Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 3.5e-261 904.4 460 100.0
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 5.7e-171 604.7 466 68.9
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.1e-150 537.3 471 64.5
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 7.5e-147 524.6 460 62.8
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.5e-142 510.4 475 61.5
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 4.0e-132 475.7 464 56.2
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 4.4e-115 419.1 487 49.7
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.4e-113 414.1 487 48.7
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 3.9e-111 406.0 490 50.8
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 6.6e-111 405.2 488 48.8
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.8e-108 397.1 493 46.9
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 9.0e-108 394.8 493 46.7
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 3.4e-107 392.9 486 48.1
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 8.4e-106 388.3 482 49.2
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 2.1e-104 383.6 493 46.2
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 2.3e-103 380.2 495 45.1
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 3.9e-103 379.4 482 47.1
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.9e-102 377.1 482 47.3
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.5e-102 376.7 482 47.7
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 5.6e-102 375.6 488 46.1
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 1.3e-101 374.4 482 46.9
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 8.1e-101 371.7 492 45.1
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 1.8e-100 370.5 484 45.5
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 3.1e-100 369.8 471 46.7
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 4.0e-100 369.4 528 43.8
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 2.6e-99 366.7 489 43.8
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 2.6e-99 366.7 508 45.3
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 2.6e-99 366.7 503 45.3
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 7.6e-99 365.2 443 51.5
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 9.9e-99 364.8 477 47.0
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 2.9e-98 363.2 489 43.1
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 4.9e-98 362.5 481 46.2
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 2.4e-97 360.1 481 45.9
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 2.4e-97 360.1 479 47.0
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 3.2e-97 359.8 483 44.9
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 5.5e-97 359.0 495 44.4
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 2.1e-96 357.1 489 45.0
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 2.1e-96 357.1 511 44.2
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 2.7e-96 356.7 482 44.0
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 3.5e-96 356.3 473 47.4
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 3.5e-96 356.3 490 44.5
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 4.6e-96 355.9 442 47.5
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 1.3e-95 354.4 473 47.1
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 1.3e-95 354.4 473 47.1
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 1.8e-95 354.0 476 43.9
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.3e-95 353.6 508 42.5
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.0e-95 353.2 478 43.9
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 3.9e-95 352.8 489 44.0
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 5.1e-95 352.4 414 49.3
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 6.7e-95 352.1 503 45.5
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 8.7e-95 351.7 475 45.5
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 8.7e-95 351.7 494 43.3
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 8.7e-95 351.7 516 43.8
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.1e-94 351.3 480 46.7
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.5e-94 350.9 493 44.4
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.5e-94 350.1 472 45.8
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 2.5e-94 350.1 501 44.1
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 4.3e-94 349.4 531 41.6
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 4.3e-94 349.4 480 44.2
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 7.4e-94 348.6 484 44.2
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.3e-93 347.8 473 46.3
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.6e-93 347.4 346 55.5
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.8e-93 346.7 510 43.7
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 2.8e-93 346.7 508 42.5
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 3.7e-93 346.3 487 43.3
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 4.8e-93 345.9 478 44.8
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 8.2e-93 345.1 481 45.7
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.1e-92 344.7 502 44.6
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 3.1e-92 343.2 474 46.0
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 3.4e-91 339.7 500 44.4
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 3.4e-91 339.7 472 43.4
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 3.4e-91 339.7 470 43.6
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.5e-89 332.4 478 44.4
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 7.1e-89 332.0 406 46.1
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 1.6e-88 330.9 490 42.0
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 4.6e-88 329.3 521 40.3
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 4.6e-88 329.3 404 45.3
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 4.6e-88 329.3 404 45.3
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 4.6e-88 329.3 457 43.1
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.0e-87 328.2 469 42.9
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 1.3e-87 327.8 478 43.9
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 3.0e-87 326.6 427 47.3
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 2.5e-86 323.6 468 40.6
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 2.5e-86 323.6 485 41.9
