28.6
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 7.8e-90 336.3 429 49.0
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 3.0e-89 334.3 946 28.4
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 6.6e-81 306.6 309 54.0
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 1.3e-76 292.4 285 54.4
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 7.6e-69 266.5 319 49.8
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 5.6e-64 250.4 212 61.8
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 1.4e-62 245.7 267 51.7
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.2e-59 234.6 180 66.1
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 3.3e-56 224.6 256 48.8
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 2.6e-53 214.9 395 40.5
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 9.3e-51 206.5 159 66.7
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.1e-48 199.5 265 44.5
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.8e-47 194.9 193 56.5
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 1.9e-43 182.2 130 71.5
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.2e-43 181.4 340 35.9
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 4.5e-37 161.0 130 63.1
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.0e-33 148.3 180 43.9
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 6.3e-31 140.6 124 61.3
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 3.1e-30 138.3 155 53.5
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 2.0e-29 135.6 109 67.0
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 2.2e-28 132.1 96 67.7
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 2.1e-26 125.6 102 68.6
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 6.1e-18 97.4 148 44.6
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.0e-16 92.4 69 72.5
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 5.7e-16 90.9 137 43.8
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 1.3e-15 89.7 91 54.9
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 2.2e-15 89.0 172 39.5
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.1e-14 83.6 194 28.9
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.0e-12 80.1 58 67.2
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.5e-11 75.5 104 42.3
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 1.6e-10 72.8 122 37.7
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 1.2e-08 66.6 67 53.7
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 3.4e-08 65.1 60 53.3


User provided reference genes

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