Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.8e-177 625.2 311 100.0
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 6.8e-168 594.0 311 94.9
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 2.1e-137 492.7 308 80.5
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 8.1e-137 490.7 312 79.5
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 1.0e-126 457.2 273 81.3
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.4e-125 453.4 311 71.7
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 1.4e-125 453.4 280 77.5
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 9.3e-125 450.7 274 77.7
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 2.1e-124 449.5 271 79.7
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 3.5e-124 448.7 294 74.8
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 6.0e-124 448.0 305 72.8
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 6.0e-124 448.0 278 77.0
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 2.3e-123 446.0 273 77.7
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 3.0e-123 445.7 309 70.6
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 3.0e-123 445.7 309 70.6
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 5.1e-123 444.9 271 80.4
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 5.1e-123 444.9 271 80.1
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 6.7e-123 444.5 311 70.7
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 6.7e-123 444.5 276 77.9
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 6.7e-123 444.5 271 80.1
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 8.7e-123 444.1 310 71.3
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 8.7e-123 444.1 271 80.1
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 1.1e-122 443.7 272 79.0
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 5.6e-122 441.4 291 73.5
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 7.4e-122 441.0 271 79.7
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 7.4e-122 441.0 270 80.0
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 9.6e-122 440.7 265 79.6
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.6e-121 439.9 274 77.4
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 6.2e-121 438.0 275 76.7
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 6.2e-121 438.0 271 78.6
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 6.2e-121 438.0 293 74.4
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 1.4e-120 436.8 311 69.5
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 2.4e-120 436.0 307 70.0
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.4e-120 436.0 271 77.1
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 3.1e-120 435.6 265 79.6
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 5.3e-120 434.9 276 74.6
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 5.3e-120 434.9 303 71.6
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 5.3e-120 434.9 323 68.4
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 6.9e-120 434.5 270 78.1
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 9.0e-120 434.1 341 66.3
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.2e-119 433.7 270 76.7
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.2e-119 433.7 341 66.3
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 1.5e-119 433.3 270 77.4
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 2.6e-119 432.6 295 73.2
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 4.5e-119 431.8 273 77.7
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 7.6e-119 431.0 273 76.2
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.0e-118 430.6 294 71.8
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 1.7e-118 429.9 271 76.8
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 2.2e-118 429.5 272 76.1
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 3.8e-118 428.7 269 77.7
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 3.8e-118 428.7 272 77.6
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 4.9e-118 428.3 273 76.2
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.9e-118 428.3 322 67.4
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 8.4e-118 427.6 273 76.2
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 1.4e-117 426.8 272 75.7
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 1.4e-117 426.8 264 79.2
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 2.5e-117 426.0 269 76.6
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 2.5e-117 426.0 269 76.6
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 3.2e-117 425.6 272 75.7
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 4.2e-117 425.2 293 71.3
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 5.5e-117 424.9 268 76.1
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 5.5e-117 424.9 269 76.6
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 1.6e-116 423.3 268 76.5
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.6e-116 423.3 281 73.0
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 1.6e-116 423.3 305 69.8
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 2.1e-116 422.9 265 77.7
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 2.7e-116 422.5 269 77.3
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 2.7e-116 422.5 269 77.3
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 3.5e-116 422.2 281 72.6
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 4.6e-116 421.8 263 77.9
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 7.9e-116 421.0 266 76.7
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 1.3e-115 420.2 267 73.8
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 3.0e-115 419.1 265 77.4
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.0e-115 419.1 305 68.2
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 5.1e-115 418.3 270 75.6
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 5.1e-115 418.3 271 74.5
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 5.1e-115 418.3 285 70.5
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 5.1e-115 418.3 262 77.5
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 6.7e-115 417.9 268 76.1
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 6.7e-115 417.9 268 76.1
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 8.7e-115 417.5 281 72.2
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.9e-114 416.4 321 65.4
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 1.9e-114 416.4 269 77.0
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.5e-114 416.0 307 67.1
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 9.7e-114 414.1 276 73.6
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 2.4e-112 409.5 263 74.1
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 4.1e-112 408.7 282 72.3
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 1.5e-111 406.8 258 75.6
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.2e-110 402.9 264 72.3
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 3.8e-110 402.1 267 71.5
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 1.9e-109 399.8 266 73.3
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 3.2e-109 399.1 307 68.7
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 4.2e-109 398.7 258 74.4
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 1.2e-108 397.1 273 71.4
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 8.2e-105 384.4 296 66.2
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 8.2e-105 384.4 382 55.2
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 2.4e-104 382.9 249 75.1
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 2.0e-103 379.8 289 65.4
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 1.7e-102 376.7 233 77.7
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 1.7e-102 376.7 262 70.6
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 6.5e-102 374.8 256 72.7
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.9e-101 373.2 255 71.4
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.5e-101 372.9 308 62.3
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 9.4e-101 370.9 266 68.8
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.4e-99 367.1 234 74.4
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 8.8e-99 364.4 257 70.4
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 5.7e-98 361.7 230 75.7
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 5.3e-96 355.1 249 71.9
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 3.5e-95 352.4 260 66.9
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.5e-95 352.1 263 67.3
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 6.1e-92 341.7 264 63.6
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 1.0e-91 340.9 261 63.6
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.7e-89 333.6 251 66.9
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 8.2e-89 331.3 262 64.9
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 2.0e-87 326.6 273 62.6
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 3.5e-87 325.9 267 63.3
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 1.7e-86 323.6 213 74.2
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.7e-86 323.6 268 60.4
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 8.0e-84 314.7 255 66.3
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 1.5e-82 310.5 203 73.9
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 1.2e-79 300.8 174 82.8
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.7e-79 299.7 243 63.8
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 5.9e-79 298.5 275 57.5
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 9.1e-72 274.6 172 76.7
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.2e-71 274.2 183 71.6
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.3e-70 270.8 183 70.5
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 4.1e-64 249.2 154 77.3
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 5.4e-64 248.8 185 69.2
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 7.3e-61 238.4 177 69.5
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 7.3e-61 238.4 170 69.4
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.6e-58 229.9 140 77.1
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.9e-57 226.5 261 47.9
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 4.0e-51 206.1 150 69.3
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 9.8e-50 201.4 168 62.5
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 2.9e-49 199.9 121 78.5
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 2.9e-49 199.9 121 78.5
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 5.4e-48 195.7 119 77.3
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 2.7e-47 193.4 119 75.6
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 4.3e-45 186.0 122 73.8
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 7.6e-42 175.3 298 40.3
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 3.3e-37 159.8 108 71.3
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 6.2e-36 155.6 142 57.0
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.4e-35 154.5 115 67.0
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.8e-35 154.1 125 56.0
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 3.8e-33 146.4 97 73.2
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 3.2e-32 143.3 116 61.2
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.1e-31 140.6 157 47.1
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 5.1e-30 136.0 194 40.2
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 5.6e-29 132.5 88 69.3
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.4e-27 127.9 89 68.5
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 2.0e-26 124.0 77 80.5
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.1e-24 118.2 95 64.2
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 1.0e-22 111.7 70 77.1
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 1.5e-21 107.8 77 68.8
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.3e-17 94.7 65 67.7
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 1.9e-16 90.9 197 36.5
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.2e-16 90.1 70 64.3
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 4.6e-15 86.3 55 72.7
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 4.6e-15 86.3 55 72.7
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 1.9e-13 80.9 46 80.4
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 3.0e-06 57.0 243 21.4


User provided reference genes

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