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.7e-86 322.4 478 43.5
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 5.7e-86 322.4 505 40.2
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.3e-85 321.2 479 43.4
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 1.6e-85 320.9 479 43.4
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.6e-85 320.9 365 48.8
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 2.1e-85 320.5 498 42.4
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.8e-85 320.1 523 40.3
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.8e-85 320.1 523 40.3
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 3.7e-85 319.7 513 38.8
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 8.2e-85 318.5 473 40.2
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 1.8e-84 317.4 515 39.0
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 2.6e-83 313.5 456 39.9
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 6.1e-80 302.4 457 42.2
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 1.6e-77 294.3 476 40.3
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 4.8e-77 292.7 468 40.0
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.2e-75 288.1 469 39.4
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 2.0e-75 287.3 473 40.8
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.0e-74 285.0 474 38.6
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 4.2e-73 279.6 559 34.0
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.2e-72 278.1 470 40.2
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.6e-72 276.6 471 38.4
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 4.6e-72 276.2 457 40.3
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 7.9e-72 275.4 471 41.0
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.4e-68 264.6 460 39.3
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 2.0e-67 260.8 148 88.5
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.4e-63 248.1 359 41.5
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 6.7e-63 245.7 339 44.2
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 3.3e-62 243.4 470 37.7
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 9.7e-62 241.9 439 37.4
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.7e-61 241.1 486 35.6
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.1e-60 238.4 445 38.0
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.8e-60 237.7 372 39.5
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.5e-57 228.0 416 37.3
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 4.2e-57 226.5 461 34.7
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 1.8e-55 221.1 488 32.8
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 9.7e-54 215.3 473 34.2
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 3.1e-52 210.3 432 36.3
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 9.4e-49 198.7 414 37.0
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 2.2e-45 187.6 730 26.2
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.1e-36 158.7 430 29.3
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 3.5e-35 153.7 395 29.6
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 5.0e-34 149.8 394 33.8
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 9.5e-33 145.6 510 26.5
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 3.7e-29 133.7 211 39.8
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.4e-28 131.7 214 41.6
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 7.0e-28 129.4 206 38.8
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 7.3e-25 119.4 215 35.8
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 1.6e-24 118.2 550 23.1
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 6.2e-24 116.3 550 23.8
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.2e-22 112.1 174 40.2
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 7.5e-22 109.4 208 37.5
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 3.2e-20 104.0 410 25.9
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 9.2e-20 102.4 215 35.8
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 6.0e-19 99.8 142 38.7
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.5e-17 94.4 160 38.1
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 5.6e-17 93.2 74 56.8
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 6.2e-16 89.7 211 31.3
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.3e-15 87.8 66 60.6
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 2.6e-14 84.3 90 47.8
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.2e-13 81.3 78 47.4
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 2.2e-13 81.3 68 54.4
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 3.7e-13 80.5 521 22.3
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.9e-12 78.2 69 49.3
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.2e-11 75.5 199 33.7
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 4.6e-11 73.6 166 29.5
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 4.6e-11 73.6 174 33.9
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 2.3e-10 71.2 295 24.4
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 6.6e-10 69.7 120 38.3
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 4.3e-09 67.0 117 40.2
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 6.2e-08 63.2 100 38.0
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 2.4e-07 61.2 100 36.0
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 4.0e-07 60.5 104 40.4
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 6.8e-07 59.7 70 42.9
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 8.9e-07 59.3 114 34.2
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 1.2e-06 58.9 100 36.0
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 1.5e-06 58.5 229 28.8
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 1.5e-06 58.5 184 29.9
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 2.6e-06 57.8 106 37.7
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 2.6e-06 57.8 206 30.6
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 2.6e-06 57.8 206 30.6
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 3.4e-06 57.4 128 35.2
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 4.4e-06 57.0 47 51.1
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 9.9e-06 55.8 99 37.4


User provided reference genes

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